Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000588.1

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

234383 .. 235811

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000588.1_g000057.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ctgggatccattttcctcccaacccaatctctctgttccctcacccaaccagaccctcctccacccatcatccaccactttctcctcaactcaatccaaacttgtcagtggcatttcatcgaacaccttccgctcaaccttccctcctctctaatctcccaaaccctcttccatctccaccaaacccctcacctcgtccatcaattcacatcccacatcgactttccccgcctcgaaatccaaacccaatgcctcgccgtcgccattctcgccgccctcccttccccaaaaccctccctggagctcctgaagcaactcctcggcagcggcattgctccagttcgggacgttttcgactcgctggctcgtgctagtgcgcttgactgcccaaagcggcgtcgttttggaaatgttatgcctaggactaagacttgtaatgaattgttgagtttgttttcgaaattgaatcgaaccgagagggcttgggttttgtatgctgacatgtttaggttgaagatcaagtccaatgtttgtacttttaacatcatgattaatgtgttgtgcaaagaaggcaagttgaacaaggcgaaggagtttcttgggtttatggaggttttggggattaagcctactgttgttacttataatactatcattcatgggttttgtttgagaggcagagttggaggggctcagatgatttttcgtgctgtgaaagggagaggagttctgccagattcttacacgtatggattgcttattagtgggatgtgtctgggtgatctggacagggctttttgttatagagatgagatggtgaagaaggtgctgagtaaagggatagagcccactaaggaaacttatacatcacttatttatgttttgagtaagaggaagggaatgaacgaggcagatgacttgcttgagaagatactgcgtaagggtgttctgccagatcttgtgatgctcaatgccttgattgatggtcattgtgctaatgggaatatggagcgtgcattttcgcttttgagggagatggataaaatgaaggttcatccggatgaagtgacttacaataccctaatgcaagggcgttgcagggcagggaaagttgaggaagctcgagaactcctggatgagatgaagagaaggggaaataagcctgattacattagttacaacaccctcattagtggacataataaacgaggtgatatgaatgatgccttcaaagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

412

Amino Acids

46.56

Weight (kDa)

9.22

Isoelectric Point (pI)

33.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	645
AccBSI	CCGCTC	1 cut(s)	133
AccIII	TCCGGA	1 cut(s)	1057
AciI	CCGC	5 cut(s)	131, 229, 273, 327, 394
AclWI	GGATC	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	329
AcyI	GRCGYC	1 cut(s)	397
AfaI	GTAC	1 cut(s)	535
AflIII	ACRYGT	2 cut(s)	501, 744
AgsI	TTSAA	4 cut(s)	466, 514, 580, 1231
AjnI	CCWGG	2 cut(s)	297, 1131
AluBI	AGCT	2 cut(s)	304, 1121
AluI	AGCT	2 cut(s)	304, 1121
Alw21I	GWGCWC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	1122
Aor13HI	TCCGGA	1 cut(s)	1057
ApeKI	GCWGC	1 cut(s)	324
AseI	ATTAAT	1 cut(s)	552
Asp700I	GAANNNNTTC	1 cut(s)	126
AspA2I	CCTAGG	1 cut(s)	419
AspLEI	GCGC	1 cut(s)	379
AsuHPI	GGTGA	5 cut(s)	34, 182, 791, 829, 1223
AsuII	TTCGAA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	1122
AvrII	CCTAGG	1 cut(s)	419
BamHI	GGATCC	1 cut(s)	5
BanII	GRGCYC	3 cut(s)	306, 694, 849
BauI	CACGAG	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	336
BccI	CCATC	6 cut(s)	74, 180, 207, 808, 977, 1030
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	2 cut(s)	299, 1133
BfaI	CTAG	2 cut(s)	372, 420
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	4 cut(s)	273, 325, 328, 395
BlnI	CCTAGG	1 cut(s)	419
BlsI	GCNGC	4 cut(s)	274, 326, 329, 396
Bme1390I	CCNGG	2 cut(s)	299, 1133
BmeT110I	CYCGRG	1 cut(s)	1122
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	299, 1133
BmsI	GCATC	2 cut(s)	954, 1213
BpmI	CTGGAG	2 cut(s)	320, 321
Bpu14I	TTCGAA	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	944
BsaAI	YACGTR	1 cut(s)	747
BsaHI	GRCGYC	1 cut(s)	397
BsaJI	CCNNGG	3 cut(s)	297, 319, 419
BsaWI	WCCGGW	1 cut(s)	1057
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bse1I	ACTGG	1 cut(s)	338
Bse3DI	GCAATG	1 cut(s)	330
BseAI	TCCGGA	1 cut(s)	1057
BseBI	CCWGG	2 cut(s)	299, 1133
BseDI	CCNNGG	3 cut(s)	297, 319, 419
BseGI	GGATG	6 cut(s)	69, 209, 774, 1054, 1066, 1141
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	707, 821
BseNI	ACTGG	1 cut(s)	338
BseRI	GAGGAG	5 cut(s)	48, 74, 136, 308, 738
BseXI	GCAGC	1 cut(s)	336
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	1122
BsiSI	CCGG	1 cut(s)	1058
BslFI	GGGAC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	359
BsoBI	CYCGRG	1 cut(s)	1122
Bsp119I	TTCGAA	1 cut(s)	458
Bsp1286I	GDGCHC	3 cut(s)	306, 694, 849
Bsp13I	TCCGGA	1 cut(s)	1057
Bsp143I	GATC	4 cut(s)	5, 516, 781, 955
BspACI	CCGC	5 cut(s)	131, 229, 273, 327, 394
BspCNI	CTCAG	2 cut(s)	706, 822
BspEI	TCCGGA	1 cut(s)	1057
BspHI	TCATGA	1 cut(s)	546
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	13
BspT104I	TTCGAA	1 cut(s)	458
BsrBI	CCGCTC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	330
BsrI	ACTGG	1 cut(s)	338
BssECI	CCNNGG	3 cut(s)	297, 319, 419
BssMI	GATC	4 cut(s)	5, 516, 781, 955
BssNI	GRCGYC	1 cut(s)	397
BssSI	CACGAG	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	299, 1133
Bst4CI	ACNGT	1 cut(s)	634
Bst6I	CTCTTC	2 cut(s)	173, 1139
BstACI	GRCGYC	1 cut(s)	397
BstBAI	YACGTR	1 cut(s)	747
BstBI	TTCGAA	1 cut(s)	458
BstC8I	GCNNGC	2 cut(s)	363, 1014
BstDEI	CTNAG	4 cut(s)	426, 693, 830, 852
BstF5I	GGATG	6 cut(s)	69, 209, 774, 1054, 1066, 1141
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	4 cut(s)	8, 519, 784, 958
BstMBI	GATC	4 cut(s)	5, 516, 781, 955
BstMWI	GCNNNNNNNGC	3 cut(s)	269, 310, 570
BstNI	CCWGG	2 cut(s)	299, 1133
BstNSI	RCATGY	1 cut(s)	505
BstSCI	CCNGG	2 cut(s)	297, 1131
BstV1I	GCAGC	1 cut(s)	336
BstX2I	RGATCY	2 cut(s)	5, 955
BstYI	RGATCY	2 cut(s)	5, 955
BtsCI	GGATG	6 cut(s)	69, 209, 774, 1054, 1066, 1141
BtsIMutI	CAGTG	1 cut(s)	113
Cac8I	GCNNGC	2 cut(s)	363, 1014
CciI	TCATGA	1 cut(s)	546
CfoI	GCGC	1 cut(s)	379
CseI	GACGC	1 cut(s)	386
Csp6I	GTAC	1 cut(s)	534
CviAII	CATG	3 cut(s)	502, 547, 659
CviJI	RGCY	9 cut(s)	304, 365, 482, 628, 692, 794, 847, 1121, 1162
CviKI_1	RGCY	9 cut(s)	304, 365, 482, 628, 692, 794, 847, 1121, 1162
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	4 cut(s)	426, 693, 830, 852
DpnI	GATC	4 cut(s)	7, 518, 783, 957
DpnII	GATC	4 cut(s)	5, 516, 781, 955
Eam1104I	CTCTTC	2 cut(s)	173, 1139
EarI	CTCTTC	2 cut(s)	173, 1139
Ecl136II	GAGCTC	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	419
Eco24I	GRGCYC	3 cut(s)	306, 694, 849
Eco53kI	GAGCTC	1 cut(s)	304
Eco57I	CTGAAG	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	1122
EcoICRI	GAGCTC	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	297, 1131
EcoT14I	CCWWGG	1 cut(s)	419
EcoT38I	GRGCYC	3 cut(s)	306, 694, 849
ErhI	CCWWGG	1 cut(s)	419
FaeI	CATG	3 cut(s)	505, 550, 662
FaqI	GGGAC	1 cut(s)	359
FatI	CATG	3 cut(s)	501, 546, 658
FauI	CCCGC	1 cut(s)	236
Fnu4HI	GCNGC	4 cut(s)	273, 325, 328, 395
FokI	GGATG	6 cut(s)	56, 196, 781, 1041, 1073, 1148
FriOI	GRGCYC	3 cut(s)	306, 694, 849
Fsp4HI	GCNGC	4 cut(s)	273, 325, 328, 395
FspBI	CTAG	2 cut(s)	372, 420
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	4 cut(s)	273, 325, 328, 395
GsuI	CTGGAG	2 cut(s)	320, 321
HapII	CCGG	1 cut(s)	1058
HgaI	GACGC	1 cut(s)	386
HhaI	GCGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	397
Hin1II	CATG	3 cut(s)	505, 550, 662
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	3 cut(s)	356, 466, 737
HpaII	CCGG	1 cut(s)	1058
HphI	GGTGA	5 cut(s)	34, 182, 791, 829, 1223
Hpy166II	GTNNAC	1 cut(s)	1196
Hpy188I	TCNGA	1 cut(s)	696
Hpy188III	TCNNGA	6 cut(s)	307, 344, 547, 785, 1058, 1124
Hpy8I	GTNNAC	1 cut(s)	1196
Hpy99I	CGWCG	2 cut(s)	263, 402
HpyCH4III	ACNGT	1 cut(s)	634
HpyCH4IV	ACGT	2 cut(s)	348, 746
HpyCH4V	TGCA	4 cut(s)	564, 1016, 1087, 1098
HpyF10VI	GCNNNNNNNGC	3 cut(s)	269, 310, 570
HpyF3I	CTNAG	4 cut(s)	426, 693, 830, 852
HpySE526I	ACGT	2 cut(s)	348, 746
Hsp92I	GRCGYC	1 cut(s)	397
Hsp92II	CATG	3 cut(s)	505, 550, 662
HspAI	GCGC	1 cut(s)	377
Kpn2I	TCCGGA	1 cut(s)	1057
Kzo9I	GATC	4 cut(s)	5, 516, 781, 955
LmnI	GCTCC	4 cut(s)	301, 309, 340, 1009
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	2 cut(s)	954, 1213
MaeI	CTAG	2 cut(s)	372, 420
MaeII	ACGT	2 cut(s)	348, 746
MaeIII	GTNAC	3 cut(s)	637, 1066, 1175
MalI	GATC	4 cut(s)	7, 518, 783, 957
MbiI	CCGCTC	1 cut(s)	133
MboI	GATC	4 cut(s)	5, 516, 781, 955
MboII	GAAGA	5 cut(s)	160, 526, 832, 940, 1156
MflI	RGATCY	2 cut(s)	5, 955
MhlI	GDGCHC	3 cut(s)	306, 694, 849
MluCI	AATT	3 cut(s)	203, 440, 461
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	1 cut(s)	664
MroI	TCCGGA	1 cut(s)	1057
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	3 cut(s)	540, 552, 624
MslI	CAYNNNNRTG	1 cut(s)	1059
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	1 cut(s)	1058
MspR9I	CCNGG	2 cut(s)	299, 1133
MvaI	CCWGG	2 cut(s)	299, 1133
MwoI	GCNNNNNNNGC	3 cut(s)	269, 310, 570
NdeII	GATC	4 cut(s)	5, 516, 781, 955
NlaIII	CATG	3 cut(s)	505, 550, 662
NlaIV	GGNNCC	1 cut(s)	7
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	1066
NspI	RCATGY	1 cut(s)	505
NspV	TTCGAA	1 cut(s)	458
PaeR7I	CTCGAG	1 cut(s)	1122
PagI	TCATGA	1 cut(s)	546
PciI	ACATGT	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	466, 737
PfoI	TCCNGGA	1 cut(s)	1131
PkrI	GCNGC	4 cut(s)	274, 326, 329, 396
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
Ppu21I	YACGTR	1 cut(s)	747
PscI	ACATGT	1 cut(s)	501
PshBI	ATTAAT	1 cut(s)	552
PsiI	TTATAA	1 cut(s)	645
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	2 cut(s)	297, 1131
PspGI	CCWGG	2 cut(s)	297, 1131
PspN4I	GGNNCC	1 cut(s)	7
PsuI	RGATCY	2 cut(s)	5, 955
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
RseI	CAYNNNNRTG	1 cut(s)	1059
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	3 cut(s)	540, 552, 624
SatI	GCNGC	4 cut(s)	273, 325, 328, 395
Sau3AI	GATC	4 cut(s)	5, 516, 781, 955
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	2 cut(s)	299, 1133
SduI	GDGCHC	3 cut(s)	306, 694, 849
SfaNI	GCATC	2 cut(s)	954, 1213
Sfr274I	CTCGAG	1 cut(s)	1122
SfuI	TTCGAA	1 cut(s)	458
SlaI	CTCGAG	1 cut(s)	1122
SmiMI	CAYNNNNRTG	1 cut(s)	1059
SmlI	CTYRAG	2 cut(s)	923, 1122
SmoI	CTYRAG	2 cut(s)	923, 1122
Sse9I	AATT	3 cut(s)	203, 440, 461
SsiI	CCGC	5 cut(s)	131, 229, 273, 327, 394
SspMI	CTAG	2 cut(s)	372, 420
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	297, 1131
StyI	CCWWGG	1 cut(s)	419
TaaI	ACNGT	1 cut(s)	634
TaiI	ACGT	2 cut(s)	351, 749
TaqI	TCGA	7 cut(s)	120, 219, 234, 354, 458, 469, 1123
TasI	AATT	3 cut(s)	203, 440, 461
TatI	WGTACW	1 cut(s)	533
TauI	GCSGC	3 cut(s)	275, 330, 397
TfiI	GAWTC	2 cut(s)	466, 737
Tru1I	TTAA	3 cut(s)	540, 552, 624
Tru9I	TTAA	3 cut(s)	540, 552, 624
TscAI	CASTG	1 cut(s)	113
TseFI	GTSAC	1 cut(s)	1066
TseI	GCWGC	1 cut(s)	324
Tsp45I	GTSAC	1 cut(s)	1066
TspDTI	ATGAA	9 cut(s)	106, 453, 647, 917, 1043, 1061, 1077, 1157, 1232
TspRI	CASTG	1 cut(s)	113
VspI	ATTAAT	1 cut(s)	552
XceI	RCATGY	1 cut(s)	505
XhoI	CTCGAG	1 cut(s)	1122
XmaJI	CCTAGG	1 cut(s)	419
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	2 cut(s)	372, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.