Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

47757722 .. 47761041

Gene Structure 3320 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20171

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGTTTAGGTTGAAGATCAAGTCCAGTGTTTCTACTTTTTACATCATGATTAATGTGTTGTGTAAACAAGGCAAGTTGAACAAGGCGAAGGAGTTTCTTGGGTTTATGGAGGCCTACTGTTGTTGCAGAGTTGGAGGGGCTCAGATGATCTTTAGTGCTATCAAAGGTAGAGGTGTTCAGCCGGATTCTTACATGTATGGATTGCTTCTTAGTGGGATGTGCAAGCAAGGAAGACTTGCTGAAGCATCCGGTCTTTTTGATAAAATGCTGCAAATCGGGCTGCTTCCGATTGCTGTTACTTATAACACGTTGATTGATGGTTATTGCAATAAGGGTGATCTGGACAGGGCTTTTGGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCGACGGGAATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGCTATTGCAAGTCTGGGAATGCAAAGAAAGTGTTTGTCCTTCGCGATGAAATGTTGAGTAAAGGGATAGAGCCCACTAAGGAAACTTATACTTCACTTATTTATGTTTTGAGTAAAAGGAAGAGAATGAATGAGGCAGATGACTTGTTTGAGAGGATATTGTGTGAGGGTGTTCTGCCAGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCATGCATTTTCGCTTTTGAGGCAGATGGATAAAATGAAGGTTCATCCAGATGAAGTGACGTACAATACCCTAATGCAAGGGCGCTGCAGGGCAGGGAAAGTTCAGGAAGCTCGAGAACTTCTGGATGAGATAAAGACAAGGGGAATTAAGAGTGATTACATTAGGTACAACACCCTCATTAGTGGACATAGTAAGCGAGGTGATATGAATGTTGCCTTCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

300

Amino Acids

33.8

Weight (kDa)

9.1

Isoelectric Point (pI)

21.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	7 - 37	4e-06	PPR repeat
PPR_3	PF13812	50 - 105	1.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	57 - 89	1.1e-09	PPR repeat
PPR_1	PF12854	93 - 125	3.5e-11	PPR repeat
PPR_2	PF13041	98 - 132	9e-11	PPR repeat family
PPR	PF01535	99 - 129	8.4e-10	PPR repeat
PPR_1	PF12854	133 - 164	4.5e-11	PPR repeat
PPR_3	PF13812	133 - 185	3.4e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	136 - 184	8.2e-16	PPR repeat family
PPR	PF01535	139 - 169	9e-09	PPR repeat
PPR_long	PF17177	176 - 293	1.2e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	202 - 251	4.3e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	203 - 234	1.2e-10	PPR repeat
PPR_2	PF13041	206 - 255	4.3e-17	PPR repeat family
PPR	PF01535	209 - 238	2.3e-07	PPR repeat
TPR_24	PF23276	209 - 299	4e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	239 - 269	3.8e-11	PPR repeat
PPR_2	PF13041	241 - 277	3.9e-10	PPR repeat family
PPR	PF01535	244 - 274	8.4e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	303
AccII	CGCG	1 cut(s)	483
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	2 cut(s)	737, 842
AflIII	ACRYGT	2 cut(s)	192, 306
AgsI	TTSAA	4 cut(s)	13, 79, 634, 895
AluBI	AGCT	1 cut(s)	785
AluI	AGCT	1 cut(s)	785
Ama87I	CYCGRG	1 cut(s)	786
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	268, 280, 759
ArsI	GACNNNNNNTTYG	2 cut(s)	335, 367
AseI	ATTAAT	2 cut(s)	51, 435
AspLEI	GCGC	1 cut(s)	759
AsuHPI	GGTGA	3 cut(s)	347, 385, 887
AvaI	CYCGRG	1 cut(s)	786
BanII	GRGCYC	2 cut(s)	142, 513
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	255, 267, 746
BccI	CCATC	4 cut(s)	311, 364, 641, 694
BfmI	CTRYAG	1 cut(s)	760
BfoI	RGCGCY	1 cut(s)	760
BglII	AGATCT	1 cut(s)	619
BisI	GCNGC	3 cut(s)	269, 281, 760
BlsI	GCNGC	3 cut(s)	270, 282, 761
BmeT110I	CYCGRG	1 cut(s)	786
BmiI	GGNNCC	1 cut(s)	405
BmsI	GCATC	2 cut(s)	254, 400
BpiI	GAAGAC	1 cut(s)	238
BsaAI	YACGTR	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	24
BseGI	GGATG	4 cut(s)	222, 245, 718, 805
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	255, 267, 746
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	1 cut(s)	113
BsiHKCI	CYCGRG	1 cut(s)	786
BsiSI	CCGG	2 cut(s)	182, 249
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	786
Bsp1286I	GDGCHC	2 cut(s)	142, 513
Bsp143I	GATC	4 cut(s)	15, 147, 337, 619
Bsp68I	TCGCGA	1 cut(s)	483
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	154
BspFNI	CGCG	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	405
BspMAI	CTGCAG	1 cut(s)	764
BsrI	ACTGG	1 cut(s)	24
BssMI	GATC	4 cut(s)	15, 147, 337, 619
Bst4CI	ACNGT	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	554
BstBAI	YACGTR	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	224, 678
BstDEI	CTNAG	3 cut(s)	141, 209, 516
BstF5I	GGATG	4 cut(s)	222, 245, 718, 805
BstFNI	CGCG	1 cut(s)	483
BstH2I	RGCGCY	1 cut(s)	760
BstHHI	GCGC	1 cut(s)	759
BstKTI	GATC	4 cut(s)	18, 150, 340, 622
BstMBI	GATC	4 cut(s)	15, 147, 337, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 694
BstNSI	RCATGY	2 cut(s)	196, 680
BstSFI	CTRYAG	1 cut(s)	760
BstSNI	TACGTA	1 cut(s)	420
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	3 cut(s)	255, 267, 746
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	619
BstYI	RGATCY	1 cut(s)	619
BsuRI	GGCC	1 cut(s)	113
BtgZI	GCGATG	1 cut(s)	498
BtsCI	GGATG	4 cut(s)	222, 245, 718, 805
BtsIMutI	CAGTG	1 cut(s)	31
BtuMI	TCGCGA	1 cut(s)	483
Cac8I	GCNNGC	2 cut(s)	224, 678
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	759
Csp6I	GTAC	2 cut(s)	736, 841
CviAII	CATG	3 cut(s)	46, 193, 677
CviJI	RGCY	8 cut(s)	113, 140, 181, 280, 350, 441, 511, 785
CviKI_1	RGCY	8 cut(s)	113, 140, 181, 280, 350, 441, 511, 785
CviQI	GTAC	2 cut(s)	736, 841
DdeI	CTNAG	3 cut(s)	141, 209, 516
DpnI	GATC	4 cut(s)	17, 149, 339, 621
DpnII	GATC	4 cut(s)	15, 147, 337, 619
Eam1104I	CTCTTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	554
Eco105I	TACGTA	1 cut(s)	420
Eco147I	AGGCCT	1 cut(s)	113
Eco24I	GRGCYC	2 cut(s)	142, 513
Eco57I	CTGAAG	1 cut(s)	261
Eco88I	CYCGRG	1 cut(s)	786
EcoT22I	ATGCAT	1 cut(s)	682
EcoT38I	GRGCYC	2 cut(s)	142, 513
FaeI	CATG	3 cut(s)	49, 196, 680
FalI	AAGNNNNNCTT	2 cut(s)	219, 251
FatI	CATG	3 cut(s)	45, 192, 676
Fnu4HI	GCNGC	3 cut(s)	269, 281, 760
FokI	GGATG	4 cut(s)	229, 232, 705, 812
FriOI	GRGCYC	2 cut(s)	142, 513
Fsp4HI	GCNGC	3 cut(s)	269, 281, 760
GlaI	GCGC	1 cut(s)	758
GluI	GCNGC	3 cut(s)	269, 281, 760
HaeII	RGCGCY	1 cut(s)	760
HaeIII	GGCC	1 cut(s)	113
HapII	CCGG	2 cut(s)	182, 249
HhaI	GCGC	1 cut(s)	759
Hin1II	CATG	3 cut(s)	49, 196, 680
Hin6I	GCGC	1 cut(s)	757
HinP1I	GCGC	1 cut(s)	757
HinfI	GANTC	1 cut(s)	185
HpaII	CCGG	2 cut(s)	182, 249
HphI	GGTGA	3 cut(s)	347, 385, 887
Hpy166II	GTNNAC	2 cut(s)	65, 860
Hpy188I	TCNGA	2 cut(s)	144, 288
Hpy188III	TCNNGA	9 cut(s)	46, 341, 407, 430, 482, 722, 779, 788, 797
Hpy8I	GTNNAC	2 cut(s)	65, 860
Hpy99I	CGWCG	1 cut(s)	397
HpyAV	CCTTC	5 cut(s)	82, 373, 488, 706, 901
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4IV	ACGT	3 cut(s)	308, 419, 734
HpyCH4V	TGCA	9 cut(s)	126, 222, 271, 327, 447, 461, 680, 751, 762
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 694
HpyF3I	CTNAG	3 cut(s)	141, 209, 516
HpySE526I	ACGT	3 cut(s)	308, 419, 734
Hsp92II	CATG	3 cut(s)	49, 196, 680
HspAI	GCGC	1 cut(s)	757
Kzo9I	GATC	4 cut(s)	15, 147, 337, 619
LmnI	GCTCC	1 cut(s)	673
Lsp1109I	GCAGC	3 cut(s)	255, 267, 746
LweI	GCATC	2 cut(s)	254, 400
MaeII	ACGT	3 cut(s)	308, 419, 734
MaeIII	GTNAC	2 cut(s)	295, 730
MalI	GATC	4 cut(s)	17, 149, 339, 621
MboI	GATC	4 cut(s)	15, 147, 337, 619
MboII	GAAGA	4 cut(s)	25, 243, 388, 571
MflI	RGATCY	1 cut(s)	619
MhlI	GDGCHC	2 cut(s)	142, 513
MluCI	AATT	1 cut(s)	819
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	9 cut(s)	103, 128, 164, 565, 585, 598, 687, 860, 866
Mph1103I	ATGCAT	1 cut(s)	682
MseI	TTAA	3 cut(s)	51, 435, 822
MslI	CAYNNNNRTG	1 cut(s)	723
MspI	CCGG	2 cut(s)	182, 249
Mva1269I	GAATGC	1 cut(s)	463
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	277, 694
NdeII	GATC	4 cut(s)	15, 147, 337, 619
NlaIII	CATG	3 cut(s)	49, 196, 680
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	730
NruI	TCGCGA	1 cut(s)	483
NsiI	ATGCAT	1 cut(s)	682
NspI	RCATGY	2 cut(s)	196, 680
PaeI	GCATGC	1 cut(s)	680
PaeR7I	CTCGAG	1 cut(s)	786
PagI	TCATGA	1 cut(s)	45
PceI	AGGCCT	1 cut(s)	113
PciI	ACATGT	1 cut(s)	192
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	1 cut(s)	185
PkrI	GCNGC	3 cut(s)	270, 282, 761
Ppu21I	YACGTR	1 cut(s)	420
PscI	ACATGT	1 cut(s)	192
PshBI	ATTAAT	2 cut(s)	51, 435
PsiI	TTATAA	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	405
PstI	CTGCAG	1 cut(s)	764
PsuI	RGATCY	1 cut(s)	619
RruI	TCGCGA	1 cut(s)	483
RsaI	GTAC	2 cut(s)	737, 842
RsaNI	GTAC	2 cut(s)	736, 841
RseI	CAYNNNNRTG	1 cut(s)	723
SaqAI	TTAA	3 cut(s)	51, 435, 822
SatI	GCNGC	3 cut(s)	269, 281, 760
Sau3AI	GATC	4 cut(s)	15, 147, 337, 619
SduI	GDGCHC	2 cut(s)	142, 513
SfaNI	GCATC	2 cut(s)	254, 400
SfcI	CTRYAG	1 cut(s)	760
Sfr274I	CTCGAG	1 cut(s)	786
SlaI	CTCGAG	1 cut(s)	786
SmiMI	CAYNNNNRTG	1 cut(s)	723
SmlI	CTYRAG	1 cut(s)	786
SmoI	CTYRAG	1 cut(s)	786
SnaBI	TACGTA	1 cut(s)	420
SphI	GCATGC	1 cut(s)	680
Sse9I	AATT	1 cut(s)	819
SseBI	AGGCCT	1 cut(s)	113
StuI	AGGCCT	1 cut(s)	113
TaaI	ACNGT	1 cut(s)	119
TaiI	ACGT	3 cut(s)	311, 422, 737
TaqI	TCGA	1 cut(s)	787
TasI	AATT	1 cut(s)	819
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	3 cut(s)	51, 435, 822
Tru9I	TTAA	3 cut(s)	51, 435, 822
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	1 cut(s)	730
TseI	GCWGC	3 cut(s)	268, 280, 759
Tsp45I	GTSAC	1 cut(s)	730
TspDTI	ATGAA	6 cut(s)	501, 581, 707, 725, 741, 896
TspRI	CASTG	1 cut(s)	31
VspI	ATTAAT	2 cut(s)	51, 435
XceI	RCATGY	2 cut(s)	196, 680
XhoI	CTCGAG	1 cut(s)	786
Zsp2I	ATGCAT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.