Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002766.1

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

98590 .. 99321

Gene Structure 732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002766.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

atggaagagaagggaatggttcctgatgccattacgtataatatcctgattaatggctattgcaggtctgggaatgcaaagaaggtgtttatccttcgcggtgaaatgttgagtaaagggatagagcccactaaggaaacttatacatcacttatttatgttttgagtaaaaggaagagaatgaatgaggcagatgacttgtttgagaagatactgcgtaagggtgttctaccggatcttgtgatgttcaatgccttgattgatggtcattgtgctaatgggaatatggagcgtgcattttcgcttttgaggcagatggataaaatgaaggttcatccagatgaagtgacgtacaataccctaatgcaagggcgctgcagggctgggaaagttcaggaagctcgggaacttctggatgagataaagacaaggggaattaagcgtgattacattagtttcaatcctacacttctaacggacaatgctcttataaaaggtctatgcaaaaaccaagaaggtgatcttgctcacgagctccttaaagaaatggtgagcagagggattactcccgatgacagcacatattactctctgattgacggaattgagaatgttgaggaatttctcagaaagggcggcgattcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

215

Amino Acids

24.42

Weight (kDa)

6.35

Isoelectric Point (pI)

27.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	491
Acc36I	ACCTGC	1 cut(s)	54
AccII	CGCG	1 cut(s)	99
AciI	CCGC	2 cut(s)	99, 636
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	1 cut(s)	620
AfaI	GTAC	1 cut(s)	353
AgsI	TTSAA	2 cut(s)	250, 460
AluBI	AGCT	2 cut(s)	401, 535
AluI	AGCT	2 cut(s)	401, 535
Alw21I	GWGCWC	1 cut(s)	537
AlwI	GGATC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	402
ApeKI	GCWGC	1 cut(s)	375
ApoI	RAATTY	1 cut(s)	620
AseI	ATTAAT	1 cut(s)	51
AspLEI	GCGC	1 cut(s)	375
AsuHPI	GGTGA	3 cut(s)	113, 530, 562
AvaI	CYCGRG	1 cut(s)	402
BanII	GRGCYC	2 cut(s)	129, 537
BauI	CACGAG	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	362
BccI	CCATC	2 cut(s)	257, 310
BfmI	CTRYAG	1 cut(s)	376
BfoI	RGCGCY	1 cut(s)	376
BfuAI	ACCTGC	1 cut(s)	54
BisI	GCNGC	2 cut(s)	376, 637
BlsI	GCNGC	2 cut(s)	377, 638
BmeT110I	CYCGRG	1 cut(s)	402
BmiI	GGNNCC	1 cut(s)	21
BmsI	GCATC	1 cut(s)	16
BsaAI	YACGTR	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	232
BseGI	GGATG	2 cut(s)	334, 421
BseMII	CTCAG	1 cut(s)	640
BseXI	GCAGC	1 cut(s)	362
BseYI	CCCAGC	1 cut(s)	383
Bsh1236I	CGCG	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	79
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	129, 537
Bsp143I	GATC	2 cut(s)	235, 520
BspACI	CCGC	2 cut(s)	99, 636
BspCNI	CTCAG	1 cut(s)	639
BspFNI	CGCG	1 cut(s)	99
BspHI	TCATGA	1 cut(s)	644
BspLI	GGNNCC	1 cut(s)	21
BspMAI	CTGCAG	1 cut(s)	380
BspMI	ACCTGC	1 cut(s)	54
BspPI	GGATC	1 cut(s)	243
BssMI	GATC	2 cut(s)	235, 520
BssSI	CACGAG	1 cut(s)	530
Bst2BI	CACGAG	1 cut(s)	530
Bst6I	CTCTTC	1 cut(s)	170
BstBAI	YACGTR	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	132, 626
BstF5I	GGATG	2 cut(s)	334, 421
BstFNI	CGCG	1 cut(s)	99
BstH2I	RGCGCY	1 cut(s)	376
BstHHI	GCGC	1 cut(s)	375
BstKTI	GATC	2 cut(s)	238, 523
BstMBI	GATC	2 cut(s)	235, 520
BstMWI	GCNNNNNNNGC	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	376
BstSNI	TACGTA	1 cut(s)	36
BstUI	CGCG	1 cut(s)	99
BstV1I	GCAGC	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	334, 421
BveI	ACCTGC	1 cut(s)	54
Cac8I	GCNNGC	1 cut(s)	294
CciI	TCATGA	1 cut(s)	644
CfoI	GCGC	1 cut(s)	375
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	1 cut(s)	645
CviJI	RGCY	5 cut(s)	57, 127, 383, 401, 535
CviKI_1	RGCY	5 cut(s)	57, 127, 383, 401, 535
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	2 cut(s)	132, 626
DpnI	GATC	2 cut(s)	237, 522
DpnII	GATC	2 cut(s)	235, 520
Eam1104I	CTCTTC	1 cut(s)	170
EarI	CTCTTC	1 cut(s)	170
Ecl136II	GAGCTC	1 cut(s)	535
Eco105I	TACGTA	1 cut(s)	36
Eco24I	GRGCYC	2 cut(s)	129, 537
Eco53kI	GAGCTC	1 cut(s)	535
Eco88I	CYCGRG	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	535
EcoT38I	GRGCYC	2 cut(s)	129, 537
FaeI	CATG	1 cut(s)	648
FaiI	YATR	8 cut(s)	39, 144, 159, 287, 491, 502, 583, 646
FalI	AAGNNNNNCTT	2 cut(s)	507, 539
FatI	CATG	1 cut(s)	644
Fnu4HI	GCNGC	2 cut(s)	376, 637
FokI	GGATG	2 cut(s)	321, 428
FriOI	GRGCYC	2 cut(s)	129, 537
Fsp4HI	GCNGC	2 cut(s)	376, 637
GlaI	GCGC	1 cut(s)	374
GluI	GCNGC	2 cut(s)	376, 637
GsaI	CCCAGC	1 cut(s)	387
HaeII	RGCGCY	1 cut(s)	376
HapII	CCGG	1 cut(s)	233
HhaI	GCGC	1 cut(s)	375
Hin1II	CATG	1 cut(s)	648
Hin6I	GCGC	1 cut(s)	373
HinP1I	GCGC	1 cut(s)	373
HinfI	GANTC	1 cut(s)	641
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	3 cut(s)	113, 530, 562
Hpy188I	TCNGA	2 cut(s)	594, 629
Hpy188III	TCNNGA	9 cut(s)	23, 46, 338, 395, 404, 413, 530, 569, 645
HpyAV	CCTTC	5 cut(s)	4, 76, 104, 322, 509
HpyCH4IV	ACGT	2 cut(s)	35, 350
HpyCH4V	TGCA	6 cut(s)	63, 77, 296, 367, 378, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	310
HpyF3I	CTNAG	2 cut(s)	132, 626
HpySE526I	ACGT	2 cut(s)	35, 350
Hsp92II	CATG	1 cut(s)	648
HspAI	GCGC	1 cut(s)	373
Kzo9I	GATC	2 cut(s)	235, 520
LmnI	GCTCC	2 cut(s)	289, 540
Lsp1109I	GCAGC	1 cut(s)	362
LweI	GCATC	1 cut(s)	16
MaeII	ACGT	2 cut(s)	35, 350
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	2 cut(s)	237, 522
MboI	GATC	2 cut(s)	235, 520
MboII	GAAGA	3 cut(s)	17, 187, 220
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	2 cut(s)	129, 537
MluCI	AATT	3 cut(s)	435, 603, 620
MnlI	CCTC	4 cut(s)	181, 303, 551, 610
MseI	TTAA	3 cut(s)	51, 438, 540
MslI	CAYNNNNRTG	1 cut(s)	339
MspI	CCGG	1 cut(s)	233
Mva1269I	GAATGC	1 cut(s)	79
MvnI	CGCG	1 cut(s)	99
MwoI	GCNNNNNNNGC	1 cut(s)	310
NdeII	GATC	2 cut(s)	235, 520
NlaIII	CATG	1 cut(s)	648
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	346
PagI	TCATGA	1 cut(s)	644
PctI	GAATGC	1 cut(s)	79
PfeI	GAWTC	1 cut(s)	641
PkrI	GCNGC	2 cut(s)	377, 638
Ppu21I	YACGTR	1 cut(s)	36
PshBI	ATTAAT	1 cut(s)	51
PsiI	TTATAA	1 cut(s)	491
Psp124BI	GAGCTC	1 cut(s)	537
PspFI	CCCAGC	1 cut(s)	383
PspN4I	GGNNCC	1 cut(s)	21
PstI	CTGCAG	1 cut(s)	380
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	339
SacI	GAGCTC	1 cut(s)	537
SaqAI	TTAA	3 cut(s)	51, 438, 540
SatI	GCNGC	2 cut(s)	376, 637
Sau3AI	GATC	2 cut(s)	235, 520
SduI	GDGCHC	2 cut(s)	129, 537
SetI	ASST	9 cut(s)	38, 68, 87, 333, 353, 403, 499, 520, 537
SfaNI	GCATC	1 cut(s)	16
SfcI	CTRYAG	1 cut(s)	376
SmiMI	CAYNNNNRTG	1 cut(s)	339
SnaBI	TACGTA	1 cut(s)	36
Sse9I	AATT	3 cut(s)	435, 603, 620
SsiI	CCGC	2 cut(s)	99, 636
SstI	GAGCTC	1 cut(s)	537
TaiI	ACGT	2 cut(s)	38, 353
TasI	AATT	3 cut(s)	435, 603, 620
TauI	GCSGC	1 cut(s)	639
TfiI	GAWTC	1 cut(s)	641
Tru1I	TTAA	3 cut(s)	51, 438, 540
Tru9I	TTAA	3 cut(s)	51, 438, 540
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	375
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	5 cut(s)	197, 323, 341, 357, 633
TspGWI	ACGGA	2 cut(s)	491, 615
VspI	ATTAAT	1 cut(s)	51
XapI	RAATTY	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.