Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

20863494 .. 20864277

Gene Structure 784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0228100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGTCCCCATTCAGTAGCAGCGTTGATGATCCTGATCACCCTTGTAACCACAACTCACTGCATCAACAACACCATCACCTCTAGATCATCATCTTGGTGCGTTGGCGGCCGCACCGACGACCCCTCGTGCCTTGTCGGAGAGACTGACTTGGACTCGGATGAGTTCATGATGGATTCCGAAATCAGCCGAAGAATCCTGGCTGGAAATTCCGGAACTAAAAATGCATTGGATCCTGCAAAGGCTTCGTCATGTGACCGAAGCGATCCTCAATGCCACTCCGGTACGAAAAATCCGAACCCCCCAGGAGTAGACTGTGCCAAGGCTCAATACAATCGCGGCTGCCACCATTACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

119

Amino Acids

12.74

Weight (kDa)

5.87

Isoelectric Point (pI)

62.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	312
AccII	CGCG	1 cut(s)	339
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	3 cut(s)	108, 112, 339
AclWI	GGATC	4 cut(s)	25, 227, 240, 260
AcoI	YGGCCR	1 cut(s)	109
AcsI	RAATTY	1 cut(s)	208
AfaI	GTAC	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	198, 304
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	4 cut(s)	25, 227, 240, 260
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	1 cut(s)	109
ApeKI	GCWGC	2 cut(s)	20, 342
ApoI	RAATTY	1 cut(s)	208
ArsI	GACNNNNNNTTYG	2 cut(s)	233, 265
AsuHPI	GGTGA	2 cut(s)	31, 70
BamHI	GGATCC	1 cut(s)	232
BauI	CACGAG	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	32, 329
BccI	CCATC	2 cut(s)	83, 166
BcgI	CGANNNNNNTGC	2 cut(s)	228, 262
BciT130I	CCWGG	2 cut(s)	200, 306
BclI	TGATCA	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	1 cut(s)	84
BisI	GCNGC	5 cut(s)	21, 109, 112, 340, 343
BlsI	GCNGC	5 cut(s)	22, 110, 113, 341, 344
Bme1390I	CCNGG	2 cut(s)	200, 306
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	200, 306
BmsI	GCATC	1 cut(s)	72
BsaBI	GATNNNNATC	2 cut(s)	35, 91
BsaJI	CCNNGG	2 cut(s)	304, 321
BsaWI	WCCGGW	2 cut(s)	212, 281
Bse8I	GATNNNNATC	2 cut(s)	35, 91
BseAI	TCCGGA	1 cut(s)	212
BseBI	CCWGG	2 cut(s)	200, 306
BseDI	CCNNGG	2 cut(s)	304, 321
BseGI	GGATG	1 cut(s)	166
BseJI	GATNNNNATC	2 cut(s)	35, 91
BseX3I	CGGCCG	1 cut(s)	109
BseXI	GCAGC	2 cut(s)	32, 329
Bsh1236I	CGCG	1 cut(s)	339
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	1 cut(s)	111
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	2 cut(s)	213, 282
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	111
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	5 cut(s)	30, 36, 86, 232, 265
BspACI	CCGC	3 cut(s)	108, 112, 339
BspANI	GGCC	1 cut(s)	111
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	339
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	234
BspPI	GGATC	4 cut(s)	25, 227, 240, 260
BssECI	CCNNGG	2 cut(s)	304, 321
BssMI	GATC	5 cut(s)	30, 36, 86, 232, 265
BssSI	CACGAG	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	127
Bst2UI	CCWGG	2 cut(s)	200, 306
Bst4CI	ACNGT	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	339
BstKTI	GATC	5 cut(s)	33, 39, 89, 235, 268
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	5 cut(s)	30, 36, 86, 232, 265
BstMCI	CGRYCG	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	2 cut(s)	200, 306
BstSCI	CCNGG	2 cut(s)	198, 304
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	2 cut(s)	32, 329
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BstZI	CGGCCG	1 cut(s)	109
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	166
BtsI	GCAGTG	1 cut(s)	58
BtsIMutI	CAGTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	168
CciNI	GCGGCCGC	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	2 cut(s)	169, 252
CviJI	RGCY	6 cut(s)	111, 189, 203, 245, 326, 342
CviKI_1	RGCY	6 cut(s)	111, 189, 203, 245, 326, 342
CviQI	GTAC	1 cut(s)	285
DpnI	GATC	5 cut(s)	32, 38, 88, 234, 267
DpnII	GATC	5 cut(s)	30, 36, 86, 232, 265
EaeI	YGGCCR	1 cut(s)	109
EagI	CGGCCG	1 cut(s)	109
EclXI	CGGCCG	1 cut(s)	109
Eco130I	CCWWGG	1 cut(s)	321
Eco52I	CGGCCG	1 cut(s)	109
EcoRII	CCWGG	2 cut(s)	198, 304
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	1 cut(s)	229
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	172, 255
FaiI	YATR	2 cut(s)	170, 253
FatI	CATG	2 cut(s)	168, 251
FbaI	TGATCA	1 cut(s)	36
FblI	GTMKAC	1 cut(s)	312
Fnu4HI	GCNGC	5 cut(s)	21, 109, 112, 340, 343
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	5 cut(s)	21, 109, 112, 340, 343
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	5 cut(s)	21, 109, 112, 340, 343
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	213, 282
Hin1II	CATG	2 cut(s)	172, 255
HinfI	GANTC	4 cut(s)	4, 155, 176, 195
HpaII	CCGG	2 cut(s)	213, 282
HphI	GGTGA	2 cut(s)	31, 70
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	4 cut(s)	140, 160, 181, 297
Hpy188III	TCNNGA	4 cut(s)	34, 84, 169, 213
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	3 cut(s)	63, 227, 239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	172, 255
Kpn2I	TCCGGA	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	30, 36, 86, 232, 265
LpnPI	CCDG	9 cut(s)	47, 185, 189, 212, 226, 249, 291, 295, 318
Lsp1109I	GCAGC	2 cut(s)	32, 329
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	46, 254
MalI	GATC	5 cut(s)	32, 38, 88, 234, 267
MboI	GATC	5 cut(s)	30, 36, 86, 232, 265
MboII	GAAGA	1 cut(s)	204
MflI	RGATCY	1 cut(s)	232
MluCI	AATT	1 cut(s)	208
MlyI	GAGTC	2 cut(s)	13, 149
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	3 cut(s)	91, 136, 279
Mph1103I	ATGCAT	1 cut(s)	229
MroI	TCCGGA	1 cut(s)	212
MslI	CAYNNNNRTG	1 cut(s)	97
MspI	CCGG	2 cut(s)	213, 282
MspR9I	CCNGG	2 cut(s)	200, 306
MvaI	CCWGG	2 cut(s)	200, 306
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	5 cut(s)	30, 36, 86, 232, 265
NlaIII	CATG	2 cut(s)	172, 255
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	254
NotI	GCGGCCGC	1 cut(s)	109
NsiI	ATGCAT	1 cut(s)	229
PagI	TCATGA	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	293
PfeI	GAWTC	2 cut(s)	176, 195
PkrI	GCNGC	5 cut(s)	22, 110, 113, 341, 344
PleI	GAGTC	2 cut(s)	12, 149
PpsI	GAGTC	2 cut(s)	12, 149
Psp6I	CCWGG	2 cut(s)	198, 304
PspGI	CCWGG	2 cut(s)	198, 304
PspN4I	GGNNCC	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	1 cut(s)	97
SatI	GCNGC	5 cut(s)	21, 109, 112, 340, 343
Sau3AI	GATC	5 cut(s)	30, 36, 86, 232, 265
SchI	GAGTC	2 cut(s)	13, 149
ScrFI	CCNGG	2 cut(s)	200, 306
SetI	ASST	1 cut(s)	83
SfaNI	GCATC	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	97
Sse9I	AATT	1 cut(s)	208
SsiI	CCGC	3 cut(s)	108, 112, 339
SspMI	CTAG	1 cut(s)	84
StyD4I	CCNGG	2 cut(s)	198, 304
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	317
TaqII	GACCGA	1 cut(s)	273
TasI	AATT	1 cut(s)	208
TauI	GCSGC	3 cut(s)	111, 114, 342
TfiI	GAWTC	2 cut(s)	176, 195
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	254
TseI	GCWGC	2 cut(s)	20, 342
Tsp45I	GTSAC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	157
TspRI	CASTG	1 cut(s)	65
XapI	RAATTY	1 cut(s)	208
XbaI	TCTAGA	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	312
XspI	CTAG	1 cut(s)	84
Zsp2I	ATGCAT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.