Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

15634815 .. 15635543

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23376

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACGAGTGGAAATGTTATGCCTAAGACTAAGACTTGTAATGAATTGTTGAGTTTGTTTTCGAAATTGAATCGAACCGAGAGGGCTTGGGTTTTGTATGCTGACATGTTTAGGTTAAAGATCAAGTCCAGTGTTTGTACTATTAACATAATGATTAATGTGTTGTGTAAAGAAGGCAAGTTGAACAAGGCAAAGGAGTTTCTTGGGTTTATGGAGATTTTGGGGATTAAGCCTACTGTTGTTACTTATAATACAATCATTCATGGGTTTTGTTTGAGAGGCAGAGTTGGAGGGGCTCAGATGATCTTTAGTGCTATGAAAGGGAGAGGAGTTCAGCCGGATTCTTACACGTATGGATTGCTTATTAGTGGGATGTGTAAGGAGAGAAGACTTGATGAAGCGTCTGGTCTTTTTGATAAAATGCTGGAAATTGGGCTGCTTCCGAGTGCTGTTACTTATAATACCCTGATTGATAAGGGTGATCTGGACAGGGCTTTTGGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCGACGGTGTCAAATTACAATTTGTTGATTCATGAATTGTTTATGGAAGCTAGGGAGAGTGAGGCTGATTGTATGGTTAGAGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGCTCAGCTCAGGTACCGATCGCATTCAATAGTATTGTTGAACTTGATTCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

242

Amino Acids

27.13

Weight (kDa)

6.75

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	8 - 57	4.3e-10	PPR repeat family
PPR_long	PF17177	24 - 118	3.8e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	32 - 88	5.2e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	43 - 72	1.4e-06	PPR repeat
PPR_2	PF13041	44 - 91	2.4e-14	PPR repeat family
PPR_1	PF12854	75 - 107	8e-12	PPR repeat
PPR_2	PF13041	78 - 127	5.5e-18	PPR repeat family
PPR	PF01535	81 - 111	2.4e-06	PPR repeat
PPR_3	PF13812	102 - 157	1.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	109 - 141	6.2e-12	PPR repeat
PPR	PF01535	116 - 146	2.3e-07	PPR repeat
PPR_2	PF13041	117 - 158	8.9e-11	PPR repeat family
PPR_3	PF13812	170 - 224	4.6e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	179 - 226	1.3e-10	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	249, 459
Acc65I	GGTACC	1 cut(s)	685
AccB1I	GGYRCC	1 cut(s)	685
AfaI	GTAC	2 cut(s)	139, 687
AflIII	ACRYGT	2 cut(s)	105, 348
AgsI	TTSAA	4 cut(s)	70, 184, 700, 713
AluBI	AGCT	2 cut(s)	584, 680
AluI	AGCT	2 cut(s)	584, 680
ApeKI	GCWGC	1 cut(s)	436
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AseI	ATTAAT	2 cut(s)	156, 669
Asp718I	GGTACC	1 cut(s)	685
AsuHPI	GGTGA	2 cut(s)	491, 529
AsuII	TTCGAA	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	685
BanII	GRGCYC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	423
BccI	CCATC	1 cut(s)	508
BfaI	CTAG	1 cut(s)	585
BisI	GCNGC	1 cut(s)	437
BlpI	GCTNAGC	1 cut(s)	676
BlsI	GCNGC	1 cut(s)	438
BmiI	GGNNCC	2 cut(s)	639, 687
BmsI	GCATC	1 cut(s)	634
BpiI	GAAGAC	1 cut(s)	394
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu1102I	GCTNAGC	1 cut(s)	676
Bpu14I	TTCGAA	1 cut(s)	62
BsaAI	YACGTR	2 cut(s)	351, 654
Bse1I	ACTGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	378
BseMII	CTCAG	3 cut(s)	311, 690, 695
BseNI	ACTGG	1 cut(s)	129
BseRI	GAGGAG	1 cut(s)	342
BseXI	GCAGC	1 cut(s)	423
Bsh1285I	CGRYCG	1 cut(s)	693
BshNI	GGYRCC	1 cut(s)	685
BsiEI	CGRYCG	1 cut(s)	693
BsiSI	CCGG	1 cut(s)	338
BsmI	GAATGC	1 cut(s)	695
Bsp119I	TTCGAA	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	120, 303, 481, 690
Bsp1720I	GCTNAGC	1 cut(s)	676
BspCNI	CTCAG	3 cut(s)	310, 689, 694
BspHI	TCATGA	1 cut(s)	565
BspLI	GGNNCC	2 cut(s)	639, 687
BspT104I	TTCGAA	1 cut(s)	62
BspT107I	GGYRCC	1 cut(s)	685
BsrI	ACTGG	1 cut(s)	129
BssMI	GATC	4 cut(s)	120, 303, 481, 690
Bst4CI	ACNGT	2 cut(s)	238, 541
Bst6I	CTCTTC	1 cut(s)	618
BstBAI	YACGTR	2 cut(s)	351, 654
BstBI	TTCGAA	1 cut(s)	62
BstDEI	CTNAG	5 cut(s)	24, 30, 297, 676, 681
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	4 cut(s)	123, 306, 484, 693
BstMBI	GATC	4 cut(s)	120, 303, 481, 690
BstMCI	CGRYCG	1 cut(s)	693
BstNSI	RCATGY	1 cut(s)	109
BstSNI	TACGTA	1 cut(s)	654
BstV1I	GCAGC	1 cut(s)	423
BstV2I	GAAGAC	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	136
CciI	TCATGA	1 cut(s)	565
CseI	GACGC	1 cut(s)	390
Csp6I	GTAC	2 cut(s)	138, 686
CviAII	CATG	3 cut(s)	106, 263, 566
CviQI	GTAC	2 cut(s)	138, 686
DdeI	CTNAG	5 cut(s)	24, 30, 297, 676, 681
DpnI	GATC	4 cut(s)	122, 305, 483, 692
DpnII	GATC	4 cut(s)	120, 303, 481, 690
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
Eco105I	TACGTA	1 cut(s)	654
Eco24I	GRGCYC	1 cut(s)	298
EcoT38I	GRGCYC	1 cut(s)	298
FaeI	CATG	3 cut(s)	109, 266, 569
FatI	CATG	3 cut(s)	105, 262, 565
Fnu4HI	GCNGC	1 cut(s)	437
FokI	GGATG	1 cut(s)	385
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	1 cut(s)	437
FspBI	CTAG	1 cut(s)	585
GluI	GCNGC	1 cut(s)	437
HapII	CCGG	1 cut(s)	338
HgaI	GACGC	1 cut(s)	390
Hin1II	CATG	3 cut(s)	109, 266, 569
HinfI	GANTC	4 cut(s)	70, 341, 562, 719
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	2 cut(s)	491, 529
Hpy188I	TCNGA	3 cut(s)	300, 444, 724
Hpy188III	TCNNGA	4 cut(s)	485, 566, 641, 664
Hpy99I	CGWCG	1 cut(s)	541
HpyAV	CCTTC	3 cut(s)	167, 517, 622
HpyCH4III	ACNGT	2 cut(s)	238, 541
HpyCH4IV	ACGT	2 cut(s)	350, 653
HpyF3I	CTNAG	5 cut(s)	24, 30, 297, 676, 681
HpySE526I	ACGT	2 cut(s)	350, 653
Hsp92II	CATG	3 cut(s)	109, 266, 569
KpnI	GGTACC	1 cut(s)	689
Kzo9I	GATC	4 cut(s)	120, 303, 481, 690
Lsp1109I	GCAGC	1 cut(s)	423
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	2 cut(s)	350, 653
MaeIII	GTNAC	2 cut(s)	241, 451
MalI	GATC	4 cut(s)	122, 305, 483, 692
MboI	GATC	4 cut(s)	120, 303, 481, 690
MboII	GAAGA	3 cut(s)	399, 532, 635
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	6 cut(s)	44, 65, 429, 547, 553, 569
MmeI	TCCRAC	1 cut(s)	268
MnlI	CCTC	5 cut(s)	75, 272, 284, 320, 589
MseI	TTAA	5 cut(s)	116, 144, 156, 228, 669
MspI	CCGG	1 cut(s)	338
Mva1269I	GAATGC	1 cut(s)	695
NdeII	GATC	4 cut(s)	120, 303, 481, 690
NlaIII	CATG	3 cut(s)	109, 266, 569
NlaIV	GGNNCC	2 cut(s)	639, 687
NspI	RCATGY	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	62
PagI	TCATGA	1 cut(s)	565
PciI	ACATGT	1 cut(s)	105
PctI	GAATGC	1 cut(s)	695
PfeI	GAWTC	4 cut(s)	70, 341, 562, 719
PflFI	GACNNNGTC	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	438
Ple19I	CGATCG	1 cut(s)	693
Ppu21I	YACGTR	2 cut(s)	351, 654
PscI	ACATGT	1 cut(s)	105
PshBI	ATTAAT	2 cut(s)	156, 669
PsiI	TTATAA	2 cut(s)	249, 459
PspN4I	GGNNCC	2 cut(s)	639, 687
PsyI	GACNNNGTC	1 cut(s)	541
PvuI	CGATCG	1 cut(s)	693
RsaI	GTAC	2 cut(s)	139, 687
RsaNI	GTAC	2 cut(s)	138, 686
SaqAI	TTAA	5 cut(s)	116, 144, 156, 228, 669
SatI	GCNGC	1 cut(s)	437
Sau3AI	GATC	4 cut(s)	120, 303, 481, 690
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	6 cut(s)	116, 353, 586, 656, 682, 687
SfaNI	GCATC	1 cut(s)	634
SfuI	TTCGAA	1 cut(s)	62
SnaBI	TACGTA	1 cut(s)	654
Sse9I	AATT	6 cut(s)	44, 65, 429, 547, 553, 569
SspMI	CTAG	1 cut(s)	585
TaaI	ACNGT	2 cut(s)	238, 541
TaiI	ACGT	2 cut(s)	353, 656
TaqI	TCGA	2 cut(s)	62, 73
TasI	AATT	6 cut(s)	44, 65, 429, 547, 553, 569
TatI	WGTACW	1 cut(s)	137
TfiI	GAWTC	4 cut(s)	70, 341, 562, 719
Tru1I	TTAA	5 cut(s)	116, 144, 156, 228, 669
Tru9I	TTAA	5 cut(s)	116, 144, 156, 228, 669
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	436
TspDTI	ATGAA	6 cut(s)	57, 251, 332, 411, 554, 582
TspRI	CASTG	1 cut(s)	136
Tth111I	GACNNNGTC	1 cut(s)	541
VspI	ATTAAT	2 cut(s)	156, 669
XceI	RCATGY	1 cut(s)	109
XspI	CTAG	1 cut(s)	585

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.