Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

15382927 .. 15384029

Gene Structure 1103 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23352

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGACGAGTGGAAATGTTATGCCTAAGACTAAGACTTGTAATGAATTGTTGAGTTTGTTTTCGAAATTGAATCGAACCGAGAGGGCTTGGGTTTTGTATGCTGACATGTTTAGGTTGAAGATCAAGTCCAGTGTGAAGGAGTTTCTTGGGTTTATGGAGATTTTGGGGATTAAGCCTACTGTTGTTACTTATAGTACAATCATTCATGGGTTTTGTTTGAGAGGCCGAGTTGGAGGGGCACATATGATCTTTAGTGCTATGAAAGGTAGAGCAGTTCAGCCCGATTCTTACACGGCTTTTGGTTATAGTGATGAGATGGTGAAGAAGGGTATAATGCCGACGGTGTCAAGTTACAATTTGTTGATTCATGAATTGTTTATGGAAGCTAGGGCGAGTGAGGCTGATTGTATGGTTAGAGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGCTATTGCAGGTCTGGGAATGCAAAGAAAGCTTTTATCCTTTGCGATGAAGTGCTGAGGAAAGGGATAGAGCCCACTAAGGAAACTTATACATCACTTATTTATGTTTTGAGTAAGAGGAAGGGAATGAACGAGGCAGATGACTTGCTTGAGAAGATACTGCGTAAGGGTGTTCTGGCAGATCTTGTGATGCTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCGTGCATTTTCGCTTTTGAGGGAGATGGATAAAATGAAGGTTCATCCAGATGAAGTGACTTACAATACCCTAATGCAAGGGCGTTGCAGGGCAGGGAAAGTTGAGGAAGCTCGAGAACTCCTGGATGAGATGAAGAGAAGGGGAATTAAGCCAGATTACATTAGTTACAACACCCTCATTAGTGGACATAATAAACGAGGTGATATGAATGATGCCTTCAAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

312

Amino Acids

35.31

Weight (kDa)

8.91

Isoelectric Point (pI)

25.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	56 - 88	1.8e-10	PPR repeat
PPR_2	PF13041	59 - 98	2.8e-10	PPR repeat family
PPR_long	PF17177	99 - 198	9.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	113 - 162	8.7e-14	PPR repeat family
PPR_3	PF13812	138 - 197	6.3e-10	Pentatricopeptide repeat domain
TPR_24	PF23276	141 - 245	3.3e-11	Fungal tetratrico peptide repeats
PPR_1	PF12854	144 - 175	5.8e-12	PPR repeat
PPR_2	PF13041	149 - 196	1.1e-13	PPR repeat family
PPR	PF01535	151 - 181	9.6e-08	PPR repeat
PPR_long	PF17177	199 - 308	1.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	207 - 263	1.2e-08	Pentatricopeptide repeat domain
TPR_24	PF23276	214 - 311	3.5e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	214 - 246	7.7e-09	PPR repeat
PPR_2	PF13041	219 - 267	6.9e-16	PPR repeat family
PPR	PF01535	221 - 250	7e-07	PPR repeat
PPR_1	PF12854	251 - 282	2.7e-13	PPR repeat
PPR_2	PF13041	253 - 300	6.3e-19	PPR repeat family
PPR	PF01535	256 - 286	1.8e-09	PPR repeat
PPR_1	PF12854	284 - 312	3.6e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	474
AfaI	GTAC	1 cut(s)	196
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	70, 118, 931
AjnI	CCWGG	1 cut(s)	831
AluBI	AGCT	3 cut(s)	386, 506, 821
AluI	AGCT	3 cut(s)	386, 506, 821
Ama87I	CYCGRG	1 cut(s)	822
AoxI	GGCC	1 cut(s)	223
AseI	ATTAAT	1 cut(s)	471
AsuHPI	GGTGA	2 cut(s)	331, 923
AsuII	TTCGAA	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	822
BaeGI	GKGCMC	1 cut(s)	241
BanII	GRGCYC	1 cut(s)	549
BbvCI	CCTCAGC	1 cut(s)	530
BccI	CCATC	3 cut(s)	310, 677, 730
BceAI	ACGGC	1 cut(s)	309
BciT130I	CCWGG	1 cut(s)	833
BfaI	CTAG	1 cut(s)	387
BfuAI	ACCTGC	1 cut(s)	474
BglII	AGATCT	1 cut(s)	655
Bme1390I	CCNGG	1 cut(s)	833
BmeT110I	CYCGRG	1 cut(s)	822
BmiI	GGNNCC	1 cut(s)	441
BmrFI	CCNGG	1 cut(s)	833
BmsI	GCATC	3 cut(s)	436, 654, 913
Bpu10I	CCTNAGC	1 cut(s)	530
Bpu14I	TTCGAA	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	644
BsaAI	YACGTR	1 cut(s)	456
Bse1I	ACTGG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	833
BseGI	GGATG	2 cut(s)	754, 841
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	129
BseSI	GKGCMC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	822
BsmI	GAATGC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	225
BsoBI	CYCGRG	1 cut(s)	822
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	241, 549
Bsp143I	GATC	3 cut(s)	120, 246, 655
BspANI	GGCC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	522
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	441
BspMI	ACCTGC	1 cut(s)	474
BspT104I	TTCGAA	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	129
BssMI	GATC	3 cut(s)	120, 246, 655
Bst2UI	CCWGG	1 cut(s)	833
Bst4CI	ACNGT	2 cut(s)	181, 343
Bst6I	CTCTTC	2 cut(s)	420, 839
BstBAI	YACGTR	1 cut(s)	456
BstBI	TTCGAA	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	4 cut(s)	24, 30, 530, 552
BstF5I	GGATG	2 cut(s)	754, 841
BstKTI	GATC	3 cut(s)	123, 249, 658
BstMBI	GATC	3 cut(s)	120, 246, 655
BstMWI	GCNNNNNNNGC	2 cut(s)	398, 503
BstNI	CCWGG	1 cut(s)	833
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	1 cut(s)	831
BstSLI	GKGCMC	1 cut(s)	241
BstSNI	TACGTA	1 cut(s)	456
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	1 cut(s)	225
BtgZI	GCGATG	1 cut(s)	534
BtsCI	GGATG	2 cut(s)	754, 841
BtsIMutI	CAGTG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	714
CciI	TCATGA	1 cut(s)	367
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	3 cut(s)	106, 206, 368
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	4 cut(s)	24, 30, 530, 552
DpnI	GATC	3 cut(s)	122, 248, 657
DpnII	GATC	3 cut(s)	120, 246, 655
Eam1104I	CTCTTC	2 cut(s)	420, 839
EarI	CTCTTC	2 cut(s)	420, 839
Eco105I	TACGTA	1 cut(s)	456
Eco24I	GRGCYC	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	822
EcoRII	CCWGG	1 cut(s)	831
EcoT38I	GRGCYC	1 cut(s)	549
FaeI	CATG	3 cut(s)	109, 209, 371
FatI	CATG	3 cut(s)	105, 205, 367
FauNDI	CATATG	1 cut(s)	243
FokI	GGATG	2 cut(s)	741, 848
FriOI	GRGCYC	1 cut(s)	549
FspBI	CTAG	1 cut(s)	387
HaeIII	GGCC	1 cut(s)	225
Hin1II	CATG	3 cut(s)	109, 209, 371
HindIII	AAGCTT	1 cut(s)	504
HinfI	GANTC	3 cut(s)	70, 284, 364
HphI	GGTGA	2 cut(s)	331, 923
Hpy166II	GTNNAC	1 cut(s)	896
Hpy188III	TCNNGA	5 cut(s)	368, 443, 466, 758, 824
Hpy8I	GTNNAC	1 cut(s)	896
Hpy99I	CGWCG	1 cut(s)	343
HpyAV	CCTTC	7 cut(s)	130, 319, 424, 589, 742, 843, 937
HpyCH4III	ACNGT	2 cut(s)	181, 343
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	5 cut(s)	483, 497, 716, 787, 798
HpyF10VI	GCNNNNNNNGC	2 cut(s)	398, 503
HpyF3I	CTNAG	4 cut(s)	24, 30, 530, 552
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	3 cut(s)	109, 209, 371
Kzo9I	GATC	3 cut(s)	120, 246, 655
LmnI	GCTCC	1 cut(s)	709
LweI	GCATC	3 cut(s)	436, 654, 913
MaeI	CTAG	1 cut(s)	387
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	4 cut(s)	184, 350, 766, 875
MalI	GATC	3 cut(s)	122, 248, 657
MboI	GATC	3 cut(s)	120, 246, 655
MboII	GAAGA	5 cut(s)	130, 334, 437, 640, 856
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	2 cut(s)	241, 549
MluCI	AATT	5 cut(s)	44, 65, 355, 371, 855
MmeI	TCCRAC	1 cut(s)	211
MseI	TTAA	3 cut(s)	171, 471, 858
MslI	CAYNNNNRTG	1 cut(s)	759
MspR9I	CCNGG	1 cut(s)	833
Mva1269I	GAATGC	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	833
MwoI	GCNNNNNNNGC	2 cut(s)	398, 503
NdeI	CATATG	1 cut(s)	243
NdeII	GATC	3 cut(s)	120, 246, 655
NlaIII	CATG	3 cut(s)	109, 209, 371
NlaIV	GGNNCC	1 cut(s)	441
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	766
NspI	RCATGY	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	62
PaeR7I	CTCGAG	1 cut(s)	822
PagI	TCATGA	1 cut(s)	367
PciI	ACATGT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	499
PfeI	GAWTC	3 cut(s)	70, 284, 364
PflFI	GACNNNGTC	1 cut(s)	343
PfoI	TCCNGGA	1 cut(s)	831
Ppu21I	YACGTR	1 cut(s)	456
PscI	ACATGT	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	471
Psp6I	CCWGG	1 cut(s)	831
PspGI	CCWGG	1 cut(s)	831
PspN4I	GGNNCC	1 cut(s)	441
PsuI	RGATCY	1 cut(s)	655
PsyI	GACNNNGTC	1 cut(s)	343
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	759
SaqAI	TTAA	3 cut(s)	171, 471, 858
Sau3AI	GATC	3 cut(s)	120, 246, 655
ScrFI	CCNGG	1 cut(s)	833
SduI	GDGCHC	2 cut(s)	241, 549
SetI	ASST	9 cut(s)	116, 268, 388, 458, 488, 508, 753, 823, 913
SfaNI	GCATC	3 cut(s)	436, 654, 913
Sfr274I	CTCGAG	1 cut(s)	822
SfuI	TTCGAA	1 cut(s)	62
SlaI	CTCGAG	1 cut(s)	822
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	2 cut(s)	623, 822
SmoI	CTYRAG	2 cut(s)	623, 822
SnaBI	TACGTA	1 cut(s)	456
Sse9I	AATT	5 cut(s)	44, 65, 355, 371, 855
SspMI	CTAG	1 cut(s)	387
StyD4I	CCNGG	1 cut(s)	831
TaaI	ACNGT	2 cut(s)	181, 343
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	3 cut(s)	62, 73, 823
TasI	AATT	5 cut(s)	44, 65, 355, 371, 855
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	70, 284, 364
Tru1I	TTAA	3 cut(s)	171, 471, 858
Tru9I	TTAA	3 cut(s)	171, 471, 858
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	766
Tsp45I	GTSAC	1 cut(s)	766
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	471
XceI	RCATGY	1 cut(s)	109
XhoI	CTCGAG	1 cut(s)	822
XspI	CTAG	1 cut(s)	387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.