Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005472.1

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

113234 .. 113689

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005472.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggagattttggggattaggcctactgttgttacttataatactatctttcatgggttttgtttgagaggcagagttggaggggctcagatgatttttggtgctatgaaagggagaggagttcagccgaattcttacatgtatggattgcttattagtgggatgtgtaaggagagaaggcttgatgaagcgtctggtctttttgataaaatgctggaaattgggctgcttccgagtgttgttacttataacaccctggttgatggttattgcaatatgggtgatccggacagggctttcggttatagagatgagatggtgaagaagggtataatgctgacggtgtcaacgtacaatttgttgtttcatggattgtttatggaaggtagggtgagtgaagctgattgtatggttagagaaatggaagagaaggaaatggttcctggtggcatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

151

Amino Acids

16.86

Weight (kDa)

5.7

Isoelectric Point (pI)

25.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	39, 249
AccIII	TCCGGA	1 cut(s)	286
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	1 cut(s)	353
AflIII	ACRYGT	1 cut(s)	138
AjnI	CCWGG	2 cut(s)	255, 442
AluBI	AGCT	1 cut(s)	401
AluI	AGCT	1 cut(s)	401
AlwI	GGATC	1 cut(s)	278
Aor13HI	TCCGGA	1 cut(s)	286
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	226
ApoI	RAATTY	1 cut(s)	130
ArsI	GACNNNNNNTTYG	2 cut(s)	281, 313
Asp700I	GAANNNNTTC	1 cut(s)	438
AsuHPI	GGTGA	3 cut(s)	293, 331, 403
BanII	GRGCYC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	213
BccI	CCATC	2 cut(s)	257, 310
BciT130I	CCWGG	2 cut(s)	257, 444
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	2 cut(s)	257, 444
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	2 cut(s)	257, 444
BsaJI	CCNNGG	1 cut(s)	255
BsaWI	WCCGGW	1 cut(s)	286
BseAI	TCCGGA	1 cut(s)	286
BseBI	CCWGG	2 cut(s)	257, 444
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	132
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	287
BsnI	GGCC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp13I	TCCGGA	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	283
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	100
BspEI	TCCGGA	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	441
BspPI	GGATC	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	255
BssMI	GATC	1 cut(s)	283
Bst2UI	CCWGG	2 cut(s)	257, 444
Bst4CI	ACNGT	2 cut(s)	28, 343
Bst6I	CTCTTC	1 cut(s)	420
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	283
BstNI	CCWGG	2 cut(s)	257, 444
BstNSI	RCATGY	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	255, 442
BstV1I	GCAGC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	168
CseI	GACGC	1 cut(s)	180
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	3 cut(s)	53, 139, 368
CviJI	RGCY	7 cut(s)	22, 86, 127, 181, 226, 296, 401
CviKI_1	RGCY	7 cut(s)	22, 86, 127, 181, 226, 296, 401
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	22
Eco24I	GRGCYC	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	255, 442
EcoT38I	GRGCYC	1 cut(s)	88
FaeI	CATG	3 cut(s)	56, 142, 371
FatI	CATG	3 cut(s)	52, 138, 367
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	175
FriOI	GRGCYC	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	287
HgaI	GACGC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	56, 142, 371
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	3 cut(s)	293, 331, 403
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	2 cut(s)	90, 234
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	4 cut(s)	171, 319, 377, 424
HpyCH4III	ACNGT	2 cut(s)	28, 343
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	1 cut(s)	273
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	3 cut(s)	56, 142, 371
Kpn2I	TCCGGA	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	283
LpnPI	CCDG	7 cut(s)	180, 200, 242, 269, 277, 300, 429
Lsp1109I	GCAGC	1 cut(s)	213
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	2 cut(s)	31, 241
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	334, 437
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	3 cut(s)	130, 219, 355
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	3 cut(s)	62, 74, 110
MroI	TCCGGA	1 cut(s)	286
MroXI	GAANNNNTTC	1 cut(s)	438
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	2 cut(s)	257, 444
MvaI	CCWGG	2 cut(s)	257, 444
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	3 cut(s)	56, 142, 371
NlaIV	GGNNCC	1 cut(s)	441
NspI	RCATGY	1 cut(s)	142
PceI	AGGCCT	1 cut(s)	22
PciI	ACATGT	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	438
PflFI	GACNNNGTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	228
PscI	ACATGT	1 cut(s)	138
PsiI	TTATAA	2 cut(s)	39, 249
Psp6I	CCWGG	2 cut(s)	255, 442
PspGI	CCWGG	2 cut(s)	255, 442
PspN4I	GGNNCC	1 cut(s)	441
PsyI	GACNNNGTC	1 cut(s)	343
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	1 cut(s)	283
ScrFI	CCNGG	2 cut(s)	257, 444
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	3 cut(s)	353, 388, 403
Sse9I	AATT	3 cut(s)	130, 219, 355
SseBI	AGGCCT	1 cut(s)	22
StuI	AGGCCT	1 cut(s)	22
StyD4I	CCNGG	2 cut(s)	255, 442
TaaI	ACNGT	2 cut(s)	28, 343
TaiI	ACGT	1 cut(s)	353
TasI	AATT	3 cut(s)	130, 219, 355
TseI	GCWGC	1 cut(s)	226
TspDTI	ATGAA	4 cut(s)	41, 122, 201, 356
Tth111I	GACNNNGTC	1 cut(s)	343
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.