Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 321 |
| AccI | GTMKAC | 1 cut(s) | 291 |
| AccII | CGCG | 1 cut(s) | 445 |
| AccIII | TCCGGA | 1 cut(s) | 1513 |
| AciI | CCGC | 8 cut(s) | 87, 145, 301, 346, 366, 445, 915, 1650 |
| AclWI | GGATC | 1 cut(s) | 456 |
| AcoI | YGGCCR | 1 cut(s) | 1441 |
| AcsI | RAATTY | 2 cut(s) | 275, 670 |
| AcuI | CTGAAG | 3 cut(s) | 749, 923, 1809 |
| AfaI | GTAC | 2 cut(s) | 685, 1794 |
| AjiI | CACGTC | 1 cut(s) | 582 |
| AjnI | CCWGG | 1 cut(s) | 303 |
| AluBI | AGCT | 3 cut(s) | 49, 727, 1157 |
| AluI | AGCT | 3 cut(s) | 49, 727, 1157 |
| Alw26I | GTCTC | 1 cut(s) | 572 |
| AlwI | GGATC | 1 cut(s) | 456 |
| Aor13HI | TCCGGA | 1 cut(s) | 1513 |
| AoxI | GGCC | 4 cut(s) | 234, 342, 516, 1441 |
| ApeKI | GCWGC | 1 cut(s) | 468 |
| ApoI | RAATTY | 2 cut(s) | 275, 670 |
| AseI | ATTAAT | 1 cut(s) | 702 |
| AspS9I | GGNCC | 4 cut(s) | 235, 343, 1411, 1591 |
| AsuC2I | CCSGG | 1 cut(s) | 319 |
| AsuHPI | GGTGA | 5 cut(s) | 290, 1049, 1087, 1679, 1790 |
| AvaII | GGWCC | 2 cut(s) | 1411, 1591 |
| BalI | TGGCCA | 1 cut(s) | 1443 |
| BanI | GGYRCC | 1 cut(s) | 321 |
| BanII | GRGCYC | 1 cut(s) | 844 |
| BbsI | GAAGAC | 2 cut(s) | 345, 940 |
| BbvI | GCAGC | 1 cut(s) | 480 |
| BccI | CCATC | 9 cut(s) | 173, 338, 541, 1013, 1066, 1141, 1159, 1433, 1486 |
| BceAI | ACGGC | 1 cut(s) | 1246 |
| BciT130I | CCWGG | 1 cut(s) | 305 |
| BclI | TGATCA | 1 cut(s) | 1621 |
| BcnI | CCSGG | 1 cut(s) | 319 |
| BcoDI | GTCTC | 1 cut(s) | 572 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 341, 524 |
| BisI | GCNGC | 1 cut(s) | 469 |
| BlsI | GCNGC | 1 cut(s) | 470 |
| BmcAI | AGTACT | 1 cut(s) | 1794 |
| Bme1390I | CCNGG | 2 cut(s) | 305, 319 |
| Bme18I | GGWCC | 2 cut(s) | 1411, 1591 |
| BmgBI | CACGTC | 1 cut(s) | 582 |
| BmgT120I | GGNCC | 4 cut(s) | 235, 343, 1411, 1591 |
| BmiI | GGNNCC | 1 cut(s) | 323 |
| BmrFI | CCNGG | 2 cut(s) | 305, 319 |
| BmsI | GCATC | 2 cut(s) | 480, 1669 |
| BpiI | GAAGAC | 2 cut(s) | 345, 940 |
| Bpu10I | CCTNAGC | 1 cut(s) | 491 |
| BpuMI | CCSGG | 1 cut(s) | 319 |
| Bsa29I | ATCGAT | 1 cut(s) | 1295 |
| BsaJI | CCNNGG | 1 cut(s) | 231 |
| BsaWI | WCCGGW | 1 cut(s) | 1513 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 65, 95, 115, 145, 617, 647 |
| Bse1I | ACTGG | 2 cut(s) | 349, 438 |
| Bse3DI | GCAATG | 2 cut(s) | 402, 592 |
| BseAI | TCCGGA | 1 cut(s) | 1513 |
| BseBI | CCWGG | 1 cut(s) | 305 |
| BseCI | ATCGAT | 1 cut(s) | 1295 |
| BseDI | CCNNGG | 1 cut(s) | 231 |
| BseGI | GGATG | 8 cut(s) | 109, 165, 924, 1152, 1218, 1510, 1522, 1684 |
| BseMI | GCAATG | 2 cut(s) | 402, 592 |
| BseMII | CTCAG | 6 cut(s) | 41, 64, 191, 567, 587, 639 |
| BseNI | ACTGG | 2 cut(s) | 349, 438 |
| BseRI | GAGGAG | 2 cut(s) | 8, 73 |
| BseXI | GCAGC | 1 cut(s) | 480 |
| Bsh1236I | CGCG | 1 cut(s) | 445 |
| BshFI | GGCC | 4 cut(s) | 236, 344, 518, 1443 |
| BshNI | GGYRCC | 1 cut(s) | 321 |
| BshVI | ATCGAT | 1 cut(s) | 1295 |
| BsiSI | CCGG | 4 cut(s) | 319, 884, 1409, 1514 |
| BslFI | GGGAC | 1 cut(s) | 1709 |
| BsmAI | GTCTC | 1 cut(s) | 572 |
| BsmBI | CGTCTC | 1 cut(s) | 572 |
| BsmFI | GGGAC | 1 cut(s) | 1709 |
| BsmI | GAATGC | 1 cut(s) | 1255 |
| BsnI | GGCC | 4 cut(s) | 236, 344, 518, 1443 |
| Bsp1286I | GDGCHC | 1 cut(s) | 844 |
| Bsp13I | TCCGGA | 1 cut(s) | 1513 |
| Bsp143I | GATC | 5 cut(s) | 448, 849, 1039, 1621, 1780 |
| BspACI | CCGC | 8 cut(s) | 87, 145, 301, 346, 366, 445, 915, 1650 |
| BspANI | GGCC | 4 cut(s) | 236, 344, 518, 1443 |
| BspCNI | CTCAG | 6 cut(s) | 40, 63, 190, 568, 588, 640 |
| BspDI | ATCGAT | 1 cut(s) | 1295 |
| BspEI | TCCGGA | 1 cut(s) | 1513 |
| BspFNI | CGCG | 1 cut(s) | 445 |
| BspLI | GGNNCC | 1 cut(s) | 323 |
| BspPI | GGATC | 1 cut(s) | 456 |
| BspT107I | GGYRCC | 1 cut(s) | 321 |
| BsrDI | GCAATG | 2 cut(s) | 402, 592 |
| BsrI | ACTGG | 2 cut(s) | 349, 438 |
| BssECI | CCNNGG | 1 cut(s) | 231 |
| BssMI | GATC | 5 cut(s) | 448, 849, 1039, 1621, 1780 |
| Bst2UI | CCWGG | 1 cut(s) | 305 |
| Bst4CI | ACNGT | 4 cut(s) | 802, 1099, 1448, 1457 |
| Bst6I | CTCTTC | 3 cut(s) | 103, 1176, 1595 |
| BstC8I | GCNNGC | 3 cut(s) | 346, 1470, 1556 |
| BstF5I | GGATG | 8 cut(s) | 109, 165, 924, 1152, 1218, 1510, 1522, 1684 |
| BstFNI | CGCG | 1 cut(s) | 445 |
| BstKTI | GATC | 5 cut(s) | 451, 852, 1042, 1624, 1783 |
| BstMAI | GTCTC | 1 cut(s) | 572 |
| BstMBI | GATC | 5 cut(s) | 448, 849, 1039, 1621, 1780 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 341, 524, 921, 1259, 1555 |
| BstNI | CCWGG | 1 cut(s) | 305 |
| BstNSI | RCATGY | 1 cut(s) | 595 |
| BstSCI | CCNGG | 2 cut(s) | 303, 317 |
| BstUI | CGCG | 1 cut(s) | 445 |
| BstV1I | GCAGC | 1 cut(s) | 480 |
| BstV2I | GAAGAC | 2 cut(s) | 345, 940 |
| Bsu15I | ATCGAT | 1 cut(s) | 1295 |
| BsuRI | GGCC | 4 cut(s) | 236, 344, 518, 1443 |
| BsuTUI | ATCGAT | 1 cut(s) | 1295 |
| BtgZI | GCGATG | 1 cut(s) | 316 |
| BtrI | CACGTC | 1 cut(s) | 582 |
| BtsCI | GGATG | 8 cut(s) | 109, 165, 924, 1152, 1218, 1510, 1522, 1684 |
| BtsI | GCAGTG | 1 cut(s) | 954 |
| BtsIMutI | CAGTG | 4 cut(s) | 185, 431, 954, 1444 |
| Cac8I | GCNNGC | 3 cut(s) | 346, 1470, 1556 |
| Cfr13I | GGNCC | 4 cut(s) | 235, 343, 1411, 1591 |
| ClaI | ATCGAT | 1 cut(s) | 1295 |
| Csp6I | GTAC | 2 cut(s) | 684, 1793 |
| CviAII | CATG | 4 cut(s) | 592, 809, 1124, 1462 |
| CviQI | GTAC | 2 cut(s) | 684, 1793 |
| DpnI | GATC | 5 cut(s) | 450, 851, 1041, 1623, 1782 |
| DpnII | GATC | 5 cut(s) | 448, 849, 1039, 1621, 1780 |
| DraI | TTTAAA | 1 cut(s) | 1687 |
| EaeI | YGGCCR | 1 cut(s) | 1441 |
| Eam1104I | CTCTTC | 3 cut(s) | 103, 1176, 1595 |
| EarI | CTCTTC | 3 cut(s) | 103, 1176, 1595 |
| Eco24I | GRGCYC | 1 cut(s) | 844 |
| Eco32I | GATATC | 1 cut(s) | 310 |
| Eco47I | GGWCC | 2 cut(s) | 1411, 1591 |
| Eco57I | CTGAAG | 3 cut(s) | 749, 923, 1809 |
| EcoO109I | RGGNCCY | 1 cut(s) | 235 |
| EcoRI | GAATTC | 1 cut(s) | 275 |
| EcoRII | CCWGG | 1 cut(s) | 303 |
| EcoRV | GATATC | 1 cut(s) | 310 |
| EcoT22I | ATGCAT | 1 cut(s) | 1129 |
| EcoT38I | GRGCYC | 1 cut(s) | 844 |
| Esp3I | CGTCTC | 1 cut(s) | 572 |
| FaeI | CATG | 4 cut(s) | 595, 812, 1127, 1465 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 1247, 1279, 1667, 1699, 1767, 1799, 1782, 1814 |
| FaqI | GGGAC | 1 cut(s) | 1709 |
| FatI | CATG | 4 cut(s) | 591, 808, 1123, 1461 |
| FauI | CCCGC | 5 cut(s) | 152, 353, 373, 438, 908 |
| FbaI | TGATCA | 1 cut(s) | 1621 |
| FblI | GTMKAC | 1 cut(s) | 291 |
| Fnu4HI | GCNGC | 1 cut(s) | 469 |
| FokI | GGATG | 8 cut(s) | 96, 152, 931, 1159, 1205, 1497, 1529, 1691 |
| FriOI | GRGCYC | 1 cut(s) | 844 |
| Fsp4HI | GCNGC | 1 cut(s) | 469 |
| GluI | GCNGC | 1 cut(s) | 469 |
| HaeIII | GGCC | 4 cut(s) | 236, 344, 518, 1443 |
| HapII | CCGG | 4 cut(s) | 319, 884, 1409, 1514 |
| Hin1II | CATG | 4 cut(s) | 595, 812, 1127, 1465 |
| HincII | GTYRAC | 4 cut(s) | 292, 532, 1104, 1583 |
| HindII | GTYRAC | 4 cut(s) | 292, 532, 1104, 1583 |
| HindIII | AAGCTT | 1 cut(s) | 1155 |
| HinfI | GANTC | 2 cut(s) | 887, 1120 |
| HpaII | CCGG | 4 cut(s) | 319, 884, 1409, 1514 |
| HphI | GGTGA | 5 cut(s) | 290, 1049, 1087, 1679, 1790 |
| Hpy166II | GTNNAC | 4 cut(s) | 292, 532, 1104, 1583 |
| Hpy188I | TCNGA | 4 cut(s) | 30, 53, 232, 416 |
| Hpy8I | GTNNAC | 4 cut(s) | 292, 532, 1104, 1583 |
| Hpy99I | CGWCG | 1 cut(s) | 524 |
| HpyCH4III | ACNGT | 4 cut(s) | 802, 1099, 1448, 1457 |
| HpyCH4IV | ACGT | 2 cut(s) | 581, 686 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 341, 524, 921, 1259, 1555 |
| HpySE526I | ACGT | 2 cut(s) | 581, 686 |
| Hsp92II | CATG | 4 cut(s) | 595, 812, 1127, 1465 |
| Kpn2I | TCCGGA | 1 cut(s) | 1513 |
| Ksp22I | TGATCA | 1 cut(s) | 1621 |
| Kzo9I | GATC | 5 cut(s) | 448, 849, 1039, 1621, 1780 |
| LmnI | GCTCC | 2 cut(s) | 82, 1465 |
| Lsp1109I | GCAGC | 1 cut(s) | 480 |
| LweI | GCATC | 2 cut(s) | 480, 1669 |
| MaeII | ACGT | 2 cut(s) | 581, 686 |
| MaeIII | GTNAC | 6 cut(s) | 787, 997, 1312, 1457, 1522, 1631 |
| MalI | GATC | 5 cut(s) | 450, 851, 1041, 1623, 1782 |
| MboI | GATC | 5 cut(s) | 448, 849, 1039, 1621, 1780 |
| MhlI | GDGCHC | 1 cut(s) | 844 |
| MlsI | TGGCCA | 1 cut(s) | 1443 |
| MluCI | AATT | 9 cut(s) | 275, 611, 670, 804, 975, 1111, 1206, 1224, 1644 |
| MluNI | TGGCCA | 1 cut(s) | 1443 |
| Mox20I | TGGCCA | 1 cut(s) | 1443 |
| Mph1103I | ATGCAT | 1 cut(s) | 1129 |
| MroI | TCCGGA | 1 cut(s) | 1513 |
| MscI | TGGCCA | 1 cut(s) | 1443 |
| MseI | TTAA | 9 cut(s) | 690, 702, 855, 1170, 1227, 1380, 1614, 1686, 1800 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1515 |
| Msp20I | TGGCCA | 1 cut(s) | 1443 |
| MspI | CCGG | 4 cut(s) | 319, 884, 1409, 1514 |
| MspR9I | CCNGG | 2 cut(s) | 305, 319 |
| Mva1269I | GAATGC | 1 cut(s) | 1255 |
| MvaI | CCWGG | 1 cut(s) | 305 |
| MvnI | CGCG | 1 cut(s) | 445 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 341, 524, 921, 1259, 1555 |
| NciI | CCSGG | 1 cut(s) | 319 |
| NdeII | GATC | 5 cut(s) | 448, 849, 1039, 1621, 1780 |
| NlaIII | CATG | 4 cut(s) | 595, 812, 1127, 1465 |
| NlaIV | GGNNCC | 1 cut(s) | 323 |
| NmuCI | GTSAC | 2 cut(s) | 997, 1522 |
| NsiI | ATGCAT | 1 cut(s) | 1129 |
| NspI | RCATGY | 1 cut(s) | 595 |
| PctI | GAATGC | 1 cut(s) | 1255 |
| PfeI | GAWTC | 2 cut(s) | 887, 1120 |
| PflFI | GACNNNGTC | 1 cut(s) | 1099 |
| PkrI | GCNGC | 1 cut(s) | 470 |
| PshBI | ATTAAT | 1 cut(s) | 702 |
| Psp6I | CCWGG | 1 cut(s) | 303 |
| PspGI | CCWGG | 1 cut(s) | 303 |
| PspN4I | GGNNCC | 1 cut(s) | 323 |
| PspPI | GGNCC | 4 cut(s) | 235, 343, 1411, 1591 |
| PsyI | GACNNNGTC | 1 cut(s) | 1099 |
| RsaI | GTAC | 2 cut(s) | 685, 1794 |
| RsaNI | GTAC | 2 cut(s) | 684, 1793 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1515 |
| SalI | GTCGAC | 1 cut(s) | 290 |
| SaqAI | TTAA | 9 cut(s) | 690, 702, 855, 1170, 1227, 1380, 1614, 1686, 1800 |
| SatI | GCNGC | 1 cut(s) | 469 |
| Sau3AI | GATC | 5 cut(s) | 448, 849, 1039, 1621, 1780 |
| Sau96I | GGNCC | 4 cut(s) | 235, 343, 1411, 1591 |
| ScaI | AGTACT | 1 cut(s) | 1794 |
| ScrFI | CCNGG | 2 cut(s) | 305, 319 |
| SduI | GDGCHC | 1 cut(s) | 844 |
| SfaNI | GCATC | 2 cut(s) | 480, 1669 |
| SinI | GGWCC | 2 cut(s) | 1411, 1591 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1515 |
| Sse9I | AATT | 9 cut(s) | 275, 611, 670, 804, 975, 1111, 1206, 1224, 1644 |
| SsiI | CCGC | 8 cut(s) | 87, 145, 301, 346, 366, 445, 915, 1650 |
| StyD4I | CCNGG | 2 cut(s) | 303, 317 |
| TaaI | ACNGT | 4 cut(s) | 802, 1099, 1448, 1457 |
| TaiI | ACGT | 2 cut(s) | 584, 689 |
| TaqI | TCGA | 3 cut(s) | 291, 674, 1295 |
| TaqII | GACCGA | 1 cut(s) | 1108 |
| TasI | AATT | 9 cut(s) | 275, 611, 670, 804, 975, 1111, 1206, 1224, 1644 |
| TatI | WGTACW | 1 cut(s) | 1792 |
| TfiI | GAWTC | 2 cut(s) | 887, 1120 |
| Tru1I | TTAA | 9 cut(s) | 690, 702, 855, 1170, 1227, 1380, 1614, 1686, 1800 |
| Tru9I | TTAA | 9 cut(s) | 690, 702, 855, 1170, 1227, 1380, 1614, 1686, 1800 |
| TscAI | CASTG | 4 cut(s) | 185, 438, 954, 1451 |
| TseFI | GTSAC | 2 cut(s) | 997, 1522 |
| TseI | GCWGC | 1 cut(s) | 468 |
| Tsp45I | GTSAC | 2 cut(s) | 997, 1522 |
| TspGWI | ACGGA | 1 cut(s) | 638 |
| TspRI | CASTG | 4 cut(s) | 185, 438, 954, 1451 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1099 |
| VpaK11BI | GGWCC | 2 cut(s) | 1411, 1591 |
| VspI | ATTAAT | 1 cut(s) | 702 |
| XapI | RAATTY | 2 cut(s) | 275, 670 |
| XceI | RCATGY | 1 cut(s) | 595 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 337 |
| XmiI | GTMKAC | 1 cut(s) | 291 |
| ZrmI | AGTACT | 1 cut(s) | 1794 |
| Zsp2I | ATGCAT | 1 cut(s) | 1129 |