Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

78958973 .. 78960198

Gene Structure 1226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0591800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGATGATGATGGTCCCGACCTCCGAGGAAGATATGGTGTTCGCCGTCGTCCGAACGCCTCCGAGTAAGCCTGGGCCGACGCCAGCACTGGGGTTGCAGACAAGCATGTTAAAAGACTCCGTGACGAAGCCCTACAATGTGTGGAAGATGCCAGATGAGATAGTTTTCTGGAAAGACTGGAATATTGGGGTCTCGGACCAGAGGCTATTTCCTTTCATATCTAATGTTTTAAAAGAACATAAAAGCTTGGCAAAGGACTCTTTCAAGTTCCTAACTAAGTACTTGGCAACATTTTCTGGCGAAGACGCACATGTTTTGAGGCAAGCGAAGGATGAGGCTGTTCGCACAATTGTGGAATTTGTGAAGACACCAGGCATGTTTCAGTGTGATTTTTTAGATATGCCTGCTGTAGCACAGTTGGAGAAGGATGCTAAACATGCATCGGCATATCAGCTTTTGAAGCAAATATTACGCTTGCTTCAAAGCTATGGTCTGGTCCATGAAGATTGTATTACTAAGATGAGGTTGATTTCATTGGTGGATCTTGGCTCTGATGAATCTGGACGAGTTCCTTATAGTCTCATCAGAGATACACTGCAGATTAATGATGATGAAGTGGAACCTTGGGTGCGTGTGTTCGGCAAGGAGCAATGGCATACCCTTAAAACAAAGCTAGCATGTTGGAGGGGCAATATTTCACATGTCATCAGCACTGTTCAAGCTAACAGGCCAGCTGAAGATGGTGCCCAGGCAGCTCAAGACTTGGTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

257

Amino Acids

29.18

Weight (kDa)

6.32

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3m_C_helix	PF18005	211 - 239	1.1e-10	eIF3 subunit M, C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	743
AclWI	GGATC	1 cut(s)	549
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	756
AcyI	GRCGYC	1 cut(s)	80
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	89
AflIII	ACRYGT	2 cut(s)	310, 700
AgsI	TTSAA	4 cut(s)	265, 460, 482, 719
AjnI	CCWGG	3 cut(s)	70, 370, 747
AleI	CACNNNNGTG	1 cut(s)	350
AluBI	AGCT	7 cut(s)	246, 454, 486, 673, 722, 734, 755
AluI	AGCT	7 cut(s)	246, 454, 486, 673, 722, 734, 755
Alw26I	GTCTC	2 cut(s)	196, 584
AlwI	GGATC	1 cut(s)	549
AoxI	GGCC	2 cut(s)	74, 728
ApeKI	GCWGC	1 cut(s)	752
ApoI	RAATTY	1 cut(s)	356
ArsI	GACNNNNNNTTYG	2 cut(s)	475, 507
AseI	ATTAAT	1 cut(s)	603
AspS9I	GGNCC	4 cut(s)	13, 74, 196, 496
AsuNHI	GCTAGC	1 cut(s)	673
AvaII	GGWCC	3 cut(s)	13, 196, 496
BaeGI	GKGCMC	1 cut(s)	748
BanI	GGYRCC	1 cut(s)	743
BbsI	GAAGAC	2 cut(s)	309, 371
BbvI	GCAGC	1 cut(s)	764
BccI	CCATC	2 cut(s)	4, 734
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	72, 372, 749
BcoDI	GTCTC	2 cut(s)	196, 584
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	2 cut(s)	408, 596
BisI	GCNGC	1 cut(s)	753
BlsI	GCNGC	1 cut(s)	754
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	3 cut(s)	72, 372, 749
Bme18I	GGWCC	3 cut(s)	13, 196, 496
BmgT120I	GGNCC	4 cut(s)	13, 74, 196, 496
BmiI	GGNNCC	3 cut(s)	15, 621, 745
BmrFI	CCNGG	3 cut(s)	72, 372, 749
BmrI	ACTGGG	1 cut(s)	98
BmsI	GCATC	3 cut(s)	138, 418, 449
BmtI	GCTAGC	1 cut(s)	677
BmuI	ACTGGG	1 cut(s)	98
BpiI	GAAGAC	2 cut(s)	309, 371
BpuEI	CTTGAG	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	80
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	4 cut(s)	24, 71, 623, 747
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	93, 182
Bse3DI	GCAATG	1 cut(s)	656
BseBI	CCWGG	3 cut(s)	72, 372, 749
BseDI	CCNNGG	4 cut(s)	24, 71, 623, 747
BseGI	GGATG	2 cut(s)	337, 433
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseMI	GCAATG	1 cut(s)	656
BseNI	ACTGG	2 cut(s)	93, 182
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	1 cut(s)	764
BshFI	GGCC	2 cut(s)	76, 730
BshNI	GGYRCC	1 cut(s)	743
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmAI	GTCTC	2 cut(s)	196, 584
BsnI	GGCC	2 cut(s)	76, 730
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	1 cut(s)	541
BspANI	GGCC	2 cut(s)	76, 730
BspLI	GGNNCC	3 cut(s)	15, 621, 745
BspMAI	CTGCAG	1 cut(s)	600
BspOI	GCTAGC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	549
BspT107I	GGYRCC	1 cut(s)	743
BspTNI	GGTCTC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	656
BsrI	ACTGG	2 cut(s)	93, 182
BssECI	CCNNGG	4 cut(s)	24, 71, 623, 747
BssMI	GATC	1 cut(s)	541
BssNI	GRCGYC	1 cut(s)	80
BssT1I	CCWWGG	1 cut(s)	623
Bst2UI	CCWGG	3 cut(s)	72, 372, 749
Bst4CI	ACNGT	2 cut(s)	417, 715
BstACI	GRCGYC	1 cut(s)	80
BstC8I	GCNNGC	6 cut(s)	84, 324, 405, 476, 675, 732
BstDEI	CTNAG	2 cut(s)	276, 516
BstF5I	GGATG	2 cut(s)	337, 433
BstKTI	GATC	1 cut(s)	544
BstMAI	GTCTC	2 cut(s)	196, 584
BstMBI	GATC	1 cut(s)	541
BstMWI	GCNNNNNNNGC	3 cut(s)	437, 460, 752
BstNI	CCWGG	3 cut(s)	72, 372, 749
BstNSI	RCATGY	6 cut(s)	109, 314, 379, 440, 681, 704
BstSCI	CCNGG	3 cut(s)	70, 370, 747
BstSFI	CTRYAG	2 cut(s)	408, 596
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	1 cut(s)	764
BstV2I	GAAGAC	2 cut(s)	309, 371
BstX2I	RGATCY	1 cut(s)	541
BstYI	RGATCY	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	76, 730
BtsCI	GGATG	2 cut(s)	337, 433
BtsI	GCAGTG	1 cut(s)	593
BtsIMutI	CAGTG	4 cut(s)	86, 389, 593, 711
Cac8I	GCNNGC	6 cut(s)	84, 324, 405, 476, 675, 732
Cfr13I	GGNCC	4 cut(s)	13, 74, 196, 496
CseI	GACGC	2 cut(s)	88, 314
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	7 cut(s)	106, 311, 376, 437, 500, 678, 701
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	276, 516
DpnI	GATC	1 cut(s)	543
DpnII	GATC	1 cut(s)	541
DraI	TTTAAA	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	623
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	3 cut(s)	13, 196, 496
Eco57I	CTGAAG	1 cut(s)	756
EcoRII	CCWGG	3 cut(s)	70, 370, 747
EcoT14I	CCWWGG	1 cut(s)	623
EcoT22I	ATGCAT	1 cut(s)	442
ErhI	CCWWGG	1 cut(s)	623
FaeI	CATG	7 cut(s)	109, 314, 379, 440, 503, 681, 704
FatI	CATG	7 cut(s)	105, 310, 375, 436, 499, 677, 700
Fnu4HI	GCNGC	1 cut(s)	753
FokI	GGATG	2 cut(s)	344, 440
Fsp4HI	GCNGC	1 cut(s)	753
FspBI	CTAG	1 cut(s)	674
GluI	GCNGC	1 cut(s)	753
HaeIII	GGCC	2 cut(s)	76, 730
HgaI	GACGC	2 cut(s)	88, 314
Hin1I	GRCGYC	1 cut(s)	80
Hin1II	CATG	7 cut(s)	109, 314, 379, 440, 503, 681, 704
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	3 cut(s)	116, 257, 557
Hpy188I	TCNGA	6 cut(s)	25, 53, 63, 196, 553, 587
Hpy188III	TCNNGA	4 cut(s)	16, 169, 561, 758
Hpy99I	CGWCG	2 cut(s)	50, 82
HpyAV	CCTTC	2 cut(s)	322, 418
HpyCH4III	ACNGT	2 cut(s)	417, 715
HpyCH4V	TGCA	3 cut(s)	97, 440, 598
HpyF10VI	GCNNNNNNNGC	3 cut(s)	437, 460, 752
HpyF3I	CTNAG	2 cut(s)	276, 516
Hsp92I	GRCGYC	1 cut(s)	80
Hsp92II	CATG	7 cut(s)	109, 314, 379, 440, 503, 681, 704
Kzo9I	GATC	1 cut(s)	541
LmnI	GCTCC	1 cut(s)	646
Lsp1109I	GCAGC	1 cut(s)	764
LweI	GCATC	3 cut(s)	138, 418, 449
MaeI	CTAG	1 cut(s)	674
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	543
MboI	GATC	1 cut(s)	541
MboII	GAAGA	6 cut(s)	41, 157, 314, 376, 515, 749
MfeI	CAATTG	1 cut(s)	348
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	1 cut(s)	748
MluCI	AATT	2 cut(s)	348, 356
MlyI	GAGTC	2 cut(s)	110, 251
MmeI	TCCRAC	2 cut(s)	399, 662
MnlI	CCTC	8 cut(s)	19, 31, 69, 195, 312, 328, 516, 678
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	4 cut(s)	110, 230, 603, 663
MslI	CAYNNNNRTG	1 cut(s)	350
MspA1I	CMGCKG	1 cut(s)	734
MspR9I	CCNGG	3 cut(s)	72, 372, 749
MunI	CAATTG	1 cut(s)	348
MvaI	CCWGG	3 cut(s)	72, 372, 749
MwoI	GCNNNNNNNGC	3 cut(s)	437, 460, 752
NdeII	GATC	1 cut(s)	541
NheI	GCTAGC	1 cut(s)	673
NlaIII	CATG	7 cut(s)	109, 314, 379, 440, 503, 681, 704
NlaIV	GGNNCC	3 cut(s)	15, 621, 745
NmuCI	GTSAC	1 cut(s)	121
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	6 cut(s)	109, 314, 379, 440, 681, 704
OliI	CACNNNNGTG	1 cut(s)	350
PciI	ACATGT	2 cut(s)	310, 700
PfeI	GAWTC	1 cut(s)	557
PkrI	GCNGC	1 cut(s)	754
PleI	GAGTC	2 cut(s)	110, 251
PpsI	GAGTC	2 cut(s)	110, 251
PscI	ACATGT	2 cut(s)	310, 700
PshBI	ATTAAT	1 cut(s)	603
Psp6I	CCWGG	3 cut(s)	70, 370, 747
PspGI	CCWGG	3 cut(s)	70, 370, 747
PspN4I	GGNNCC	3 cut(s)	15, 621, 745
PspPI	GGNCC	4 cut(s)	13, 74, 196, 496
PstI	CTGCAG	1 cut(s)	600
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	734
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	350
SaqAI	TTAA	4 cut(s)	110, 230, 603, 663
SatI	GCNGC	1 cut(s)	753
Sau3AI	GATC	1 cut(s)	541
Sau96I	GGNCC	4 cut(s)	13, 74, 196, 496
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	2 cut(s)	110, 251
ScrFI	CCNGG	3 cut(s)	72, 372, 749
SduI	GDGCHC	1 cut(s)	748
SfaNI	GCATC	3 cut(s)	138, 418, 449
SfcI	CTRYAG	2 cut(s)	408, 596
SinI	GGWCC	3 cut(s)	13, 196, 496
SmiMI	CAYNNNNRTG	1 cut(s)	350
SmlI	CTYRAG	1 cut(s)	756
SmoI	CTYRAG	1 cut(s)	756
Sse9I	AATT	2 cut(s)	348, 356
SspI	AATATT	3 cut(s)	184, 468, 694
SspMI	CTAG	1 cut(s)	674
StyD4I	CCNGG	3 cut(s)	70, 370, 747
StyI	CCWWGG	1 cut(s)	623
TaaI	ACNGT	2 cut(s)	417, 715
TasI	AATT	2 cut(s)	348, 356
TatI	WGTACW	1 cut(s)	279
TfiI	GAWTC	1 cut(s)	557
Tru1I	TTAA	4 cut(s)	110, 230, 603, 663
Tru9I	TTAA	4 cut(s)	110, 230, 603, 663
TscAI	CASTG	4 cut(s)	93, 389, 600, 718
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	1 cut(s)	752
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	5 cut(s)	205, 516, 522, 570, 627
TspGWI	ACGGA	1 cut(s)	109
TspRI	CASTG	4 cut(s)	93, 389, 600, 718
VpaK11BI	GGWCC	3 cut(s)	13, 196, 496
VspI	ATTAAT	1 cut(s)	603
XapI	RAATTY	1 cut(s)	356
XceI	RCATGY	6 cut(s)	109, 314, 379, 440, 681, 704
XspI	CTAG	1 cut(s)	674
ZrmI	AGTACT	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.