Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

37844244 .. 37845005

Gene Structure 762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49675

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGCCTCGGCAGCGGCATTGCTCCTATCTGAGACGTTTTCGACTCGCTGGCTCGTGCCCGATTGGGCAAAGCGGTGTCGTTTTGGACTTGCTGGTAAGTTCTTGCTGTGAATTGAAGAGTGCCGATGAGGCTTTTGAGTGCTTTAACTTGATGACGAGTGGAAATATTATGCCTAAGACTGAGCCTTGTAATGAATTGTTGAGTTTGTTTTCGAAATTGAATCGAACCGAGAGGGCTTGGGTTTTGTATGCTGACATGTTTGGGTTGAAGATCAAGTCCAGTGTTTGTACTTTTAACATCATGATTAATGTGTTGTGCAAAGAAGGCAAGTTGAACAAGGCAAAGGAGTTTCTTGGGTTTATGAGATTTTGGGGATTAAGCCAGCCTACTGTTGTTACTTATAATACTATCATTCATGGGTTTTGTTTGAGAGGCAGAGTTGGAGGGGCTCAGATGATTTTTGGTGCTATGAAAGGGAGAGGAGTTCAGCGGGATTCTTACACGTATGGATTGCTTATTAGTGGGATGTGTAAGGAGAGAAGGCTTGATGAAGCGTCTGGTCTTTTTGATAAAATGCTGGAAATTGGGCTGCTTCCGAGTGCTGTTACTTATAACACCCTGATTGATGGTTATTGCAATAAGGGTGACCTGGACAAGGCTTTCGGTTATAGAGATGAGATGGTGAACAAGGGTATAATGCCGACGGTTTCAACGTACAATTTGTTGTTTCATGGATTGTTTATGGAAGGTGCCATTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

253

Amino Acids

28.38

Weight (kDa)

8.84

Isoelectric Point (pI)

37.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	63 - 107	8.4e-09	PPR repeat family
PPR_1	PF12854	92 - 122	3.9e-09	PPR repeat
PPR_2	PF13041	94 - 126	1.4e-06	PPR repeat family
PPR	PF01535	97 - 125	6.3e-06	PPR repeat
PPR_1	PF12854	128 - 158	5.6e-10	PPR repeat
PPR_2	PF13041	129 - 178	1.3e-15	PPR repeat family
PPR	PF01535	132 - 162	2.9e-06	PPR repeat
PPR_long	PF17177	152 - 242	1e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	153 - 209	1.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	160 - 192	1.7e-10	PPR repeat
PPR	PF01535	167 - 197	2.5e-07	PPR repeat
PPR_2	PF13041	170 - 208	1.9e-09	PPR repeat family
PPR_3	PF13812	188 - 242	2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	196 - 228	5.6e-13	PPR repeat
PPR_2	PF13041	199 - 246	1.4e-17	PPR repeat family
PPR	PF01535	202 - 232	4.7e-10	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	402, 612
AccB1I	GGYRCC	1 cut(s)	749
AciI	CCGC	3 cut(s)	13, 72, 490
AfaI	GTAC	2 cut(s)	289, 716
AfiI	CCNNNNNNNGG	1 cut(s)	655
AflIII	ACRYGT	2 cut(s)	255, 501
AgsI	TTSAA	5 cut(s)	115, 220, 268, 334, 711
AjnI	CCWGG	1 cut(s)	648
Alw26I	GTCTC	1 cut(s)	25
ApeKI	GCWGC	2 cut(s)	10, 589
ArsI	GACNNNNNNTTYG	2 cut(s)	644, 676
AseI	ATTAAT	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	656, 694
AsuII	TTCGAA	1 cut(s)	212
BaeGI	GKGCMC	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	749
BanII	GRGCYC	1 cut(s)	451
BauI	CACGAG	1 cut(s)	52
BbvI	GCAGC	2 cut(s)	22, 576
BccI	CCATC	2 cut(s)	620, 673
BciT130I	CCWGG	1 cut(s)	650
BcoDI	GTCTC	1 cut(s)	25
BglI	GCCNNNNNGGC	1 cut(s)	128
BisI	GCNGC	3 cut(s)	11, 14, 590
BlsI	GCNGC	3 cut(s)	12, 15, 591
Bme1390I	CCNGG	1 cut(s)	650
BmiI	GGNNCC	1 cut(s)	751
BmrFI	CCNGG	1 cut(s)	650
Bpu14I	TTCGAA	1 cut(s)	212
BsaAI	YACGTR	1 cut(s)	504
BsaJI	CCNNGG	1 cut(s)	5
Bsc4I	CCNNNNNNNGG	1 cut(s)	655
Bse1I	ACTGG	1 cut(s)	279
Bse3DI	GCAATG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	650
BseDI	CCNNGG	1 cut(s)	5
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	1 cut(s)	655
BseMI	GCAATG	1 cut(s)	16
BseMII	CTCAG	3 cut(s)	20, 171, 464
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	495
BseSI	GKGCMC	1 cut(s)	59
BseXI	GCAGC	2 cut(s)	22, 576
BshNI	GGYRCC	1 cut(s)	749
BslI	CCNNNNNNNGG	1 cut(s)	655
BsmAI	GTCTC	1 cut(s)	25
BsmBI	CGTCTC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	212
Bsp1286I	GDGCHC	2 cut(s)	59, 451
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	3 cut(s)	13, 72, 490
BspCNI	CTCAG	3 cut(s)	21, 172, 463
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	751
BspT104I	TTCGAA	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	749
BsrDI	GCAATG	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	279
BssECI	CCNNGG	1 cut(s)	5
BssMI	GATC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	52
Bst2BI	CACGAG	1 cut(s)	52
Bst2UI	CCWGG	1 cut(s)	650
Bst4CI	ACNGT	2 cut(s)	391, 706
Bst6I	CTCTTC	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	504
BstBI	TTCGAA	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	49, 383
BstDEI	CTNAG	4 cut(s)	29, 174, 180, 450
BstEII	GGTNACC	1 cut(s)	644
BstENI	CCTNNNNNAGG	1 cut(s)	653
BstF5I	GGATG	1 cut(s)	531
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 128, 324
BstNI	CCWGG	1 cut(s)	650
BstNSI	RCATGY	1 cut(s)	259
BstPI	GGTNACC	1 cut(s)	644
BstSCI	CCNGG	1 cut(s)	648
BstSLI	GKGCMC	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	22, 576
BtsCI	GGATG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	49, 383
CciI	TCATGA	1 cut(s)	300
CseI	GACGC	1 cut(s)	543
Csp6I	GTAC	2 cut(s)	288, 715
CviAII	CATG	4 cut(s)	256, 301, 416, 731
CviQI	GTAC	2 cut(s)	288, 715
DdeI	CTNAG	4 cut(s)	29, 174, 180, 450
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Eco24I	GRGCYC	1 cut(s)	451
Eco91I	GGTNACC	1 cut(s)	644
EcoNI	CCTNNNNNAGG	1 cut(s)	653
EcoO65I	GGTNACC	1 cut(s)	644
EcoRII	CCWGG	1 cut(s)	648
EcoT38I	GRGCYC	1 cut(s)	451
Esp3I	CGTCTC	1 cut(s)	25
FaeI	CATG	4 cut(s)	259, 304, 419, 734
FatI	CATG	4 cut(s)	255, 300, 415, 730
FauI	CCCGC	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	11, 14, 590
FokI	GGATG	1 cut(s)	538
FriOI	GRGCYC	1 cut(s)	451
Fsp4HI	GCNGC	3 cut(s)	11, 14, 590
GluI	GCNGC	3 cut(s)	11, 14, 590
HgaI	GACGC	1 cut(s)	543
Hin1II	CATG	4 cut(s)	259, 304, 419, 734
HinfI	GANTC	3 cut(s)	42, 220, 494
HphI	GGTGA	2 cut(s)	656, 694
Hpy166II	GTNNAC	1 cut(s)	685
Hpy188I	TCNGA	3 cut(s)	30, 453, 597
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	1 cut(s)	685
Hpy99I	CGWCG	1 cut(s)	706
HpyAV	CCTTC	3 cut(s)	317, 534, 740
HpyCH4III	ACNGT	2 cut(s)	391, 706
HpyCH4IV	ACGT	3 cut(s)	34, 503, 713
HpyCH4V	TGCA	2 cut(s)	318, 636
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 128, 324
HpyF3I	CTNAG	4 cut(s)	29, 174, 180, 450
HpySE526I	ACGT	3 cut(s)	34, 503, 713
Hsp92II	CATG	4 cut(s)	259, 304, 419, 734
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	9 cut(s)	33, 77, 292, 395, 543, 563, 632, 635, 662
Lsp1109I	GCAGC	2 cut(s)	22, 576
MaeII	ACGT	3 cut(s)	34, 503, 713
MaeIII	GTNAC	3 cut(s)	394, 604, 644
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	2 cut(s)	127, 280
MhlI	GDGCHC	2 cut(s)	59, 451
MluCI	AATT	5 cut(s)	110, 194, 215, 582, 718
MlyI	GAGTC	1 cut(s)	36
MmeI	TCCRAC	1 cut(s)	421
MnlI	CCTC	6 cut(s)	15, 121, 225, 425, 437, 473
MseI	TTAA	4 cut(s)	144, 294, 306, 377
MspA1I	CMGCKG	2 cut(s)	13, 490
MspR9I	CCNGG	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	650
MwoI	GCNNNNNNNGC	3 cut(s)	10, 128, 324
NdeII	GATC	1 cut(s)	270
NlaIII	CATG	4 cut(s)	259, 304, 419, 734
NlaIV	GGNNCC	1 cut(s)	751
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	1 cut(s)	259
NspV	TTCGAA	1 cut(s)	212
PagI	TCATGA	1 cut(s)	300
PciI	ACATGT	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	1 cut(s)	710
PfeI	GAWTC	2 cut(s)	220, 494
PkrI	GCNGC	3 cut(s)	12, 15, 591
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Ppu21I	YACGTR	1 cut(s)	504
PscI	ACATGT	1 cut(s)	255
PshBI	ATTAAT	1 cut(s)	306
PsiI	TTATAA	2 cut(s)	402, 612
Psp6I	CCWGG	1 cut(s)	648
PspEI	GGTNACC	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	648
PspN4I	GGNNCC	1 cut(s)	751
RsaI	GTAC	2 cut(s)	289, 716
RsaNI	GTAC	2 cut(s)	288, 715
SaqAI	TTAA	4 cut(s)	144, 294, 306, 377
SatI	GCNGC	3 cut(s)	11, 14, 590
Sau3AI	GATC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	650
SduI	GDGCHC	2 cut(s)	59, 451
SetI	ASST	5 cut(s)	37, 506, 651, 716, 751
SfuI	TTCGAA	1 cut(s)	212
Sse9I	AATT	5 cut(s)	110, 194, 215, 582, 718
SsiI	CCGC	3 cut(s)	13, 72, 490
SspI	AATATT	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	391, 706
TaiI	ACGT	3 cut(s)	37, 506, 716
TaqI	TCGA	3 cut(s)	40, 212, 223
TasI	AATT	5 cut(s)	110, 194, 215, 582, 718
TatI	WGTACW	1 cut(s)	287
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	2 cut(s)	220, 494
Tru1I	TTAA	4 cut(s)	144, 294, 306, 377
Tru9I	TTAA	4 cut(s)	144, 294, 306, 377
TscAI	CASTG	1 cut(s)	286
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	2 cut(s)	10, 589
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	5 cut(s)	207, 404, 485, 564, 719
TspRI	CASTG	1 cut(s)	286
VspI	ATTAAT	1 cut(s)	306
XagI	CCTNNNNNAGG	1 cut(s)	653
XceI	RCATGY	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.