Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010278.1

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

19497 .. 23241

Gene Structure 3745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010278.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ctgttcactcacccaaccagaccctccacccatcagccaccactctctcctcaactccatccaaacttgtcagtggcaattcatcgaacaccttccgcccaaccctccctcctctctggtctcccaaaccctcttccatctccaccaaagccctcaccttgtccatcaattcacatcccacatcgactccgcctcgaaatcgaaacccaatgcctcgccgtcgccattgtcaccgccctgccttccccaaaatcctccctggagctcctgaagcaactcctcggcagcggcattgctccgattcgagacgttttcgactcgctggctcgtgcccgagtgcgtttgggtgcccaaagcggcgtcgttttggacttgctggtaagtgcttgctgtgaattgaagagagctgatgacgcttttgagtgctttagcttgatgacgagtgtcaatgttatgcctaggactaagacttgtaatgaattgttgagtttgttttcgaaattgaatcgaaccgagagggcttgggttttgtatgctgacatgtttaggttgaaaatcaagtcgagtgtttgtacttttaacatcatgattaatgtgttgtgcaaagaaggcaagttaaagaaggcaaaggagtttcttgggtttatggaggttttggggattaagcctactgttgttacttataatactatcattcatggtgctatgctggaaattgggctgcttccgatcgctgttacttataacacattgattgaccgttattgcaataacggtgatctaaacagggctttcggttatagagatgagatggtgaagaagggtataatgccgacggtgtcaacttacaatttgttgattcatgaattgttcatggaaggtagggtgagtgaagctgattgggtttatgaagaacgtcttcctggacctggcagtccagccctggcttggtcggtgacgccgtcgccaccgccatcaaggcaggatatcggcatattgattgtgctccactctatggcaatgagaaggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

344

Amino Acids

38.12

Weight (kDa)

9.23

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	684, 744
AasI	GACNNNNNNGTC	1 cut(s)	933
AccB1I	GGYRCC	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	1015
AciI	CCGC	6 cut(s)	96, 190, 234, 288, 357, 971
AcuI	CTGAAG	1 cut(s)	290
AcyI	GRCGYC	2 cut(s)	360, 959
AfaI	GTAC	1 cut(s)	574
AfiI	CCNNNNNNNGG	3 cut(s)	929, 948, 1015
AflIII	ACRYGT	1 cut(s)	540
AgsI	TTSAA	3 cut(s)	400, 505, 553
AjnI	CCWGG	4 cut(s)	258, 922, 928, 942
AluBI	AGCT	4 cut(s)	265, 407, 432, 896
AluI	AGCT	4 cut(s)	265, 407, 432, 896
Alw21I	GWGCWC	2 cut(s)	267, 1008
Alw26I	GTCTC	2 cut(s)	125, 300
Ama87I	CYCGRG	1 cut(s)	333
ApeKI	GCWGC	2 cut(s)	285, 721
AseI	ATTAAT	1 cut(s)	591
Asp700I	GAANNNNTTC	2 cut(s)	91, 918
AspA2I	CCTAGG	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	926
AsuHPI	GGTGA	6 cut(s)	147, 223, 788, 826, 898, 967
AsuII	TTCGAA	1 cut(s)	497
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	1 cut(s)	926
AvrII	CCTAGG	1 cut(s)	458
BaeGI	GKGCMC	2 cut(s)	334, 352
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	911
Bbv12I	GWGCWC	2 cut(s)	267, 1008
BbvI	GCAGC	2 cut(s)	297, 708
BccI	CCATC	6 cut(s)	39, 66, 145, 172, 805, 982
BceAI	ACGGC	2 cut(s)	203, 946
BciT130I	CCWGG	4 cut(s)	260, 924, 930, 944
BcoDI	GTCTC	2 cut(s)	125, 300
BfaI	CTAG	1 cut(s)	459
BglI	GCCNNNNNGGC	1 cut(s)	979
BisI	GCNGC	4 cut(s)	286, 289, 358, 722
BlnI	CCTAGG	1 cut(s)	458
BlsI	GCNGC	4 cut(s)	287, 290, 359, 723
Bme1390I	CCNGG	4 cut(s)	260, 924, 930, 944
Bme18I	GGWCC	1 cut(s)	926
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	1 cut(s)	926
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	4 cut(s)	260, 924, 930, 944
BoxI	GACNNNNGTC	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	911
BpmI	CTGGAG	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	497
BsaHI	GRCGYC	2 cut(s)	360, 959
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	4 cut(s)	258, 280, 458, 942
BsaXI	ACNNNNNCTCC	4 cut(s)	93, 123, 171, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	929, 948, 1015
Bse3DI	GCAATG	2 cut(s)	291, 1026
BseBI	CCWGG	4 cut(s)	260, 924, 930, 944
BseDI	CCNNGG	4 cut(s)	258, 280, 458, 942
BseGI	GGATG	2 cut(s)	58, 174
BseLI	CCNNNNNNNGG	3 cut(s)	929, 948, 1015
BseMI	GCAATG	2 cut(s)	291, 1026
BseRI	GAGGAG	3 cut(s)	39, 101, 269
BseSI	GKGCMC	2 cut(s)	334, 352
BseXI	GCAGC	2 cut(s)	297, 708
Bsh1285I	CGRYCG	1 cut(s)	732
BshNI	GGYRCC	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	732
BsiHKAI	GWGCWC	2 cut(s)	267, 1008
BsiHKCI	CYCGRG	1 cut(s)	333
BslI	CCNNNNNNNGG	3 cut(s)	929, 948, 1015
BsmAI	GTCTC	2 cut(s)	125, 300
BsmBI	CGTCTC	1 cut(s)	300
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	333
Bsp119I	TTCGAA	1 cut(s)	497
Bsp1286I	GDGCHC	4 cut(s)	267, 334, 352, 1008
Bsp143I	GATC	2 cut(s)	729, 778
BspACI	CCGC	6 cut(s)	96, 190, 234, 288, 357, 971
BspHI	TCATGA	2 cut(s)	585, 862
BspLI	GGNNCC	1 cut(s)	349
BspT104I	TTCGAA	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	347
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	2 cut(s)	291, 1026
BssECI	CCNNGG	4 cut(s)	258, 280, 458, 942
BssMI	GATC	2 cut(s)	729, 778
BssNI	GRCGYC	2 cut(s)	360, 959
BssSI	CACGAG	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	458
Bst2BI	CACGAG	1 cut(s)	327
Bst2UI	CCWGG	4 cut(s)	260, 924, 930, 944
Bst4CI	ACNGT	4 cut(s)	673, 761, 776, 838
Bst6I	CTCTTC	2 cut(s)	138, 395
BstACI	GRCGYC	2 cut(s)	360, 959
BstBI	TTCGAA	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	324, 388
BstDEI	CTNAG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	58, 174
BstKTI	GATC	2 cut(s)	732, 781
BstMAI	GTCTC	2 cut(s)	125, 300
BstMBI	GATC	2 cut(s)	729, 778
BstMCI	CGRYCG	1 cut(s)	732
BstMWI	GCNNNNNNNGC	4 cut(s)	271, 413, 609, 979
BstNI	CCWGG	4 cut(s)	260, 924, 930, 944
BstNSI	RCATGY	1 cut(s)	544
BstPAI	GACNNNNGTC	1 cut(s)	443
BstSCI	CCNGG	4 cut(s)	258, 922, 928, 942
BstSLI	GKGCMC	2 cut(s)	334, 352
BstV1I	GCAGC	2 cut(s)	297, 708
BstV2I	GAAGAC	1 cut(s)	911
BtsCI	GGATG	2 cut(s)	58, 174
BtsIMutI	CAGTG	1 cut(s)	78
Cac8I	GCNNGC	2 cut(s)	324, 388
CciI	TCATGA	2 cut(s)	585, 862
Cfr13I	GGNCC	1 cut(s)	926
CseI	GACGC	3 cut(s)	349, 422, 967
Csp6I	GTAC	1 cut(s)	573
CviAII	CATG	5 cut(s)	541, 586, 698, 863, 874
CviQI	GTAC	1 cut(s)	573
DdeI	CTNAG	1 cut(s)	465
DpnI	GATC	2 cut(s)	731, 780
DpnII	GATC	2 cut(s)	729, 778
DrdI	GACNNNNNNGTC	1 cut(s)	933
DseDI	GACNNNNNNGTC	1 cut(s)	933
Eam1104I	CTCTTC	2 cut(s)	138, 395
EarI	CTCTTC	2 cut(s)	138, 395
EciI	GGCGGA	2 cut(s)	85, 179
Ecl136II	GAGCTC	1 cut(s)	265
Eco130I	CCWWGG	1 cut(s)	458
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	988
Eco47I	GGWCC	1 cut(s)	926
Eco53kI	GAGCTC	1 cut(s)	265
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	265
EcoRII	CCWGG	4 cut(s)	258, 922, 928, 942
EcoRV	GATATC	1 cut(s)	988
EcoT14I	CCWWGG	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	458
Esp3I	CGTCTC	1 cut(s)	300
FaeI	CATG	5 cut(s)	544, 589, 701, 866, 877
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FatI	CATG	5 cut(s)	540, 585, 697, 862, 873
Fnu4HI	GCNGC	4 cut(s)	286, 289, 358, 722
FokI	GGATG	2 cut(s)	45, 161
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	4 cut(s)	286, 289, 358, 722
FspBI	CTAG	1 cut(s)	459
GluI	GCNGC	4 cut(s)	286, 289, 358, 722
GsuI	CTGGAG	1 cut(s)	281
HgaI	GACGC	3 cut(s)	349, 422, 967
Hin1I	GRCGYC	2 cut(s)	360, 959
Hin1II	CATG	5 cut(s)	544, 589, 701, 866, 877
HincII	GTYRAC	1 cut(s)	843
HindII	GTYRAC	1 cut(s)	843
HinfI	GANTC	5 cut(s)	186, 301, 317, 505, 859
HphI	GGTGA	6 cut(s)	147, 223, 788, 826, 898, 967
Hpy166II	GTNNAC	2 cut(s)	6, 843
Hpy188I	TCNGA	2 cut(s)	300, 729
Hpy188III	TCNNGA	4 cut(s)	268, 305, 586, 863
Hpy8I	GTNNAC	2 cut(s)	6, 843
Hpy99I	CGWCG	4 cut(s)	224, 365, 838, 967
HpyAV	CCTTC	7 cut(s)	102, 252, 602, 616, 814, 872, 1020
HpyCH4III	ACNGT	4 cut(s)	673, 761, 776, 838
HpyCH4IV	ACGT	2 cut(s)	309, 916
HpyCH4V	TGCA	2 cut(s)	603, 768
HpyF10VI	GCNNNNNNNGC	4 cut(s)	271, 413, 609, 979
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	2 cut(s)	309, 916
Hsp92I	GRCGYC	2 cut(s)	360, 959
Hsp92II	CATG	5 cut(s)	544, 589, 701, 866, 877
Kzo9I	GATC	2 cut(s)	729, 778
LmnI	GCTCC	4 cut(s)	262, 270, 301, 1011
Lsp1109I	GCAGC	2 cut(s)	297, 708
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	2 cut(s)	309, 916
MaeIII	GTNAC	4 cut(s)	229, 676, 736, 955
MalI	GATC	2 cut(s)	731, 780
MboI	GATC	2 cut(s)	729, 778
MboII	GAAGA	5 cut(s)	125, 412, 829, 911, 923
MhlI	GDGCHC	4 cut(s)	267, 334, 352, 1008
MluCI	AATT	8 cut(s)	78, 168, 395, 479, 500, 714, 850, 866
MlyI	GAGTC	2 cut(s)	180, 311
MroXI	GAANNNNTTC	2 cut(s)	91, 918
MseI	TTAA	4 cut(s)	579, 591, 617, 663
MspA1I	CMGCKG	1 cut(s)	288
MspR9I	CCNGG	4 cut(s)	260, 924, 930, 944
MvaI	CCWGG	4 cut(s)	260, 924, 930, 944
MwoI	GCNNNNNNNGC	4 cut(s)	271, 413, 609, 979
NdeII	GATC	2 cut(s)	729, 778
NlaIII	CATG	5 cut(s)	544, 589, 701, 866, 877
NlaIV	GGNNCC	1 cut(s)	349
NmeAIII	GCCGAG	1 cut(s)	261
NmuCI	GTSAC	2 cut(s)	229, 955
NspI	RCATGY	1 cut(s)	544
NspV	TTCGAA	1 cut(s)	497
PagI	TCATGA	2 cut(s)	585, 862
PciI	ACATGT	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	959
PdmI	GAANNNNTTC	2 cut(s)	91, 918
PfeI	GAWTC	3 cut(s)	301, 505, 859
PflFI	GACNNNGTC	2 cut(s)	838, 961
PflMI	CCANNNNNTGG	1 cut(s)	1015
PfoI	TCCNGGA	1 cut(s)	922
PkrI	GCNGC	4 cut(s)	287, 290, 359, 723
Ple19I	CGATCG	1 cut(s)	732
PleI	GAGTC	2 cut(s)	180, 311
PpsI	GAGTC	2 cut(s)	180, 311
PscI	ACATGT	1 cut(s)	540
PshAI	GACNNNNGTC	1 cut(s)	443
PshBI	ATTAAT	1 cut(s)	591
PsiI	TTATAA	2 cut(s)	684, 744
Psp124BI	GAGCTC	1 cut(s)	267
Psp6I	CCWGG	4 cut(s)	258, 922, 928, 942
PspGI	CCWGG	4 cut(s)	258, 922, 928, 942
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	926
PsyI	GACNNNGTC	2 cut(s)	838, 961
PvuI	CGATCG	1 cut(s)	732
RsaI	GTAC	1 cut(s)	574
RsaNI	GTAC	1 cut(s)	573
SacI	GAGCTC	1 cut(s)	267
SaqAI	TTAA	4 cut(s)	579, 591, 617, 663
SatI	GCNGC	4 cut(s)	286, 289, 358, 722
Sau3AI	GATC	2 cut(s)	729, 778
Sau96I	GGNCC	1 cut(s)	926
SchI	GAGTC	2 cut(s)	180, 311
ScrFI	CCNGG	4 cut(s)	260, 924, 930, 944
SduI	GDGCHC	4 cut(s)	267, 334, 352, 1008
SfuI	TTCGAA	1 cut(s)	497
SinI	GGWCC	1 cut(s)	926
Sse9I	AATT	8 cut(s)	78, 168, 395, 479, 500, 714, 850, 866
SsiI	CCGC	6 cut(s)	96, 190, 234, 288, 357, 971
SspMI	CTAG	1 cut(s)	459
SstI	GAGCTC	1 cut(s)	267
StyD4I	CCNGG	4 cut(s)	258, 922, 928, 942
StyI	CCWWGG	1 cut(s)	458
TaaI	ACNGT	4 cut(s)	673, 761, 776, 838
TaiI	ACGT	2 cut(s)	312, 919
TaqI	TCGA	9 cut(s)	85, 184, 195, 201, 304, 315, 497, 508, 563
TasI	AATT	8 cut(s)	78, 168, 395, 479, 500, 714, 850, 866
TatI	WGTACW	1 cut(s)	572
TauI	GCSGC	2 cut(s)	291, 360
TfiI	GAWTC	3 cut(s)	301, 505, 859
Tru1I	TTAA	4 cut(s)	579, 591, 617, 663
Tru9I	TTAA	4 cut(s)	579, 591, 617, 663
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	229, 955
TseI	GCWGC	2 cut(s)	285, 721
Tsp45I	GTSAC	2 cut(s)	229, 955
TspDTI	ATGAA	7 cut(s)	71, 492, 686, 851, 862, 879, 924
TspRI	CASTG	1 cut(s)	78
Tth111I	GACNNNGTC	2 cut(s)	838, 961
Van91I	CCANNNNNTGG	1 cut(s)	1015
VpaK11BI	GGWCC	1 cut(s)	926
VspI	ATTAAT	1 cut(s)	591
XceI	RCATGY	1 cut(s)	544
XcmI	CCANNNNNNNNNTGG	1 cut(s)	945
XmaJI	CCTAGG	1 cut(s)	458
XmnI	GAANNNNTTC	2 cut(s)	91, 918
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.