Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

38219272 .. 38220559

Gene Structure 1288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G026430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCCTAAGACTTGTAATGAATTGTTGAGTTTGTTTTCGAAATTGAATCTAACCGAGGGGGCTTGGAAGGCAAAGGAGTTTCTTGGGTTTATGGAGATTTTGGGGATTAAGCCTACTGTTGTTATTTATAATACTGTCATTCATGGGTTTTGTTTGAGAGGCAGAGTTGGAGGGGCTCCGATGATTTTTTGTGCTATGAAAATGAAAGGTAGAGGAGTTCAGCCGGATTCTTACACGTACGAGAGAAGACTTGATGAAGCTTGTGATATTTTTGATAAAATGCTGGAAATTGGGCTACTTCCGAGTGCTGTTACTTATAACACCTTGATTGATGGTTATTGCAATAAGGGTGATCTGGACAAGGTTTTCAGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCGACGGTGTCAACTTACAATTTTTTGATTCATGAATTGTTTATGGAAGGTAGGGTGAGTGAAGCTGATTGTATGGTTAGAGATGTGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAATATCCTCATTAATGGCTATTTAAAAGGGATAGAGCCCACTAAGGAAACTTACGCATCACTTATTTATGCTTTGAGTAAAAGGAAGAGAATGAATGAGGCAGATGACTTGTTTGAGAAGATACTGCATAAGGGTGTTCTACCGGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTGATGGGAATATGGAGCGTGCATTTTTGCTTTTGAGGGAGATGGATAAAATGAAGGTTCATCCAGATGAAGTGACTTACAATACCCTAATGCAAGGGCGCTGCAGGGCAGGGAAACCTGATTACATTAGTTACAACACCCTCATTAGTGGACATAGTAAACGAGGTGATATGAATGATGCCTTCAAAGTTCGAGACGAGATGTTGAGTATAGGTTTCAATCCTACACTTCTAACATACAATGCTCTTATAAAAGGTCTACGCAAAAACCAAGAAGGTGATCTTGCTCAAGAGCTCCTTAAAGAAATGGTGAGCAGAGGGATTACTCCCGATGACAGCACATATTACTCTCCGATTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

357

Amino Acids

40.48

Weight (kDa)

5.82

Isoelectric Point (pI)

29.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	35 - 66	2.9e-08	PPR repeat
PPR_2	PF13041	38 - 80	3e-10	PPR repeat family
PPR_3	PF13812	90 - 146	3.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	98 - 129	2.9e-10	PPR repeat
PPR_2	PF13041	101 - 148	1.4e-16	PPR repeat family
PPR	PF01535	104 - 134	8.1e-10	PPR repeat
PPR_2	PF13041	136 - 185	2e-12	PPR repeat family
PPR_long	PF17177	176 - 278	9.6e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	213 - 269	1.4e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	220 - 252	1e-10	PPR repeat
PPR_2	PF13041	224 - 273	4.1e-16	PPR repeat family
PPR	PF01535	227 - 256	2.7e-06	PPR repeat
PPR_1	PF12854	257 - 277	7.3e-06	PPR repeat
PPR_1	PF12854	276 - 305	1.6e-08	PPR repeat
PPR_3	PF13812	276 - 322	6.2e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	277 - 325	1.2e-14	PPR repeat family
PPR	PF01535	280 - 310	2.1e-07	PPR repeat
PPR_2	PF13041	312 - 352	1.5e-09	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	129, 318, 962
AccI	GTMKAC	1 cut(s)	970
AclWI	GGATC	1 cut(s)	681
AfaI	GTAC	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	4 cut(s)	46, 688, 898, 931
AluBI	AGCT	3 cut(s)	260, 470, 1006
AluI	AGCT	3 cut(s)	260, 470, 1006
Alw21I	GWGCWC	1 cut(s)	1008
Alw26I	GTCTC	1 cut(s)	900
AlwI	GGATC	1 cut(s)	681
ApeKI	GCWGC	1 cut(s)	813
AseI	ATTAAT	1 cut(s)	540
AspLEI	GCGC	1 cut(s)	813
AsuHPI	GGTGA	6 cut(s)	362, 400, 472, 890, 1001, 1033
AsuII	TTCGAA	1 cut(s)	38
BanII	GRGCYC	3 cut(s)	178, 567, 1008
BbsI	GAAGAC	1 cut(s)	253
Bbv12I	GWGCWC	1 cut(s)	1008
BbvI	GCAGC	1 cut(s)	800
BccI	CCATC	5 cut(s)	326, 379, 695, 710, 748
BcoDI	GTCTC	1 cut(s)	900
BfmI	CTRYAG	1 cut(s)	814
BfoI	RGCGCY	1 cut(s)	814
BisI	GCNGC	1 cut(s)	814
BlsI	GCNGC	1 cut(s)	815
BmiI	GGNNCC	2 cut(s)	177, 510
BmsI	GCATC	3 cut(s)	505, 593, 880
BpiI	GAAGAC	1 cut(s)	253
Bpu14I	TTCGAA	1 cut(s)	38
BpuEI	CTTGAG	1 cut(s)	984
BsaAI	YACGTR	2 cut(s)	237, 525
BsaJI	CCNNGG	1 cut(s)	54
BsaWI	WCCGGW	1 cut(s)	670
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	772
BseRI	GAGGAG	1 cut(s)	228
BseXI	GCAGC	1 cut(s)	800
BsiHKAI	GWGCWC	1 cut(s)	1008
BsiSI	CCGG	2 cut(s)	224, 671
BsiWI	CGTACG	1 cut(s)	237
BsmAI	GTCTC	1 cut(s)	900
BsmBI	CGTCTC	1 cut(s)	900
Bsp119I	TTCGAA	1 cut(s)	38
Bsp1286I	GDGCHC	3 cut(s)	178, 567, 1008
Bsp143I	GATC	3 cut(s)	352, 673, 991
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	177, 510
BspMAI	CTGCAG	1 cut(s)	818
BspPI	GGATC	1 cut(s)	681
BspT104I	TTCGAA	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	3 cut(s)	352, 673, 991
Bst4CI	ACNGT	3 cut(s)	118, 136, 412
Bst6I	CTCTTC	2 cut(s)	489, 608
BstBAI	YACGTR	2 cut(s)	237, 525
BstBI	TTCGAA	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	732
BstDEI	CTNAG	2 cut(s)	6, 570
BstF5I	GGATG	1 cut(s)	772
BstH2I	RGCGCY	1 cut(s)	814
BstHHI	GCGC	1 cut(s)	813
BstKTI	GATC	3 cut(s)	355, 676, 994
BstMAI	GTCTC	1 cut(s)	900
BstMBI	GATC	3 cut(s)	352, 673, 991
BstMWI	GCNNNNNNNGC	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	814
BstSNI	TACGTA	1 cut(s)	525
BstV1I	GCAGC	1 cut(s)	800
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	673
BtsCI	GGATG	1 cut(s)	772
Cac8I	GCNNGC	1 cut(s)	732
CciI	TCATGA	1 cut(s)	436
CfoI	GCGC	1 cut(s)	813
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	2 cut(s)	143, 437
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	6, 570
DpnI	GATC	3 cut(s)	354, 675, 993
DpnII	GATC	3 cut(s)	352, 673, 991
DraI	TTTAAA	1 cut(s)	552
Eam1104I	CTCTTC	2 cut(s)	489, 608
EarI	CTCTTC	2 cut(s)	489, 608
Ecl136II	GAGCTC	1 cut(s)	1006
Eco105I	TACGTA	1 cut(s)	525
Eco24I	GRGCYC	3 cut(s)	178, 567, 1008
Eco53kI	GAGCTC	1 cut(s)	1006
EcoICRI	GAGCTC	1 cut(s)	1006
EcoT38I	GRGCYC	3 cut(s)	178, 567, 1008
Esp3I	CGTCTC	1 cut(s)	900
FaeI	CATG	2 cut(s)	146, 440
FalI	AAGNNNNNCTT	4 cut(s)	978, 1010, 993, 1025
FatI	CATG	2 cut(s)	142, 436
FblI	GTMKAC	1 cut(s)	970
Fnu4HI	GCNGC	1 cut(s)	814
FokI	GGATG	1 cut(s)	759
FriOI	GRGCYC	3 cut(s)	178, 567, 1008
Fsp4HI	GCNGC	1 cut(s)	814
GlaI	GCGC	1 cut(s)	812
GluI	GCNGC	1 cut(s)	814
HaeII	RGCGCY	1 cut(s)	814
HapII	CCGG	2 cut(s)	224, 671
HhaI	GCGC	1 cut(s)	813
Hin1II	CATG	2 cut(s)	146, 440
Hin6I	GCGC	1 cut(s)	811
HinP1I	GCGC	1 cut(s)	811
HincII	GTYRAC	1 cut(s)	417
HindII	GTYRAC	1 cut(s)	417
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	3 cut(s)	46, 227, 433
HpaII	CCGG	2 cut(s)	224, 671
HphI	GGTGA	6 cut(s)	362, 400, 472, 890, 1001, 1033
Hpy166II	GTNNAC	4 cut(s)	417, 863, 872, 971
Hpy188I	TCNGA	3 cut(s)	180, 303, 1065
Hpy188III	TCNNGA	7 cut(s)	356, 437, 512, 776, 905, 1001, 1040
Hpy8I	GTNNAC	4 cut(s)	417, 863, 872, 971
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	7 cut(s)	61, 388, 446, 493, 760, 904, 980
HpyCH4III	ACNGT	3 cut(s)	118, 136, 412
HpyCH4IV	ACGT	2 cut(s)	236, 524
HpyCH4V	TGCA	5 cut(s)	342, 655, 734, 805, 816
HpyF10VI	GCNNNNNNNGC	1 cut(s)	68
HpyF3I	CTNAG	2 cut(s)	6, 570
HpySE526I	ACGT	2 cut(s)	236, 524
Hsp92II	CATG	2 cut(s)	146, 440
HspAI	GCGC	1 cut(s)	811
Kzo9I	GATC	3 cut(s)	352, 673, 991
LmnI	GCTCC	3 cut(s)	181, 727, 1011
LpnPI	CCDG	9 cut(s)	237, 269, 341, 525, 684, 789, 802, 807, 843
Lsp1109I	GCAGC	1 cut(s)	800
LweI	GCATC	3 cut(s)	505, 593, 880
MaeII	ACGT	2 cut(s)	236, 524
MaeIII	GTNAC	3 cut(s)	310, 784, 842
MalI	GATC	3 cut(s)	354, 675, 993
MboI	GATC	3 cut(s)	352, 673, 991
MboII	GAAGA	5 cut(s)	258, 403, 506, 625, 658
MflI	RGATCY	1 cut(s)	673
MhlI	GDGCHC	3 cut(s)	178, 567, 1008
MluCI	AATT	5 cut(s)	20, 41, 288, 424, 440
MmeI	TCCRAC	1 cut(s)	148
MseI	TTAA	4 cut(s)	108, 540, 551, 1011
MslI	CAYNNNNRTG	2 cut(s)	660, 777
MspI	CCGG	2 cut(s)	224, 671
MwoI	GCNNNNNNNGC	1 cut(s)	68
NdeII	GATC	3 cut(s)	352, 673, 991
NlaIII	CATG	2 cut(s)	146, 440
NlaIV	GGNNCC	2 cut(s)	177, 510
NmuCI	GTSAC	1 cut(s)	784
NspV	TTCGAA	1 cut(s)	38
PagI	TCATGA	1 cut(s)	436
PfeI	GAWTC	3 cut(s)	46, 227, 433
Pfl23II	CGTACG	1 cut(s)	237
PflFI	GACNNNGTC	1 cut(s)	412
PkrI	GCNGC	1 cut(s)	815
Ppu21I	YACGTR	2 cut(s)	237, 525
PshBI	ATTAAT	1 cut(s)	540
PsiI	TTATAA	3 cut(s)	129, 318, 962
Psp124BI	GAGCTC	1 cut(s)	1008
PspLI	CGTACG	1 cut(s)	237
PspN4I	GGNNCC	2 cut(s)	177, 510
PstI	CTGCAG	1 cut(s)	818
PsuI	RGATCY	1 cut(s)	673
PsyI	GACNNNGTC	1 cut(s)	412
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	2 cut(s)	660, 777
SacI	GAGCTC	1 cut(s)	1008
SaqAI	TTAA	4 cut(s)	108, 540, 551, 1011
SatI	GCNGC	1 cut(s)	814
Sau3AI	GATC	3 cut(s)	352, 673, 991
SduI	GDGCHC	3 cut(s)	178, 567, 1008
SfaNI	GCATC	3 cut(s)	505, 593, 880
SfcI	CTRYAG	1 cut(s)	814
SfuI	TTCGAA	1 cut(s)	38
SmiMI	CAYNNNNRTG	2 cut(s)	660, 777
SmlI	CTYRAG	1 cut(s)	999
SmoI	CTYRAG	1 cut(s)	999
SnaBI	TACGTA	1 cut(s)	525
Sse9I	AATT	5 cut(s)	20, 41, 288, 424, 440
SstI	GAGCTC	1 cut(s)	1008
TaaI	ACNGT	3 cut(s)	118, 136, 412
TaiI	ACGT	2 cut(s)	239, 527
TaqI	TCGA	2 cut(s)	38, 904
TasI	AATT	5 cut(s)	20, 41, 288, 424, 440
TfiI	GAWTC	3 cut(s)	46, 227, 433
Tru1I	TTAA	4 cut(s)	108, 540, 551, 1011
Tru9I	TTAA	4 cut(s)	108, 540, 551, 1011
TseFI	GTSAC	1 cut(s)	784
TseI	GCWGC	1 cut(s)	813
Tsp45I	GTSAC	1 cut(s)	784
Tth111I	GACNNNGTC	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	540
XmiI	GTMKAC	1 cut(s)	970

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.