Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

15257462 .. 15261460

Gene Structure 3999 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23329

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGACGAGTGACAATGTTATGCCTAGGACTAAGACTTGTAATGAATTGCTGAGTTTGTTTTCGAAATTGAATCGAACCGAGAGGGCTTGGGTTTTGTATGCTGACATGTTTAGGTTGAAGATCAAGTCCAGTGTTTGTACTTTTAACATCATGATTAATGTGTTGTGCAAAGAAGGGAAGTTAAAGAAGGCAAAGGAGTTTCTTGGGTTTATGGAGATTTTGGGGATTAAGCCTACTGTTGTTACTTATAATACCATCATTCATGGGTTTTGTTTGAGAGGCAGAGTTGGAGGGGCTCAGATGATTTTTGGTGCTATGAAAGGTAGAGGAGTTCAGCCGGATTCTTACACGCATGGATTGCTTATTAGTGGGATGTGTAAGGAGAAAAGGCTTGATGAAGTGTCTGGTCTTTTTGATAAAATGCTGGATATTGGGCTGCTTCCGCGTGCTGTTACTTATAACACCCTGATTGATGGTTATTGCAATAAGGGGACCTTTGATGTACCAAGTAAACTCCGAGTCTCAATTTTCTTGTCTAGAATCGAGAACATGCATAAACTTTTATTTTGGGCATCAAATTTTGTTATGGACACCAATAAACTTCTCAGCAACCCAAAGCGTCTCACAGGCCCAGTTGCTTTTTTTCACTTAGTCTTTTATTTTTCCTTTCTCACAGCTGCTTTACTTCCATCTCCACTATCCCCAAACCCAGGTGAACACGAACTTGGTACGTCATTCTTGCCAAGCCAAAGCGGAGATGGATTTGGAGACAGAAATCTGTTTGGCGATGGAGTTGAAGATGGGCCGCGACTATATTCTTGTCCCAAAAGGATTTCAGAGCCTGCAATTGAGATTTCTGCACACAAATTGGTGACTCTGGGCTTTGAATTTTTGTCTTCTGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

302

Amino Acids

33.63

Weight (kDa)

9.19

Isoelectric Point (pI)

38.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	9 - 57	1e-10	PPR repeat family
PPR_3	PF13812	32 - 88	1.8e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	42 - 72	4.5e-09	PPR repeat
PPR_2	PF13041	44 - 91	4e-15	PPR repeat family
PPR	PF01535	47 - 76	3.8e-06	PPR repeat
PPR_1	PF12854	75 - 107	2.2e-11	PPR repeat
PPR_2	PF13041	78 - 127	5.1e-16	PPR repeat family
PPR	PF01535	81 - 111	3.7e-06	PPR repeat
PPR_1	PF12854	109 - 141	1.6e-07	PPR repeat
PPR_2	PF13041	121 - 162	4.3e-10	PPR repeat family
PPR_1	PF12854	145 - 165	1.2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	249, 459
AccII	CGCG	2 cut(s)	445, 808
AciI	CCGC	3 cut(s)	443, 753, 806
AcsI	RAATTY	2 cut(s)	577, 887
AfaI	GTAC	3 cut(s)	139, 504, 730
AfiI	CCNNNNNNNGG	1 cut(s)	710
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	4 cut(s)	70, 118, 797, 887
AjnI	CCWGG	1 cut(s)	709
AjuI	GAANNNNNNNTTGG	2 cut(s)	708, 740
AluBI	AGCT	1 cut(s)	677
AluI	AGCT	1 cut(s)	677
Alw26I	GTCTC	3 cut(s)	526, 626, 762
AlwNI	CAGNNNCTG	1 cut(s)	842
AoxI	GGCC	2 cut(s)	628, 803
ApeKI	GCWGC	2 cut(s)	436, 677
ApoI	RAATTY	2 cut(s)	577, 887
AseI	ATTAAT	1 cut(s)	156
AspA2I	CCTAGG	1 cut(s)	23
AspS9I	GGNCC	3 cut(s)	492, 629, 803
AsuHPI	GGTGA	2 cut(s)	725, 883
AsuII	TTCGAA	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	492
AvrII	CCTAGG	1 cut(s)	23
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	888
BbvI	GCAGC	2 cut(s)	423, 664
BccI	CCATC	6 cut(s)	263, 467, 697, 752, 782, 794
BciT130I	CCWGG	1 cut(s)	711
BcoDI	GTCTC	3 cut(s)	526, 626, 762
BfaI	CTAG	2 cut(s)	24, 537
BisI	GCNGC	3 cut(s)	437, 678, 806
BlnI	CCTAGG	1 cut(s)	23
BlsI	GCNGC	3 cut(s)	438, 679, 807
Bme1390I	CCNGG	1 cut(s)	711
Bme18I	GGWCC	1 cut(s)	492
BmgT120I	GGNCC	3 cut(s)	492, 629, 803
BmiI	GGNNCC	1 cut(s)	493
BmrFI	CCNGG	1 cut(s)	711
BmrI	ACTGGG	1 cut(s)	626
BmsI	GCATC	1 cut(s)	581
BmuI	ACTGGG	1 cut(s)	626
BpiI	GAAGAC	1 cut(s)	888
Bpu14I	TTCGAA	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	23, 709
Bsc4I	CCNNNNNNNGG	1 cut(s)	710
Bse1I	ACTGG	2 cut(s)	129, 632
BseBI	CCWGG	1 cut(s)	711
BseDI	CCNNGG	2 cut(s)	23, 709
BseGI	GGATG	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	710
BseMII	CTCAG	3 cut(s)	41, 311, 619
BseNI	ACTGG	2 cut(s)	129, 632
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	2 cut(s)	423, 664
BsgI	GTGCAG	1 cut(s)	843
Bsh1236I	CGCG	2 cut(s)	445, 808
BshFI	GGCC	2 cut(s)	630, 805
BsiSI	CCGG	1 cut(s)	338
BslFI	GGGAC	2 cut(s)	505, 807
BslI	CCNNNNNNNGG	1 cut(s)	710
BsmAI	GTCTC	3 cut(s)	526, 626, 762
BsmBI	CGTCTC	1 cut(s)	626
BsmFI	GGGAC	2 cut(s)	505, 807
BsnI	GGCC	2 cut(s)	630, 805
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	120
BspACI	CCGC	3 cut(s)	443, 753, 806
BspANI	GGCC	2 cut(s)	630, 805
BspCNI	CTCAG	3 cut(s)	42, 310, 618
BspFNI	CGCG	2 cut(s)	445, 808
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	493
BspT104I	TTCGAA	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	129, 632
BssECI	CCNNGG	2 cut(s)	23, 709
BssMI	GATC	1 cut(s)	120
BssT1I	CCWWGG	1 cut(s)	23
Bst2UI	CCWGG	1 cut(s)	711
Bst4CI	ACNGT	1 cut(s)	238
BstAPI	GCANNNNNTGC	1 cut(s)	358
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	447, 843
BstDEI	CTNAG	5 cut(s)	30, 50, 297, 605, 649
BstF5I	GGATG	1 cut(s)	378
BstFNI	CGCG	2 cut(s)	445, 808
BstKTI	GATC	1 cut(s)	123
BstMAI	GTCTC	3 cut(s)	526, 626, 762
BstMBI	GATC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	2 cut(s)	358, 442
BstNI	CCWGG	1 cut(s)	711
BstNSI	RCATGY	2 cut(s)	109, 553
BstSCI	CCNGG	1 cut(s)	709
BstUI	CGCG	2 cut(s)	445, 808
BstV1I	GCAGC	2 cut(s)	423, 664
BstV2I	GAAGAC	1 cut(s)	888
BsuRI	GGCC	2 cut(s)	630, 805
BtgZI	GCGATG	1 cut(s)	801
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	136
Cac8I	GCNNGC	2 cut(s)	447, 843
CaiI	CAGNNNCTG	1 cut(s)	842
CciI	TCATGA	1 cut(s)	150
Cfr13I	GGNCC	3 cut(s)	492, 629, 803
CseI	GACGC	1 cut(s)	608
Csp6I	GTAC	3 cut(s)	138, 503, 729
CviAII	CATG	5 cut(s)	106, 151, 263, 353, 550
CviQI	GTAC	3 cut(s)	138, 503, 729
DdeI	CTNAG	5 cut(s)	30, 50, 297, 605, 649
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
Eco130I	CCWWGG	1 cut(s)	23
Eco24I	GRGCYC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	492
EcoO109I	RGGNCCY	1 cut(s)	492
EcoRII	CCWGG	1 cut(s)	709
EcoT14I	CCWWGG	1 cut(s)	23
EcoT22I	ATGCAT	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	23
Esp3I	CGTCTC	1 cut(s)	626
FaeI	CATG	5 cut(s)	109, 154, 266, 356, 553
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	2 cut(s)	505, 807
FatI	CATG	5 cut(s)	105, 150, 262, 352, 549
Fnu4HI	GCNGC	3 cut(s)	437, 678, 806
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	3 cut(s)	437, 678, 806
FspBI	CTAG	2 cut(s)	24, 537
GluI	GCNGC	3 cut(s)	437, 678, 806
HaeIII	GGCC	2 cut(s)	630, 805
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	608
Hin1II	CATG	5 cut(s)	109, 154, 266, 356, 553
HinfI	GANTC	5 cut(s)	70, 341, 519, 540, 874
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	2 cut(s)	725, 883
Hpy166II	GTNNAC	2 cut(s)	512, 716
Hpy188I	TCNGA	3 cut(s)	300, 518, 838
Hpy188III	TCNNGA	3 cut(s)	151, 537, 544
Hpy8I	GTNNAC	2 cut(s)	512, 716
HpyAV	CCTTC	2 cut(s)	167, 181
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	731
HpyCH4V	TGCA	5 cut(s)	168, 483, 553, 845, 860
HpyF10VI	GCNNNNNNNGC	2 cut(s)	358, 442
HpyF3I	CTNAG	5 cut(s)	30, 50, 297, 605, 649
HpySE526I	ACGT	1 cut(s)	731
Hsp92II	CATG	5 cut(s)	109, 154, 266, 356, 553
Kzo9I	GATC	1 cut(s)	120
Lsp1109I	GCAGC	2 cut(s)	423, 664
LweI	GCATC	1 cut(s)	581
MaeI	CTAG	2 cut(s)	24, 537
MaeII	ACGT	1 cut(s)	731
MaeIII	GTNAC	4 cut(s)	8, 241, 451, 871
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	3 cut(s)	130, 809, 888
MfeI	CAATTG	1 cut(s)	846
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	7 cut(s)	44, 65, 525, 577, 846, 866, 887
MlyI	GAGTC	2 cut(s)	528, 868
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	4 cut(s)	75, 272, 284, 320
Mph1103I	ATGCAT	1 cut(s)	555
MseI	TTAA	5 cut(s)	144, 156, 182, 228, 907
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	711
MunI	CAATTG	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	711
MvnI	CGCG	2 cut(s)	445, 808
MwoI	GCNNNNNNNGC	2 cut(s)	358, 442
NdeII	GATC	1 cut(s)	120
NlaIII	CATG	5 cut(s)	109, 154, 266, 356, 553
NlaIV	GGNNCC	1 cut(s)	493
NmuCI	GTSAC	2 cut(s)	8, 871
NsiI	ATGCAT	1 cut(s)	555
NspI	RCATGY	2 cut(s)	109, 553
NspV	TTCGAA	1 cut(s)	62
PagI	TCATGA	1 cut(s)	150
PciI	ACATGT	1 cut(s)	105
PfeI	GAWTC	3 cut(s)	70, 341, 540
PkrI	GCNGC	3 cut(s)	438, 679, 807
PleI	GAGTC	2 cut(s)	527, 868
PpsI	GAGTC	2 cut(s)	527, 868
PpuMI	RGGWCCY	1 cut(s)	492
PscI	ACATGT	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	156
PsiI	TTATAA	2 cut(s)	249, 459
Psp5II	RGGWCCY	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	709
PspGI	CCWGG	1 cut(s)	709
PspN4I	GGNNCC	1 cut(s)	493
PspPI	GGNCC	3 cut(s)	492, 629, 803
PspPPI	RGGWCCY	1 cut(s)	492
PstNI	CAGNNNCTG	1 cut(s)	842
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	3 cut(s)	139, 504, 730
RsaNI	GTAC	3 cut(s)	138, 503, 729
SaqAI	TTAA	5 cut(s)	144, 156, 182, 228, 907
SatI	GCNGC	3 cut(s)	437, 678, 806
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	3 cut(s)	492, 629, 803
SchI	GAGTC	2 cut(s)	528, 868
ScrFI	CCNGG	1 cut(s)	711
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	6 cut(s)	116, 325, 497, 679, 715, 734
SfaNI	GCATC	1 cut(s)	581
SfuI	TTCGAA	1 cut(s)	62
SinI	GGWCC	1 cut(s)	492
Sse9I	AATT	7 cut(s)	44, 65, 525, 577, 846, 866, 887
SsiI	CCGC	3 cut(s)	443, 753, 806
SspMI	CTAG	2 cut(s)	24, 537
StyD4I	CCNGG	1 cut(s)	709
StyI	CCWWGG	1 cut(s)	23
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	734
TaqI	TCGA	3 cut(s)	62, 73, 543
TasI	AATT	7 cut(s)	44, 65, 525, 577, 846, 866, 887
TatI	WGTACW	1 cut(s)	137
TauI	GCSGC	1 cut(s)	808
TfiI	GAWTC	3 cut(s)	70, 341, 540
Tru1I	TTAA	5 cut(s)	144, 156, 182, 228, 907
Tru9I	TTAA	5 cut(s)	144, 156, 182, 228, 907
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	2 cut(s)	8, 871
TseI	GCWGC	2 cut(s)	436, 677
Tsp45I	GTSAC	2 cut(s)	8, 871
TspDTI	ATGAA	4 cut(s)	57, 251, 332, 411
TspRI	CASTG	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	492
VspI	ATTAAT	1 cut(s)	156
XapI	RAATTY	2 cut(s)	577, 887
XbaI	TCTAGA	1 cut(s)	536
XceI	RCATGY	2 cut(s)	109, 553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	755
XmaJI	CCTAGG	1 cut(s)	23
XspI	CTAG	2 cut(s)	24, 537
Zsp2I	ATGCAT	1 cut(s)	555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.