Rroxscaffold_5G00368980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000571
Physical Location & Seq
Forward (+)
50782384 .. 50788865
6482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00368980.1

Sequence Viewer

Length: 657 bp
ATGGCCTACCTCCTTTCAAGAGATTCAAAATCATGCAGCAACCAGCACCGCCACCATGACAATGACGTCATTTTGCCCATTCTTCGGCTAAGAAGAGAAAGGAGACTAGGGACCAGCCCATTCTCCCTAACCCAACTCCCGCCACCTTCGCCATCACCACCTATTTGTTGCGGCGAAGAAGAGAGTCGGAGTTTACTGCTAATTCGATTCAGGCCGCAGGATCAACACGTAGACGGCAATGATAAAAGGCTAGGGCAACGTCTCCCTGAAATTGATATCGACAATGAAGAAAAAACCCCAGTACCCTACCCTCCTAGTTCATATGAAATCCCAAATCGGCAAATCCTAAACCCCCGATCCTCATTCAATCATCTGAAATCCCAAAGCTCAAACACCCAACCCTTTCTAATCCCAAATTCCCAATTCTCAAATCATCTAACCTTACCAAATGGCTTCGATTCAAGTACTCCTGGTCCAGATAATGAGATTGTCCTTACGAAGAAGAAGTTCAGTCACATCATCACCAAGAAGTCGAAAGCAGCAGCAAAACTTGGGTTTTTTCTTGTTGTGTACAAGAACCGAAAACAATGCATAACCGAACCGAAAAAACTGTTCTGGTTTCAAAATGGTTCCGGCAATGAAAAGCGTCGTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.98

Weight (kDa)

9.78

Isoelectric Point (pI)

72.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 65
AatII GACGTC 1 cut(s) 69
AccI GTMKAC 1 cut(s) 231
AciI CCGC 4 cut(s) 49, 140, 171, 215
AclWI GGATC 2 cut(s) 228, 351
AcsI RAATTY 1 cut(s) 415
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 3 cut(s) 303, 466, 572
AfiI CCNNNNNNNGG 1 cut(s) 84
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 5 cut(s) 18, 27, 367, 462, 623
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 1 cut(s) 387
AluI AGCT 1 cut(s) 387
Alw26I GTCTC 2 cut(s) 97, 266
AlwI GGATC 2 cut(s) 228, 351
AoxI GGCC 2 cut(s) 3, 212
ApeKI GCWGC 3 cut(s) 36, 539, 542
ApoI RAATTY 1 cut(s) 415
Asp700I GAANNNNTTC 1 cut(s) 506
AspS9I GGNCC 2 cut(s) 111, 473
AsuHPI GGTGA 2 cut(s) 147, 514
AvaII GGWCC 2 cut(s) 111, 473
BaeI ACNNNNGTAYC 2 cut(s) 285, 318
BbvI GCAGC 3 cut(s) 48, 551, 554
BccI CCATC 1 cut(s) 160
BceAI ACGGC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 570, 604
BciT130I CCWGG 1 cut(s) 471
BcoDI GTCTC 2 cut(s) 97, 266
BfaI CTAG 3 cut(s) 107, 251, 315
BisI GCNGC 5 cut(s) 37, 172, 215, 540, 543
BlsI GCNGC 5 cut(s) 38, 173, 216, 541, 544
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 1 cut(s) 471
Bme18I GGWCC 2 cut(s) 111, 473
BmgT120I GGNCC 2 cut(s) 111, 473
BmiI GGNNCC 2 cut(s) 112, 631
BmrFI CCNGG 1 cut(s) 471
BmrI ACTGGG 1 cut(s) 293
BmuI ACTGGG 1 cut(s) 293
BsaAI YACGTR 1 cut(s) 229
BsaHI GRCGYC 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 2 cut(s) 244, 643
BseBI CCWGG 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 2 cut(s) 244, 643
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 48, 551, 554
BshFI GGCC 2 cut(s) 5, 214
BsiSI CCGG 1 cut(s) 633
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 2 cut(s) 97, 266
BsmBI CGTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 2 cut(s) 5, 214
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 2 cut(s) 220, 356
BspACI CCGC 4 cut(s) 49, 140, 171, 215
BspANI GGCC 2 cut(s) 5, 214
BspLI GGNNCC 2 cut(s) 112, 631
BspPI GGATC 2 cut(s) 228, 351
BsrDI GCAATG 2 cut(s) 244, 643
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 1 cut(s) 299
BssMI GATC 2 cut(s) 220, 356
BssNI GRCGYC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 1 cut(s) 612
Bst6I CTCTTC 2 cut(s) 88, 174
BstACI GRCGYC 1 cut(s) 66
BstAUI TGTACA 1 cut(s) 570
BstBAI YACGTR 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 89
BstKTI GATC 2 cut(s) 223, 359
BstMAI GTCTC 2 cut(s) 97, 266
BstMBI GATC 2 cut(s) 220, 356
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 469
BstV1I GCAGC 3 cut(s) 48, 551, 554
BsuRI GGCC 2 cut(s) 5, 214
Cfr13I GGNCC 2 cut(s) 111, 473
CseI GACGC 1 cut(s) 635
Csp6I GTAC 3 cut(s) 302, 465, 571
CviAII CATG 2 cut(s) 33, 56
CviJI RGCY 7 cut(s) 5, 88, 117, 214, 250, 387, 453
CviKI_1 RGCY 7 cut(s) 5, 88, 117, 214, 250, 387, 453
CviQI GTAC 3 cut(s) 302, 465, 571
DdeI CTNAG 1 cut(s) 89
DpnI GATC 2 cut(s) 222, 358
DpnII GATC 2 cut(s) 220, 356
DrdI GACNNNNNNGTC 1 cut(s) 65
DseDI GACNNNNNNGTC 1 cut(s) 65
Eam1104I CTCTTC 2 cut(s) 88, 174
EarI CTCTTC 2 cut(s) 88, 174
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 2 cut(s) 111, 473
EcoRII CCWGG 1 cut(s) 469
EcoRV GATATC 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 593
Esp3I CGTCTC 1 cut(s) 266
FaeI CATG 2 cut(s) 36, 59
FaiI YATR 5 cut(s) 34, 57, 322, 324, 593
FaqI GGGAC 1 cut(s) 124
FatI CATG 2 cut(s) 32, 55
FauI CCCGC 1 cut(s) 147
FauNDI CATATG 1 cut(s) 322
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 5 cut(s) 37, 172, 215, 540, 543
Fsp4HI GCNGC 5 cut(s) 37, 172, 215, 540, 543
FspBI CTAG 3 cut(s) 107, 251, 315
GluI GCNGC 5 cut(s) 37, 172, 215, 540, 543
HaeIII GGCC 2 cut(s) 5, 214
HapII CCGG 1 cut(s) 633
HgaI GACGC 1 cut(s) 635
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 2 cut(s) 36, 59
HinfI GANTC 4 cut(s) 23, 184, 207, 458
HpaII CCGG 1 cut(s) 633
HphI GGTGA 2 cut(s) 147, 514
Hpy166II GTNNAC 3 cut(s) 194, 232, 571
Hpy188I TCNGA 2 cut(s) 189, 375
Hpy188III TCNNGA 2 cut(s) 18, 476
Hpy8I GTNNAC 3 cut(s) 194, 232, 571
Hpy99I CGWCG 1 cut(s) 651
HpyAV CCTTC 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 612
HpyCH4IV ACGT 3 cut(s) 66, 228, 259
HpyCH4V TGCA 2 cut(s) 36, 591
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 3 cut(s) 66, 228, 259
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 2 cut(s) 36, 59
Kzo9I GATC 2 cut(s) 220, 356
Lsp1109I GCAGC 3 cut(s) 48, 551, 554
MaeI CTAG 3 cut(s) 107, 251, 315
MaeII ACGT 3 cut(s) 66, 228, 259
MaeIII GTNAC 2 cut(s) 512, 650
MalI GATC 2 cut(s) 222, 358
MboI GATC 2 cut(s) 220, 356
MboII GAAGA 7 cut(s) 74, 105, 188, 191, 299, 511, 514
MluCI AATT 4 cut(s) 201, 270, 415, 422
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 167
MnlI CCTC 3 cut(s) 20, 321, 370
Mph1103I ATGCAT 1 cut(s) 593
MroXI GAANNNNTTC 1 cut(s) 506
MslI CAYNNNNRTG 1 cut(s) 60
MspI CCGG 1 cut(s) 633
MspR9I CCNGG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 471
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeI CATATG 1 cut(s) 322
NdeII GATC 2 cut(s) 220, 356
NlaIII CATG 2 cut(s) 36, 59
NlaIV GGNNCC 2 cut(s) 112, 631
NmuCI GTSAC 1 cut(s) 512
NsiI ATGCAT 1 cut(s) 593
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 3 cut(s) 23, 207, 458
PkrI GCNGC 5 cut(s) 38, 173, 216, 541, 544
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Ppu21I YACGTR 1 cut(s) 229
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 2 cut(s) 112, 631
PspPI GGNCC 2 cut(s) 111, 473
RsaI GTAC 3 cut(s) 303, 466, 572
RsaNI GTAC 3 cut(s) 302, 465, 571
RseI CAYNNNNRTG 1 cut(s) 60
SatI GCNGC 5 cut(s) 37, 172, 215, 540, 543
Sau3AI GATC 2 cut(s) 220, 356
Sau96I GGNCC 2 cut(s) 111, 473
ScaI AGTACT 1 cut(s) 466
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 471
SetI ASST 8 cut(s) 12, 69, 148, 163, 231, 262, 389, 443
SinI GGWCC 2 cut(s) 111, 473
SmiMI CAYNNNNRTG 1 cut(s) 60
Sse9I AATT 4 cut(s) 201, 270, 415, 422
SsiI CCGC 4 cut(s) 49, 140, 171, 215
SspMI CTAG 3 cut(s) 107, 251, 315
StyD4I CCNGG 1 cut(s) 469
TaaI ACNGT 1 cut(s) 612
TaiI ACGT 3 cut(s) 69, 231, 262
TaqI TCGA 4 cut(s) 205, 279, 456, 533
TasI AATT 4 cut(s) 201, 270, 415, 422
TatI WGTACW 2 cut(s) 464, 570
TauI GCSGC 2 cut(s) 174, 217
TfiI GAWTC 3 cut(s) 23, 207, 458
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 3 cut(s) 36, 539, 542
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 4 cut(s) 300, 309, 339, 654
VpaK11BI GGWCC 2 cut(s) 111, 473
XapI RAATTY 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 231
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 3 cut(s) 107, 251, 315
ZraI GACGTC 1 cut(s) 67
ZrmI AGTACT 1 cut(s) 466
Zsp2I ATGCAT 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.