Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000861.1

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

253489 .. 253830

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000861.1_g000059.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atgctggaaattgggctgattccgagtgctgttacttataacaccttgattgatggttattgcaataagggtgatctggacaaggctttcagttatagagatgagatggtgaagggtataatgccgacggtgtcaacttacaattttttcattcatgaattgtttatggaaggtagggtgagtgaagctgattgtatggttagagatgtggaagagaagggaatggttcctgatgccattacgtataatatcctcattaatggctattgcaggtctgggaatgcaaagaaggcgtttatctttcgcgatgaaatgttaagtaaaagggatagagcccactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

113

Amino Acids

12.9

Weight (kDa)

5.33

Isoelectric Point (pI)

26.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	39
Acc36I	ACCTGC	1 cut(s)	261
AccII	CGCG	1 cut(s)	306
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
AseI	ATTAAT	1 cut(s)	258
AsuHPI	GGTGA	3 cut(s)	83, 121, 190
BanII	GRGCYC	1 cut(s)	337
BccI	CCATC	2 cut(s)	47, 100
BfuAI	ACCTGC	1 cut(s)	261
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	1 cut(s)	223
BsaAI	YACGTR	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	306
BsmI	GAATGC	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	73
Bsp68I	TCGCGA	1 cut(s)	306
BspFNI	CGCG	1 cut(s)	306
BspHI	TCATGA	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	261
BssMI	GATC	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	243
BstFNI	CGCG	1 cut(s)	306
BstKTI	GATC	1 cut(s)	76
BstMBI	GATC	1 cut(s)	73
BstMWI	GCNNNNNNNGC	1 cut(s)	290
BstSNI	TACGTA	1 cut(s)	243
BstUI	CGCG	1 cut(s)	306
BtgZI	GCGATG	1 cut(s)	321
BtuMI	TCGCGA	1 cut(s)	306
BveI	ACCTGC	1 cut(s)	261
CciI	TCATGA	1 cut(s)	154
CviAII	CATG	1 cut(s)	155
CviJI	RGCY	5 cut(s)	16, 86, 188, 264, 335
CviKI_1	RGCY	5 cut(s)	16, 86, 188, 264, 335
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco105I	TACGTA	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	337
FaeI	CATG	1 cut(s)	158
FaiI	YATR	7 cut(s)	39, 96, 119, 156, 167, 197, 246
FatI	CATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	135
HindII	GTYRAC	1 cut(s)	135
HinfI	GANTC	1 cut(s)	19
HphI	GGTGA	3 cut(s)	83, 121, 190
Hpy166II	GTNNAC	1 cut(s)	135
Hpy188I	TCNGA	1 cut(s)	24
Hpy188III	TCNNGA	4 cut(s)	77, 155, 230, 305
Hpy8I	GTNNAC	1 cut(s)	135
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	4 cut(s)	106, 164, 211, 283
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	3 cut(s)	63, 270, 284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	1 cut(s)	158
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	4 cut(s)	62, 243, 256, 261
LweI	GCATC	1 cut(s)	223
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	224
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	3 cut(s)	9, 142, 158
MnlI	CCTC	1 cut(s)	263
MseI	TTAA	2 cut(s)	258, 317
Mva1269I	GAATGC	1 cut(s)	286
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	1 cut(s)	290
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	158
NlaIV	GGNNCC	1 cut(s)	228
NruI	TCGCGA	1 cut(s)	306
PagI	TCATGA	1 cut(s)	154
PctI	GAATGC	1 cut(s)	286
PfeI	GAWTC	1 cut(s)	19
PflFI	GACNNNGTC	1 cut(s)	130
Ppu21I	YACGTR	1 cut(s)	243
PshBI	ATTAAT	1 cut(s)	258
PsiI	TTATAA	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	228
PsyI	GACNNNGTC	1 cut(s)	130
RruI	TCGCGA	1 cut(s)	306
SaqAI	TTAA	2 cut(s)	258, 317
Sau3AI	GATC	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	337
SetI	ASST	5 cut(s)	47, 175, 190, 245, 275
SfaNI	GCATC	1 cut(s)	223
SnaBI	TACGTA	1 cut(s)	243
Sse9I	AATT	3 cut(s)	9, 142, 158
TaaI	ACNGT	1 cut(s)	130
TaiI	ACGT	1 cut(s)	245
TasI	AATT	3 cut(s)	9, 142, 158
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	2 cut(s)	258, 317
Tru9I	TTAA	2 cut(s)	258, 317
TspDTI	ATGAA	4 cut(s)	139, 143, 171, 324
Tth111I	GACNNNGTC	1 cut(s)	130
VspI	ATTAAT	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.