Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

36744174 .. 36745084

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034098

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGATTAATGTGTTGTGCAAAGAAGGCAAGTTGAACAAGGCAAAGGAGTTTCTTGGGTTTATGGAGATTTTGGGGATTAAGCCTAATGTAGAGGAGTTCAGCCGAATTCTTACACATATCTATGGATTGCTTATTAGTGGGATGTGTAAGGAGAGAAGACTTGATGAAGCTTCTGATCTTTTTGATAAAATACTAGAAATTGGGCTGCTTTCGAGTGCTGTTACTTATAACACCTTAATTGATGGTTATTGCAATAAGGGTGATCTGGACAAGGCTTTCAGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCTGACGGTGTCAACTTACAATTTGTTGATTCATGAATTGTTTATGGAAGGTAGGGTGAGTAAAGCTGATTGTATGGTGAGAGATGTGGAAGAGAAGGGAATGATTCCTGATGCCATTACGTCTGGGAATGCAAAGAAATTGTTTATCATTCGCGATGAAATGTTGAGTAAAGGGATAGAGCCCACTAAGGAAACTTATACATCACTTATTTATGTTTTGAGTAAAAGGAAGAGAATGAATGAGGCAGATGACTTGTTTGAGAAGATACTGCATAAGGGTGTTCTACCGGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTATGCTAATGGGAATATGGAGCGTGCATTTTTGCTTTCGAGGGAGATGGATAAAATGAAGGTACATCCAGATGAAGTGACTTACAATACCCTAATGCAAGGGCGCTGCAGGGCAGGGAAAGTTGAGGAAGCTCGGAACTTCTGGATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

264

Amino Acids

30.14

Weight (kDa)

6.55

Isoelectric Point (pI)

25.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	41 - 63	6.3e-06	PPR repeat
PPR_3	PF13812	61 - 116	3.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	68 - 100	1.1e-11	PPR repeat
PPR_2	PF13041	72 - 118	7.3e-16	PPR repeat family
PPR	PF01535	74 - 104	8e-11	PPR repeat
PPR_long	PF17177	147 - 254	4.5e-10	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	190 - 246	2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	201 - 250	2.3e-14	PPR repeat family
PPR_1	PF12854	234 - 260	5.8e-09	PPR repeat
PPR_2	PF13041	236 - 261	4.6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	228
AccII	CGCG	1 cut(s)	468
AclWI	GGATC	2 cut(s)	612, 791
AcsI	RAATTY	1 cut(s)	105
AfaI	GTAC	1 cut(s)	702
AgsI	TTSAA	2 cut(s)	34, 619
AluBI	AGCT	3 cut(s)	170, 380, 770
AluI	AGCT	3 cut(s)	170, 380, 770
AlwI	GGATC	2 cut(s)	612, 791
ApeKI	GCWGC	2 cut(s)	205, 744
ApoI	RAATTY	1 cut(s)	105
AseI	ATTAAT	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	744
AsuHPI	GGTGA	4 cut(s)	272, 310, 382, 403
BanII	GRGCYC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	163
BbvI	GCAGC	2 cut(s)	192, 731
BccI	CCATC	4 cut(s)	236, 289, 626, 679
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	745
BfoI	RGCGCY	1 cut(s)	745
BisI	GCNGC	2 cut(s)	206, 745
BlsI	GCNGC	2 cut(s)	207, 746
BmsI	GCATC	1 cut(s)	415
BpiI	GAAGAC	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	601
BseGI	GGATG	2 cut(s)	147, 703
BseRI	GAGGAG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	192, 731
Bsh1236I	CGCG	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	602
BsmI	GAATGC	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp143I	GATC	4 cut(s)	175, 262, 604, 783
Bsp68I	TCGCGA	1 cut(s)	468
BspFNI	CGCG	1 cut(s)	468
BspHI	TCATGA	1 cut(s)	346
BspMAI	CTGCAG	1 cut(s)	749
BspPI	GGATC	2 cut(s)	612, 791
BssMI	GATC	4 cut(s)	175, 262, 604, 783
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	2 cut(s)	399, 539
BstC8I	GCNNGC	1 cut(s)	663
BstDEI	CTNAG	1 cut(s)	501
BstF5I	GGATG	2 cut(s)	147, 703
BstFNI	CGCG	1 cut(s)	468
BstH2I	RGCGCY	1 cut(s)	745
BstHHI	GCGC	1 cut(s)	744
BstKTI	GATC	4 cut(s)	178, 265, 607, 786
BstMBI	GATC	4 cut(s)	175, 262, 604, 783
BstMWI	GCNNNNNNNGC	1 cut(s)	24
BstSFI	CTRYAG	1 cut(s)	745
BstUI	CGCG	1 cut(s)	468
BstV1I	GCAGC	2 cut(s)	192, 731
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
BtgZI	GCGATG	1 cut(s)	483
BtsCI	GGATG	2 cut(s)	147, 703
BtuMI	TCGCGA	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	663
CciI	TCATGA	1 cut(s)	346
CfoI	GCGC	1 cut(s)	744
Csp6I	GTAC	1 cut(s)	701
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	8 cut(s)	82, 102, 170, 205, 275, 380, 496, 770
CviKI_1	RGCY	8 cut(s)	82, 102, 170, 205, 275, 380, 496, 770
CviQI	GTAC	1 cut(s)	701
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	4 cut(s)	177, 264, 606, 785
DpnII	GATC	4 cut(s)	175, 262, 604, 783
Eam1104I	CTCTTC	2 cut(s)	399, 539
EarI	CTCTTC	2 cut(s)	399, 539
Eco24I	GRGCYC	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	498
FaeI	CATG	1 cut(s)	350
FatI	CATG	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	206, 745
FokI	GGATG	2 cut(s)	154, 690
FriOI	GRGCYC	1 cut(s)	498
Fsp4HI	GCNGC	2 cut(s)	206, 745
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	1 cut(s)	743
GluI	GCNGC	2 cut(s)	206, 745
HaeII	RGCGCY	1 cut(s)	745
HapII	CCGG	1 cut(s)	602
HhaI	GCGC	1 cut(s)	744
Hin1II	CATG	1 cut(s)	350
Hin6I	GCGC	1 cut(s)	742
HinP1I	GCGC	1 cut(s)	742
HincII	GTYRAC	1 cut(s)	327
HindII	GTYRAC	1 cut(s)	327
HindIII	AAGCTT	1 cut(s)	168
HinfI	GANTC	2 cut(s)	343, 418
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	4 cut(s)	272, 310, 382, 403
Hpy166II	GTNNAC	1 cut(s)	327
Hpy188I	TCNGA	3 cut(s)	175, 774, 788
Hpy188III	TCNNGA	6 cut(s)	266, 347, 422, 467, 707, 781
Hpy8I	GTNNAC	1 cut(s)	327
HpyAV	CCTTC	5 cut(s)	17, 298, 356, 403, 691
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4IV	ACGT	1 cut(s)	434
HpyCH4V	TGCA	7 cut(s)	18, 252, 446, 586, 665, 736, 747
HpyF10VI	GCNNNNNNNGC	1 cut(s)	24
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	434
Hsp92II	CATG	1 cut(s)	350
HspAI	GCGC	1 cut(s)	742
Kzo9I	GATC	4 cut(s)	175, 262, 604, 783
LmnI	GCTCC	1 cut(s)	658
LpnPI	CCDG	8 cut(s)	251, 423, 435, 615, 720, 733, 738, 766
Lsp1109I	GCAGC	2 cut(s)	192, 731
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	1 cut(s)	194
MaeII	ACGT	1 cut(s)	434
MaeIII	GTNAC	2 cut(s)	220, 715
MalI	GATC	4 cut(s)	177, 264, 606, 785
MboI	GATC	4 cut(s)	175, 262, 604, 783
MboII	GAAGA	5 cut(s)	168, 313, 416, 556, 589
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	6 cut(s)	105, 198, 237, 334, 350, 452
MnlI	CCTC	4 cut(s)	85, 550, 672, 757
MseI	TTAA	3 cut(s)	6, 78, 236
MslI	CAYNNNNRTG	3 cut(s)	120, 591, 708
MspI	CCGG	1 cut(s)	602
Mva1269I	GAATGC	1 cut(s)	448
MvnI	CGCG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	24
NdeII	GATC	4 cut(s)	175, 262, 604, 783
NlaIII	CATG	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	715
NruI	TCGCGA	1 cut(s)	468
PagI	TCATGA	1 cut(s)	346
PctI	GAATGC	1 cut(s)	448
PfeI	GAWTC	2 cut(s)	343, 418
PflFI	GACNNNGTC	1 cut(s)	322
PkrI	GCNGC	2 cut(s)	207, 746
PshBI	ATTAAT	1 cut(s)	6
PsiI	TTATAA	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	749
PsuI	RGATCY	1 cut(s)	604
PsyI	GACNNNGTC	1 cut(s)	322
RruI	TCGCGA	1 cut(s)	468
RsaI	GTAC	1 cut(s)	702
RsaNI	GTAC	1 cut(s)	701
RseI	CAYNNNNRTG	3 cut(s)	120, 591, 708
SaqAI	TTAA	3 cut(s)	6, 78, 236
SatI	GCNGC	2 cut(s)	206, 745
Sau3AI	GATC	4 cut(s)	175, 262, 604, 783
SduI	GDGCHC	1 cut(s)	498
SetI	ASST	7 cut(s)	172, 236, 367, 382, 437, 702, 772
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	745
SmiMI	CAYNNNNRTG	3 cut(s)	120, 591, 708
Sse9I	AATT	6 cut(s)	105, 198, 237, 334, 350, 452
SspMI	CTAG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	322
TaiI	ACGT	1 cut(s)	437
TaqI	TCGA	2 cut(s)	212, 677
TasI	AATT	6 cut(s)	105, 198, 237, 334, 350, 452
TfiI	GAWTC	2 cut(s)	343, 418
Tru1I	TTAA	3 cut(s)	6, 78, 236
Tru9I	TTAA	3 cut(s)	6, 78, 236
TseFI	GTSAC	1 cut(s)	715
TseI	GCWGC	2 cut(s)	205, 744
Tsp45I	GTSAC	1 cut(s)	715
TspDTI	ATGAA	7 cut(s)	180, 335, 363, 486, 566, 710, 726
Tth111I	GACNNNGTC	1 cut(s)	322
VspI	ATTAAT	1 cut(s)	6
XapI	RAATTY	1 cut(s)	105
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.