Rh7BG360300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000571
Physical Location & Seq
Reverse (-)
38075714 .. 38077017
1304 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG360300.1

Sequence Viewer

Length: 456 bp
ATGAACTTCTCAGAAACCCAAAGCGCGTCTCACAGGCCCGGTTGCATTTTTTTTCACTTATTCTTTTATTTTTGTTTTCTCACAGCTGCTTTACTTCAATCTCCACTATCCCCAAACCCAGGTGAACACGAACTTGGTACGCCATTCTTGCCAAGCCGAAGCGGGGATGGATCTGGAGACAGAAGTCCATTTGGCGATGGAGTTGAAGATGGGCCGCGACTATATTCTTGTCCCAAAGGGATTTCACAGCCTGCAATTGAGATTTCTGTACACAAGTTGGGTGAGGATTTCACTCTTAATTCACTCCTTCGTTTGATTTGTGTACAACAAAACTGGACCTTTCTTCTTGGTCTTCTTCATCGGCGACTCTGGGCTTTGCATGTTGTTTTCTGGCTTTGTGAGTTCGAACAAGGCAAGGGTGCACTTCGGGTTGTGACAGCAACATTCCTGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.87

Weight (kDa)

6.27

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 26, 217
AciI CCGC 2 cut(s) 162, 215
AclWI GGATC 1 cut(s) 178
AfaI GTAC 3 cut(s) 139, 270, 324
AfiI CCNNNNNNNGG 2 cut(s) 119, 163
AgsI TTSAA 2 cut(s) 98, 206
AjnI CCWGG 1 cut(s) 118
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 2 cut(s) 33, 171
Alw44I GTGCAC 1 cut(s) 420
AlwI GGATC 1 cut(s) 178
AoxI GGCC 2 cut(s) 35, 212
ApaLI GTGCAC 1 cut(s) 420
ApeKI GCWGC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 36, 212, 336
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 134, 293
AsuII TTCGAA 1 cut(s) 405
AvaII GGWCC 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 1 cut(s) 73
BccI CCATC 3 cut(s) 161, 191, 203
BciT130I CCWGG 1 cut(s) 120
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 2 cut(s) 33, 171
BisI GCNGC 2 cut(s) 87, 215
BlsI GCNGC 2 cut(s) 88, 216
Bme1390I CCNGG 2 cut(s) 39, 120
Bme18I GGWCC 1 cut(s) 336
BmgT120I GGNCC 3 cut(s) 36, 212, 336
BmrFI CCNGG 2 cut(s) 39, 120
BoxI GACNNNNGTC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 344
BpmI CTGGAG 1 cut(s) 195
Bpu14I TTCGAA 1 cut(s) 405
BpuMI CCSGG 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 163
Bse1I ACTGG 1 cut(s) 338
BseBI CCWGG 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 1 cut(s) 172
BseLI CCNNNNNNNGG 2 cut(s) 119, 163
BseMII CTCAG 1 cut(s) 24
BseNI ACTGG 1 cut(s) 338
BseSI GKGCMC 1 cut(s) 424
BseXI GCAGC 1 cut(s) 73
Bsh1236I CGCG 2 cut(s) 26, 217
BshFI GGCC 2 cut(s) 37, 214
BsiHKAI GWGCWC 1 cut(s) 424
BsiSI CCGG 1 cut(s) 39
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 2 cut(s) 119, 163
BsmAI GTCTC 2 cut(s) 33, 171
BsmBI CGTCTC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 2 cut(s) 37, 214
Bsp119I TTCGAA 1 cut(s) 405
Bsp1286I GDGCHC 1 cut(s) 424
Bsp1407I TGTACA 2 cut(s) 268, 322
Bsp143I GATC 1 cut(s) 170
BspACI CCGC 2 cut(s) 162, 215
BspANI GGCC 2 cut(s) 37, 214
BspCNI CTCAG 1 cut(s) 23
BspFNI CGCG 2 cut(s) 26, 217
BspPI GGATC 1 cut(s) 178
BspT104I TTCGAA 1 cut(s) 405
BsrGI TGTACA 2 cut(s) 268, 322
BsrI ACTGG 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 1 cut(s) 170
Bst2UI CCWGG 1 cut(s) 120
BstAUI TGTACA 2 cut(s) 268, 322
BstBI TTCGAA 1 cut(s) 405
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 1 cut(s) 10
BstF5I GGATG 1 cut(s) 172
BstFNI CGCG 2 cut(s) 26, 217
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 1 cut(s) 173
BstMAI GTCTC 2 cut(s) 33, 171
BstMBI GATC 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 148
BstNI CCWGG 1 cut(s) 120
BstNSI RCATGY 1 cut(s) 383
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 2 cut(s) 37, 118
BstSLI GKGCMC 1 cut(s) 424
BstUI CGCG 2 cut(s) 26, 217
BstV1I GCAGC 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
BsuRI GGCC 2 cut(s) 37, 214
BtgZI GCGATG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 252
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 36, 212, 336
CseI GACGC 1 cut(s) 15
Csp6I GTAC 3 cut(s) 138, 269, 323
CviAII CATG 1 cut(s) 380
CviJI RGCY 7 cut(s) 37, 86, 156, 214, 250, 374, 394
CviKI_1 RGCY 7 cut(s) 37, 86, 156, 214, 250, 374, 394
CviQI GTAC 3 cut(s) 138, 269, 323
DdeI CTNAG 1 cut(s) 10
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
Eco47I GGWCC 1 cut(s) 336
EcoRII CCWGG 1 cut(s) 118
Esp3I CGTCTC 1 cut(s) 33
FaeI CATG 1 cut(s) 383
FaiI YATR 2 cut(s) 223, 381
FaqI GGGAC 1 cut(s) 216
FatI CATG 1 cut(s) 379
FauI CCCGC 1 cut(s) 155
Fnu4HI GCNGC 2 cut(s) 87, 215
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 2 cut(s) 87, 215
GlaI GCGC 1 cut(s) 25
GluI GCNGC 2 cut(s) 87, 215
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 2 cut(s) 37, 214
HapII CCGG 1 cut(s) 39
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 383
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 1 cut(s) 366
HpaII CCGG 1 cut(s) 39
HphI GGTGA 2 cut(s) 134, 293
Hpy166II GTNNAC 4 cut(s) 125, 271, 323, 422
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 174
Hpy8I GTNNAC 4 cut(s) 125, 271, 323, 422
HpyAV CCTTC 1 cut(s) 317
HpyCH4V TGCA 4 cut(s) 45, 254, 379, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 1 cut(s) 10
Hsp92II CATG 1 cut(s) 383
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 1 cut(s) 170
LpnPI CCDG 9 cut(s) 19, 52, 105, 132, 159, 264, 319, 355, 376
Lsp1109I GCAGC 1 cut(s) 73
MaeIII GTNAC 1 cut(s) 433
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MboII GAAGA 4 cut(s) 218, 335, 344, 347
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 424
MluCI AATT 2 cut(s) 255, 298
MlyI GAGTC 1 cut(s) 360
MnlI CCTC 1 cut(s) 277
MseI TTAA 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 86
MspI CCGG 1 cut(s) 39
MspR9I CCNGG 2 cut(s) 39, 120
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 120
MvnI CGCG 2 cut(s) 26, 217
MwoI GCNNNNNNNGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 39
NdeII GATC 1 cut(s) 170
NlaIII CATG 1 cut(s) 383
NmuCI GTSAC 1 cut(s) 433
NspI RCATGY 1 cut(s) 383
NspV TTCGAA 1 cut(s) 405
PkrI GCNGC 2 cut(s) 88, 216
PleI GAGTC 1 cut(s) 360
PpsI GAGTC 1 cut(s) 360
PshAI GACNNNNGTC 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 118
PspGI CCWGG 1 cut(s) 118
PspPI GGNCC 3 cut(s) 36, 212, 336
PsuI RGATCY 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 3 cut(s) 139, 270, 324
RsaNI GTAC 3 cut(s) 138, 269, 323
SaqAI TTAA 1 cut(s) 297
SatI GCNGC 2 cut(s) 87, 215
Sau3AI GATC 1 cut(s) 170
Sau96I GGNCC 3 cut(s) 36, 212, 336
SchI GAGTC 1 cut(s) 360
ScrFI CCNGG 2 cut(s) 39, 120
SduI GDGCHC 1 cut(s) 424
SetI ASST 3 cut(s) 88, 124, 341
SfuI TTCGAA 1 cut(s) 405
SinI GGWCC 1 cut(s) 336
Sse9I AATT 2 cut(s) 255, 298
SsiI CCGC 2 cut(s) 162, 215
StyD4I CCNGG 2 cut(s) 37, 118
TaqI TCGA 1 cut(s) 405
TasI AATT 2 cut(s) 255, 298
TatI WGTACW 2 cut(s) 268, 322
TauI GCSGC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 297
Tru9I TTAA 1 cut(s) 297
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 2 cut(s) 17, 347
VneI GTGCAC 1 cut(s) 420
VpaK11BI GGWCC 1 cut(s) 336
XceI RCATGY 1 cut(s) 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.