Prupe.8G019300_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
1781003 .. 1786537
5535 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G019300.1

Sequence Viewer

Length: 1821 bp
ATGAAACCCCACAAACTCCTCAACCCTCAGACCCTAAAACCCTCCAAGCTCAGACCCATTTTCCTCACAAACCACGCTCCCTCCTCCGCACCTTTCTCTTCACTCACTCATCCAGAAAACCCCACAGACCCTCCACCAATAACCCGCCACTCTCTACTCAAAACCATCCAATCTTCTCAGTGGCATTTCATCAAACACCTTTCGCCCAACCTTTCCCCCTCTCTAATCTCCGAGGCCCTCTTTGAACTCCAAAAAAGCCCTCAACTTGTCCTTGAATTCATCTCCAATGTCGACTTTCACCGCCTGGATATCCAAACCCGGTGCCTCGCCATCGCCATTGTGGCCCGCCAGTCTTCCCCACAACCCGCTTTAGAACTCTTGAAGCAAGTCGTTGGTAGTGGCATTGCTACAATCAGAGAGGTTTTCAATCCACTGGCACTCTCGCGGGATCGTTTGAGTGTAAATAGCAGCATCATTTTTGATTTGTTGCTAAGGGCTTGTTGTGAAATGAAGAAGGCCGACGAGGCTGTTGACTGCTTCTACTTGATGGTAGATAAAGGTTTTATGCCTAAGACTGAGACGTGCAATGACATGCTGAGTTTGTTCTTGAAATTGAACCAAACGGAGAGAGTGTGGGTTTTGTATGCTGAGATGTTTAGGTTGAAGATAAATTCGAGTGTTTGTACGTTTAACATAATGATTAATGTGTTGTGTAAAGAAGGGAAGCTGAAGAAGGCAAATGAGTTTGTTGGGTTTATGGAGAGTTCAGGCACTAAGCCTAATGTTGTAACTTACAATACGGTAATTCATGGGTTTTGTTCAAGAGGGAGAGTGGGAAGGGCTCAAATGATCTTTAATGCTATGAAAGGTAAAGGCGTTGAGCCGGATTCCTACACTTATGGTTCGCTTATTAGCGGGATGTGCAAGGATAGAAGACTTCAGGAAGCAGTGGGGCTTTTCAATAAAATGCTGGAAATTGGGCTACTTCCAAGTGCTGTGACTTACAACACCTTGATTGATGGTTATTGCAACGAAGGTGATCTGGACAAGGCTTTCAGTTATAGAGATGAGATGGTGAAGAAGGGTATAAGACCGACTGTGTCAACTTACAATTTGTTGATTCATGCATTGTTTATGGAAGGTAGGATGGTTGAAGCTTATGAGATGGTTAAAGAAATGGAAGAGAAGGGAGTGGTTTCTAATGGAATTACATATAACATCCTAATTAACGGCTATTGCAGAAGTGGGAATGCAAAGAAAGCCTTTAGCCTTCTTGATGAAATGTTGAGTAAATCGATAAAGCCTACTAAGGTAACTTATACATCACTTATGTATGTTTTGAGTAAAAACAAAAGAATGAAGGAGGCAGATGACTTGTTTAAGAAGATATTGACAAAGGGTGTTCTGCCGGACCTTGTGATGTTCAATGCCTTGATTGATGGCCACTGTGCTAACGGTAACATGGAGCGTGCATTTGCACTTTTGGGGGAGATGGATAAGATGAAGGTTCATCCGGATGAAGTGACTTACAATACTCTAATGCAAGGGCGTTGCAGGCAAGGGAAAGTTGAGGAAGCCCGTCAACTTCTGGACCAGATGAAGAGAAGGGGGATTAAACCTGATCACATTAGTTACAATACCCTAATTAGCGGTTATAGTAAAAGAGGTGATTTGAAGGATGCCTTTAAAGTTCGGGACGAGATGTTGAGCATAGGTTTCAATCCTACCCTTCTAACTTACAATGCCCTTATACAAGGTCTATCCAAAACCCAAGAAGGTGATCTTGCTGAAGTACTCCTTAAAGAAATGAGGTATCAATGA

Protein Analysis

607

Amino Acids

68.41

Weight (kDa)

9.06

Isoelectric Point (pI)

30.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 321
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 445
AccIII TCCGGA 1 cut(s) 1513
AciI CCGC 8 cut(s) 87, 145, 301, 346, 366, 445, 915, 1650
AclWI GGATC 1 cut(s) 456
AcoI YGGCCR 1 cut(s) 1441
AcsI RAATTY 2 cut(s) 275, 670
AcuI CTGAAG 3 cut(s) 749, 923, 1809
AfaI GTAC 2 cut(s) 685, 1794
AjiI CACGTC 1 cut(s) 582
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 3 cut(s) 49, 727, 1157
AluI AGCT 3 cut(s) 49, 727, 1157
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 1 cut(s) 456
Aor13HI TCCGGA 1 cut(s) 1513
AoxI GGCC 4 cut(s) 234, 342, 516, 1441
ApeKI GCWGC 1 cut(s) 468
ApoI RAATTY 2 cut(s) 275, 670
AseI ATTAAT 1 cut(s) 702
AspS9I GGNCC 4 cut(s) 235, 343, 1411, 1591
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 5 cut(s) 290, 1049, 1087, 1679, 1790
AvaII GGWCC 2 cut(s) 1411, 1591
BalI TGGCCA 1 cut(s) 1443
BanI GGYRCC 1 cut(s) 321
BanII GRGCYC 1 cut(s) 844
BbsI GAAGAC 2 cut(s) 345, 940
BbvI GCAGC 1 cut(s) 480
BccI CCATC 9 cut(s) 173, 338, 541, 1013, 1066, 1141, 1159, 1433, 1486
BceAI ACGGC 1 cut(s) 1246
BciT130I CCWGG 1 cut(s) 305
BclI TGATCA 1 cut(s) 1621
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 572
BglI GCCNNNNNGGC 2 cut(s) 341, 524
BisI GCNGC 1 cut(s) 469
BlsI GCNGC 1 cut(s) 470
BmcAI AGTACT 1 cut(s) 1794
Bme1390I CCNGG 2 cut(s) 305, 319
Bme18I GGWCC 2 cut(s) 1411, 1591
BmgBI CACGTC 1 cut(s) 582
BmgT120I GGNCC 4 cut(s) 235, 343, 1411, 1591
BmiI GGNNCC 1 cut(s) 323
BmrFI CCNGG 2 cut(s) 305, 319
BmsI GCATC 2 cut(s) 480, 1669
BpiI GAAGAC 2 cut(s) 345, 940
Bpu10I CCTNAGC 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 319
Bsa29I ATCGAT 1 cut(s) 1295
BsaJI CCNNGG 1 cut(s) 231
BsaWI WCCGGW 1 cut(s) 1513
BsaXI ACNNNNNCTCC 6 cut(s) 65, 95, 115, 145, 617, 647
Bse1I ACTGG 2 cut(s) 349, 438
Bse3DI GCAATG 2 cut(s) 402, 592
BseAI TCCGGA 1 cut(s) 1513
BseBI CCWGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 1295
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 8 cut(s) 109, 165, 924, 1152, 1218, 1510, 1522, 1684
BseMI GCAATG 2 cut(s) 402, 592
BseMII CTCAG 6 cut(s) 41, 64, 191, 567, 587, 639
BseNI ACTGG 2 cut(s) 349, 438
BseRI GAGGAG 2 cut(s) 8, 73
BseXI GCAGC 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 445
BshFI GGCC 4 cut(s) 236, 344, 518, 1443
BshNI GGYRCC 1 cut(s) 321
BshVI ATCGAT 1 cut(s) 1295
BsiSI CCGG 4 cut(s) 319, 884, 1409, 1514
BslFI GGGAC 1 cut(s) 1709
BsmAI GTCTC 1 cut(s) 572
BsmBI CGTCTC 1 cut(s) 572
BsmFI GGGAC 1 cut(s) 1709
BsmI GAATGC 1 cut(s) 1255
BsnI GGCC 4 cut(s) 236, 344, 518, 1443
Bsp1286I GDGCHC 1 cut(s) 844
Bsp13I TCCGGA 1 cut(s) 1513
Bsp143I GATC 5 cut(s) 448, 849, 1039, 1621, 1780
BspACI CCGC 8 cut(s) 87, 145, 301, 346, 366, 445, 915, 1650
BspANI GGCC 4 cut(s) 236, 344, 518, 1443
BspCNI CTCAG 6 cut(s) 40, 63, 190, 568, 588, 640
BspDI ATCGAT 1 cut(s) 1295
BspEI TCCGGA 1 cut(s) 1513
BspFNI CGCG 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 323
BspPI GGATC 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 321
BsrDI GCAATG 2 cut(s) 402, 592
BsrI ACTGG 2 cut(s) 349, 438
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 5 cut(s) 448, 849, 1039, 1621, 1780
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 4 cut(s) 802, 1099, 1448, 1457
Bst6I CTCTTC 3 cut(s) 103, 1176, 1595
BstC8I GCNNGC 3 cut(s) 346, 1470, 1556
BstF5I GGATG 8 cut(s) 109, 165, 924, 1152, 1218, 1510, 1522, 1684
BstFNI CGCG 1 cut(s) 445
BstKTI GATC 5 cut(s) 451, 852, 1042, 1624, 1783
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 5 cut(s) 448, 849, 1039, 1621, 1780
BstMWI GCNNNNNNNGC 5 cut(s) 341, 524, 921, 1259, 1555
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 595
BstSCI CCNGG 2 cut(s) 303, 317
BstUI CGCG 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 480
BstV2I GAAGAC 2 cut(s) 345, 940
Bsu15I ATCGAT 1 cut(s) 1295
BsuRI GGCC 4 cut(s) 236, 344, 518, 1443
BsuTUI ATCGAT 1 cut(s) 1295
BtgZI GCGATG 1 cut(s) 316
BtrI CACGTC 1 cut(s) 582
BtsCI GGATG 8 cut(s) 109, 165, 924, 1152, 1218, 1510, 1522, 1684
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 4 cut(s) 185, 431, 954, 1444
Cac8I GCNNGC 3 cut(s) 346, 1470, 1556
Cfr13I GGNCC 4 cut(s) 235, 343, 1411, 1591
ClaI ATCGAT 1 cut(s) 1295
Csp6I GTAC 2 cut(s) 684, 1793
CviAII CATG 4 cut(s) 592, 809, 1124, 1462
CviQI GTAC 2 cut(s) 684, 1793
DpnI GATC 5 cut(s) 450, 851, 1041, 1623, 1782
DpnII GATC 5 cut(s) 448, 849, 1039, 1621, 1780
DraI TTTAAA 1 cut(s) 1687
EaeI YGGCCR 1 cut(s) 1441
Eam1104I CTCTTC 3 cut(s) 103, 1176, 1595
EarI CTCTTC 3 cut(s) 103, 1176, 1595
Eco24I GRGCYC 1 cut(s) 844
Eco32I GATATC 1 cut(s) 310
Eco47I GGWCC 2 cut(s) 1411, 1591
Eco57I CTGAAG 3 cut(s) 749, 923, 1809
EcoO109I RGGNCCY 1 cut(s) 235
EcoRI GAATTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 303
EcoRV GATATC 1 cut(s) 310
EcoT22I ATGCAT 1 cut(s) 1129
EcoT38I GRGCYC 1 cut(s) 844
Esp3I CGTCTC 1 cut(s) 572
FaeI CATG 4 cut(s) 595, 812, 1127, 1465
FalI AAGNNNNNCTT 8 cut(s) 1247, 1279, 1667, 1699, 1767, 1799, 1782, 1814
FaqI GGGAC 1 cut(s) 1709
FatI CATG 4 cut(s) 591, 808, 1123, 1461
FauI CCCGC 5 cut(s) 152, 353, 373, 438, 908
FbaI TGATCA 1 cut(s) 1621
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 1 cut(s) 469
FokI GGATG 8 cut(s) 96, 152, 931, 1159, 1205, 1497, 1529, 1691
FriOI GRGCYC 1 cut(s) 844
Fsp4HI GCNGC 1 cut(s) 469
GluI GCNGC 1 cut(s) 469
HaeIII GGCC 4 cut(s) 236, 344, 518, 1443
HapII CCGG 4 cut(s) 319, 884, 1409, 1514
Hin1II CATG 4 cut(s) 595, 812, 1127, 1465
HincII GTYRAC 4 cut(s) 292, 532, 1104, 1583
HindII GTYRAC 4 cut(s) 292, 532, 1104, 1583
HindIII AAGCTT 1 cut(s) 1155
HinfI GANTC 2 cut(s) 887, 1120
HpaII CCGG 4 cut(s) 319, 884, 1409, 1514
HphI GGTGA 5 cut(s) 290, 1049, 1087, 1679, 1790
Hpy166II GTNNAC 4 cut(s) 292, 532, 1104, 1583
Hpy188I TCNGA 4 cut(s) 30, 53, 232, 416
Hpy8I GTNNAC 4 cut(s) 292, 532, 1104, 1583
Hpy99I CGWCG 1 cut(s) 524
HpyCH4III ACNGT 4 cut(s) 802, 1099, 1448, 1457
HpyCH4IV ACGT 2 cut(s) 581, 686
HpyF10VI GCNNNNNNNGC 5 cut(s) 341, 524, 921, 1259, 1555
HpySE526I ACGT 2 cut(s) 581, 686
Hsp92II CATG 4 cut(s) 595, 812, 1127, 1465
Kpn2I TCCGGA 1 cut(s) 1513
Ksp22I TGATCA 1 cut(s) 1621
Kzo9I GATC 5 cut(s) 448, 849, 1039, 1621, 1780
LmnI GCTCC 2 cut(s) 82, 1465
Lsp1109I GCAGC 1 cut(s) 480
LweI GCATC 2 cut(s) 480, 1669
MaeII ACGT 2 cut(s) 581, 686
MaeIII GTNAC 6 cut(s) 787, 997, 1312, 1457, 1522, 1631
MalI GATC 5 cut(s) 450, 851, 1041, 1623, 1782
MboI GATC 5 cut(s) 448, 849, 1039, 1621, 1780
MhlI GDGCHC 1 cut(s) 844
MlsI TGGCCA 1 cut(s) 1443
MluCI AATT 9 cut(s) 275, 611, 670, 804, 975, 1111, 1206, 1224, 1644
MluNI TGGCCA 1 cut(s) 1443
Mox20I TGGCCA 1 cut(s) 1443
Mph1103I ATGCAT 1 cut(s) 1129
MroI TCCGGA 1 cut(s) 1513
MscI TGGCCA 1 cut(s) 1443
MseI TTAA 9 cut(s) 690, 702, 855, 1170, 1227, 1380, 1614, 1686, 1800
MslI CAYNNNNRTG 1 cut(s) 1515
Msp20I TGGCCA 1 cut(s) 1443
MspI CCGG 4 cut(s) 319, 884, 1409, 1514
MspR9I CCNGG 2 cut(s) 305, 319
Mva1269I GAATGC 1 cut(s) 1255
MvaI CCWGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 445
MwoI GCNNNNNNNGC 5 cut(s) 341, 524, 921, 1259, 1555
NciI CCSGG 1 cut(s) 319
NdeII GATC 5 cut(s) 448, 849, 1039, 1621, 1780
NlaIII CATG 4 cut(s) 595, 812, 1127, 1465
NlaIV GGNNCC 1 cut(s) 323
NmuCI GTSAC 2 cut(s) 997, 1522
NsiI ATGCAT 1 cut(s) 1129
NspI RCATGY 1 cut(s) 595
PctI GAATGC 1 cut(s) 1255
PfeI GAWTC 2 cut(s) 887, 1120
PflFI GACNNNGTC 1 cut(s) 1099
PkrI GCNGC 1 cut(s) 470
PshBI ATTAAT 1 cut(s) 702
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 1 cut(s) 323
PspPI GGNCC 4 cut(s) 235, 343, 1411, 1591
PsyI GACNNNGTC 1 cut(s) 1099
RsaI GTAC 2 cut(s) 685, 1794
RsaNI GTAC 2 cut(s) 684, 1793
RseI CAYNNNNRTG 1 cut(s) 1515
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 9 cut(s) 690, 702, 855, 1170, 1227, 1380, 1614, 1686, 1800
SatI GCNGC 1 cut(s) 469
Sau3AI GATC 5 cut(s) 448, 849, 1039, 1621, 1780
Sau96I GGNCC 4 cut(s) 235, 343, 1411, 1591
ScaI AGTACT 1 cut(s) 1794
ScrFI CCNGG 2 cut(s) 305, 319
SduI GDGCHC 1 cut(s) 844
SfaNI GCATC 2 cut(s) 480, 1669
SinI GGWCC 2 cut(s) 1411, 1591
SmiMI CAYNNNNRTG 1 cut(s) 1515
Sse9I AATT 9 cut(s) 275, 611, 670, 804, 975, 1111, 1206, 1224, 1644
SsiI CCGC 8 cut(s) 87, 145, 301, 346, 366, 445, 915, 1650
StyD4I CCNGG 2 cut(s) 303, 317
TaaI ACNGT 4 cut(s) 802, 1099, 1448, 1457
TaiI ACGT 2 cut(s) 584, 689
TaqI TCGA 3 cut(s) 291, 674, 1295
TaqII GACCGA 1 cut(s) 1108
TasI AATT 9 cut(s) 275, 611, 670, 804, 975, 1111, 1206, 1224, 1644
TatI WGTACW 1 cut(s) 1792
TfiI GAWTC 2 cut(s) 887, 1120
Tru1I TTAA 9 cut(s) 690, 702, 855, 1170, 1227, 1380, 1614, 1686, 1800
Tru9I TTAA 9 cut(s) 690, 702, 855, 1170, 1227, 1380, 1614, 1686, 1800
TscAI CASTG 4 cut(s) 185, 438, 954, 1451
TseFI GTSAC 2 cut(s) 997, 1522
TseI GCWGC 1 cut(s) 468
Tsp45I GTSAC 2 cut(s) 997, 1522
TspGWI ACGGA 1 cut(s) 638
TspRI CASTG 4 cut(s) 185, 438, 954, 1451
Tth111I GACNNNGTC 1 cut(s) 1099
VpaK11BI GGWCC 2 cut(s) 1411, 1591
VspI ATTAAT 1 cut(s) 702
XapI RAATTY 2 cut(s) 275, 670
XceI RCATGY 1 cut(s) 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 291
ZrmI AGTACT 1 cut(s) 1794
Zsp2I ATGCAT 1 cut(s) 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.