Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

79037207 .. 79041069

Gene Structure 3863 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0592300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGGGGGAGCGGAAAAGGCATAGAATTCTCATGGTTTCTGATTTTTTCTACCCCAACTTTGGTGGTGTGGAGAATCACATCTACTATCTTTCACAATGCCTTCTCAAGCTTGGTCACAAGGTGGTGGTAATGACTCATGCATACCAGAATCGTTCTGGAGTGAGATATATGACAGGCGGACTGAAAGTGTATTATGTACCATGGCGGCCGTTTCTTATGCAGAATACTTTTCCAACATTTTACGGGACACTTCCAATTGTGAGGACTATCCTTATTCGAGAGAATATATCGTTGGTACATGGGCATCAAGCCTTCTCAACTCTTTGCCACGAGGCTTTGATGCACGCACGCACAATGGGTTATAAGGTTGTGTTTACAGATCATTCACTCTATGGTTTCGCTGATGCGGGAAGCATACACATGAACAAGGTCTTGCAGTTTACTTTAGCCGAAGTGAGTCAGGCCATTTGTGTTTCTCATACAAGCAAGGAGAACACTGTGCTACGGTCAGGTTTGCCACCAGAAAAGGTGTTTGTAATACCTAATGCTGTTGACACAGCTATGTTCAAGCCTGCACCAACGCGACTGAGTCGTCATGAAATTGTTATTGTTGTTATAAGTAGGTTGGTTTACCGGAAAGGTGCAGATCTGCTTGTTGAAGTTATTCCAGAAGTTTGCCGTTTATATCCCAATGTTCGTTTCATTGTTGGAGGAGATGGACCTAAACGTGTGCGGTTGGAAGAGATGAGGGAAAAACATTCCCTACAAGATCGAGTCGAAATGTTAGGTGCTGTTCAACACTCTCAAGTACGATCTGTTCTTATTACTGGCCATATATTCTTAAACAGTTCATTAACAGAAGCTTTTTGCATAGCCATCTTAGAGGCTGCTAGTTGCGGGTTATTAACAGTCAGTACACGAGTAGGAGGTGTCCCAGAGGTTCTACCAGATGACATGGTTGTACTTGCAAAACCAGATCCTAGTGACATGGTTCAAGCAATAGAGAAGGCAATATCAATACTTCCCAACATTGACCCAGAACAAATGCACAATCGTATGAAGGAACTTTACAATTGGCATGATGTTGCAAAACGAACAGAGATTGTTTATGACCGTGCCTTGAAATGCTCAAAGCAAAATCTCTTAAAACGACTCTCACGATACCTCTCATGTGGAGCTTGGGCAGGAAAGCTTTTTTGCTTGGTTATGATCATTGATTTTATATTTTGGCATCTGTTGCAACGATGGCAGCCTGCAGAGGATATTGAAGAGGTGCCTGATTTTGTTTTATCCCATGATCAAGATGATGGCATACCACGGGACAATAAGAACCAATGCTTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

448

Amino Acids

50.99

Weight (kDa)

8.58

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_4	PF13439	20 - 187	5.6e-29	Glycosyltransferase Family 4
Glyco_trans_4_4	PF13579	21 - 182	3.3e-13	Glycosyl transferase 4-like domain
PIGA	PF08288	46 - 135	7.4e-43	PIGA (GPI anchor biosynthesis)
Glycos_transf_1	PF00534	198 - 340	1.2e-28	Glycosyl transferases group 1
Glyco_trans_1_4	PF13692	202 - 338	7.9e-26	Glycosyl transferases group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	363, 617
AasI	GACNNNNNNGTC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	1273
AccBSI	CCGCTC	1 cut(s)	10
AccII	CGCG	1 cut(s)	583
AciI	CCGC	6 cut(s)	10, 177, 205, 407, 733, 897
AclWI	GGATC	1 cut(s)	971
AcoI	YGGCCR	2 cut(s)	206, 829
AcsI	RAATTY	1 cut(s)	24
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	5 cut(s)	198, 297, 810, 916, 963
AfiI	CCNNNNNNNGG	1 cut(s)	59
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	6 cut(s)	568, 659, 797, 995, 1123, 1268
AjuI	GAANNNNNNNTTGG	4 cut(s)	275, 307, 683, 715
AluBI	AGCT	5 cut(s)	109, 560, 863, 1178, 1192
AluI	AGCT	5 cut(s)	109, 560, 863, 1178, 1192
AlwI	GGATC	1 cut(s)	971
AoxI	GGCC	3 cut(s)	206, 462, 829
ApeKI	GCWGC	2 cut(s)	887, 1249
ApoI	RAATTY	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	663
AspS9I	GGNCC	1 cut(s)	719
AvaII	GGWCC	1 cut(s)	719
BalI	TGGCCA	1 cut(s)	831
BanI	GGYRCC	1 cut(s)	1273
BarI	GAAGNNNNNNTAC	2 cut(s)	1052, 1084
BauI	CACGAG	2 cut(s)	329, 918
BbvI	GCAGC	2 cut(s)	874, 1261
BccI	CCATC	4 cut(s)	710, 884, 1239, 1301
BceAI	ACGGC	2 cut(s)	193, 663
BclI	TGATCA	2 cut(s)	1209, 1297
BfaI	CTAG	2 cut(s)	891, 981
BfmI	CTRYAG	1 cut(s)	1254
BglII	AGATCT	1 cut(s)	646
BisI	GCNGC	3 cut(s)	206, 888, 1250
BlsI	GCNGC	3 cut(s)	207, 889, 1251
Bme18I	GGWCC	1 cut(s)	719
BmgT120I	GGNCC	1 cut(s)	719
BmiI	GGNNCC	1 cut(s)	1275
BmsI	GCATC	4 cut(s)	313, 330, 394, 1240
BpmI	CTGGAG	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	89, 789
BsaJI	CCNNGG	2 cut(s)	200, 1316
BsaWI	WCCGGW	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	1 cut(s)	832
BseDI	CCNNGG	2 cut(s)	200, 1316
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	1 cut(s)	832
BseRI	GAGGAG	1 cut(s)	726
BseX3I	CGGCCG	1 cut(s)	206
BseXI	GCAGC	2 cut(s)	874, 1261
BsgI	GTGCAG	2 cut(s)	558, 663
Bsh1236I	CGCG	1 cut(s)	583
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	3 cut(s)	208, 464, 831
BshNI	GGYRCC	1 cut(s)	1273
BsiEI	CGRYCG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	634
BslFI	GGGAC	3 cut(s)	259, 917, 1334
BslI	CCNNNNNNNGG	1 cut(s)	59
BsmFI	GGGAC	3 cut(s)	259, 917, 1334
BsnI	GGCC	3 cut(s)	208, 464, 831
Bsp143I	GATC	7 cut(s)	379, 646, 769, 812, 976, 1209, 1297
Bsp19I	CCATGG	1 cut(s)	200
BspACI	CCGC	6 cut(s)	10, 177, 205, 407, 733, 897
BspANI	GGCC	3 cut(s)	208, 464, 831
BspCNI	CTCAG	1 cut(s)	579
BspFNI	CGCG	1 cut(s)	583
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	1 cut(s)	1275
BspMAI	CTGCAG	1 cut(s)	1258
BspPI	GGATC	1 cut(s)	971
BspT107I	GGYRCC	1 cut(s)	1273
BsrBI	CCGCTC	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	832
BssECI	CCNNGG	2 cut(s)	200, 1316
BssMI	GATC	7 cut(s)	379, 646, 769, 812, 976, 1209, 1297
BssSI	CACGAG	2 cut(s)	329, 918
BssT1I	CCWWGG	1 cut(s)	200
Bst2BI	CACGAG	2 cut(s)	329, 918
Bst4CI	ACNGT	5 cut(s)	499, 507, 848, 910, 1115
Bst6I	CTCTTC	2 cut(s)	735, 1263
BstAPI	GCANNNNNTGC	1 cut(s)	1237
BstC8I	GCNNGC	4 cut(s)	345, 349, 573, 1254
BstDEI	CTNAG	2 cut(s)	587, 880
BstDSI	CCRYGG	2 cut(s)	200, 1316
BstFNI	CGCG	1 cut(s)	583
BstKTI	GATC	7 cut(s)	382, 649, 772, 815, 979, 1212, 1300
BstMBI	GATC	7 cut(s)	379, 646, 769, 812, 976, 1209, 1297
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 1237, 1246
BstSFI	CTRYAG	1 cut(s)	1254
BstUI	CGCG	1 cut(s)	583
BstV1I	GCAGC	2 cut(s)	874, 1261
BstX2I	RGATCY	2 cut(s)	646, 976
BstXI	CCANNNNNNTGG	1 cut(s)	1340
BstYI	RGATCY	2 cut(s)	646, 976
BstZI	CGGCCG	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	208, 464, 831
BtgI	CCRYGG	2 cut(s)	200, 1316
BtsIMutI	CAGTG	1 cut(s)	495
Cac8I	GCNNGC	4 cut(s)	345, 349, 573, 1254
CciI	TCATGA	1 cut(s)	595
Cfr13I	GGNCC	1 cut(s)	719
Csp6I	GTAC	5 cut(s)	197, 296, 809, 915, 962
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviQI	GTAC	5 cut(s)	197, 296, 809, 915, 962
DdeI	CTNAG	2 cut(s)	587, 880
DpnI	GATC	7 cut(s)	381, 648, 771, 814, 978, 1211, 1299
DpnII	GATC	7 cut(s)	379, 646, 769, 812, 976, 1209, 1297
DraIII	CACNNNGTG	1 cut(s)	121
DrdI	GACNNNNNNGTC	1 cut(s)	591
DseDI	GACNNNNNNGTC	1 cut(s)	591
EaeI	YGGCCR	2 cut(s)	206, 829
EagI	CGGCCG	1 cut(s)	206
Eam1104I	CTCTTC	2 cut(s)	735, 1263
EarI	CTCTTC	2 cut(s)	735, 1263
EciI	GGCGGA	1 cut(s)	192
EclXI	CGGCCG	1 cut(s)	206
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	719
Eco52I	CGGCCG	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	142
ErhI	CCWWGG	1 cut(s)	200
FaqI	GGGAC	3 cut(s)	259, 917, 1334
FauI	CCCGC	2 cut(s)	400, 890
FbaI	TGATCA	2 cut(s)	1209, 1297
Fnu4HI	GCNGC	3 cut(s)	206, 888, 1250
Fsp4HI	GCNGC	3 cut(s)	206, 888, 1250
FspBI	CTAG	2 cut(s)	891, 981
GluI	GCNGC	3 cut(s)	206, 888, 1250
GsuI	CTGGAG	1 cut(s)	177
HaeIII	GGCC	3 cut(s)	208, 464, 831
HapII	CCGG	1 cut(s)	634
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	3 cut(s)	107, 861, 1190
HinfI	GANTC	7 cut(s)	73, 133, 148, 457, 589, 774, 1152
HpaII	CCGG	1 cut(s)	634
Hpy166II	GTNNAC	5 cut(s)	375, 441, 553, 631, 917
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	6 cut(s)	156, 278, 596, 668, 1158, 1301
Hpy8I	GTNNAC	5 cut(s)	375, 441, 553, 631, 917
HpyAV	CCTTC	4 cut(s)	110, 322, 1000, 1054
HpyCH4III	ACNGT	5 cut(s)	499, 507, 848, 910, 1115
HpyCH4IV	ACGT	1 cut(s)	727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 1237, 1246
HpyF3I	CTNAG	2 cut(s)	587, 880
HpySE526I	ACGT	1 cut(s)	727
Ksp22I	TGATCA	2 cut(s)	1209, 1297
Kzo9I	GATC	7 cut(s)	379, 646, 769, 812, 976, 1209, 1297
LmnI	GCTCC	2 cut(s)	7, 1175
Lsp1109I	GCAGC	2 cut(s)	874, 1261
LweI	GCATC	4 cut(s)	313, 330, 394, 1240
MaeI	CTAG	2 cut(s)	891, 981
MaeII	ACGT	1 cut(s)	727
MaeIII	GTNAC	2 cut(s)	113, 983
MalI	GATC	7 cut(s)	381, 648, 771, 814, 978, 1211, 1299
MbiI	CCGCTC	1 cut(s)	10
MboI	GATC	7 cut(s)	379, 646, 769, 812, 976, 1209, 1297
MboII	GAAGA	2 cut(s)	752, 1280
MfeI	CAATTG	2 cut(s)	255, 1072
MflI	RGATCY	2 cut(s)	646, 976
MlsI	TGGCCA	1 cut(s)	831
MluCI	AATT	4 cut(s)	24, 255, 600, 1072
MluNI	TGGCCA	1 cut(s)	831
MlyI	GAGTC	5 cut(s)	127, 466, 598, 783, 1146
MmeI	TCCRAC	3 cut(s)	257, 688, 717
Mox20I	TGGCCA	1 cut(s)	831
Mph1103I	ATGCAT	1 cut(s)	142
MroXI	GAANNNNTTC	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	831
MseI	TTAA	4 cut(s)	842, 854, 905, 1145
MslI	CAYNNNNRTG	2 cut(s)	419, 560
Msp20I	TGGCCA	1 cut(s)	831
MspI	CCGG	1 cut(s)	634
MunI	CAATTG	2 cut(s)	255, 1072
MvnI	CGCG	1 cut(s)	583
MwoI	GCNNNNNNNGC	3 cut(s)	16, 1237, 1246
NcoI	CCATGG	1 cut(s)	200
NdeII	GATC	7 cut(s)	379, 646, 769, 812, 976, 1209, 1297
NlaIV	GGNNCC	1 cut(s)	1275
NmuCI	GTSAC	2 cut(s)	113, 983
NsiI	ATGCAT	1 cut(s)	142
PagI	TCATGA	1 cut(s)	595
PcsI	WCGNNNNNNNCGW	1 cut(s)	1156
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	2 cut(s)	73, 148
PflFI	GACNNNGTC	1 cut(s)	588
PkrI	GCNGC	3 cut(s)	207, 889, 1251
PleI	GAGTC	5 cut(s)	127, 465, 597, 782, 1146
PpsI	GAGTC	5 cut(s)	127, 465, 597, 782, 1146
PsiI	TTATAA	2 cut(s)	363, 617
PspN4I	GGNNCC	1 cut(s)	1275
PspPI	GGNCC	1 cut(s)	719
PsrI	GAACNNNNNNTAC	2 cut(s)	801, 833
PstI	CTGCAG	1 cut(s)	1258
PsuI	RGATCY	2 cut(s)	646, 976
PsyI	GACNNNGTC	1 cut(s)	588
RsaI	GTAC	5 cut(s)	198, 297, 810, 916, 963
RsaNI	GTAC	5 cut(s)	197, 296, 809, 915, 962
RseI	CAYNNNNRTG	2 cut(s)	419, 560
SaqAI	TTAA	4 cut(s)	842, 854, 905, 1145
SatI	GCNGC	3 cut(s)	206, 888, 1250
Sau3AI	GATC	7 cut(s)	379, 646, 769, 812, 976, 1209, 1297
Sau96I	GGNCC	1 cut(s)	719
SchI	GAGTC	5 cut(s)	127, 466, 598, 783, 1146
SfaNI	GCATC	4 cut(s)	313, 330, 394, 1240
SfcI	CTRYAG	1 cut(s)	1254
SinI	GGWCC	1 cut(s)	719
SmiMI	CAYNNNNRTG	2 cut(s)	419, 560
SmlI	CTYRAG	2 cut(s)	104, 804
SmoI	CTYRAG	2 cut(s)	104, 804
Sse9I	AATT	4 cut(s)	24, 255, 600, 1072
SsiI	CCGC	6 cut(s)	10, 177, 205, 407, 733, 897
SspMI	CTAG	2 cut(s)	891, 981
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	5 cut(s)	499, 507, 848, 910, 1115
TaiI	ACGT	1 cut(s)	730
TaqI	TCGA	3 cut(s)	277, 772, 777
TasI	AATT	4 cut(s)	24, 255, 600, 1072
TatI	WGTACW	2 cut(s)	914, 961
TauI	GCSGC	1 cut(s)	208
TfiI	GAWTC	2 cut(s)	73, 148
Tru1I	TTAA	4 cut(s)	842, 854, 905, 1145
Tru9I	TTAA	4 cut(s)	842, 854, 905, 1145
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	2 cut(s)	113, 983
TseI	GCWGC	2 cut(s)	887, 1249
Tsp45I	GTSAC	2 cut(s)	113, 983
TspDTI	ATGAA	5 cut(s)	437, 612, 691, 840, 1073
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	588
VpaK11BI	GGWCC	1 cut(s)	719
XapI	RAATTY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	152
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	2 cut(s)	891, 981
Zsp2I	ATGCAT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.