RchiOBHm_Chr5g0034701

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000571
Physical Location & Seq
Forward (+)
28589924 .. 28590372
449 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31367

Sequence Viewer

Length: 177 bp
ATGATGTCATTTTGCCCATTCTTCCTGCGAAGAAGAGAAAGGAGACTAGGGACCAGCCCATTCTCCCTAACTCAACTCCTGCCACCTTCTCCGTCACCACCCGAAGAAGAGGGTGTGGGCACTTCCACCCGATTTGTTCCCCGAGAAGCCAGTTTCGGAGCAGGATTTGAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.48

Weight (kDa)

8.0

Isoelectric Point (pI)

111.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 37
Ama87I CYCGRG 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 87
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 1 cut(s) 51
BaeGI GKGCMC 1 cut(s) 122
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 1 cut(s) 47
Bme18I GGWCC 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 51
BmiI GGNNCC 1 cut(s) 52
BsaBI GATNNNNATC 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 169
BseJI GATNNNNATC 1 cut(s) 169
BseNI ACTGG 1 cut(s) 150
BseSI GKGCMC 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 64
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 150
Bst6I CTCTTC 2 cut(s) 28, 102
BstMAI GTCTC 1 cut(s) 37
BstSLI GKGCMC 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 51
CspCI CAANNNNNGTGG 2 cut(s) 115, 150
CviJI RGCY 2 cut(s) 57, 149
CviKI_1 RGCY 2 cut(s) 57, 149
Eam1104I CTCTTC 2 cut(s) 28, 102
EarI CTCTTC 2 cut(s) 28, 102
Eco47I GGWCC 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 141
FaqI GGGAC 1 cut(s) 64
FspBI CTAG 1 cut(s) 47
HinfI GANTC 1 cut(s) 170
HphI GGTGA 1 cut(s) 87
Hpy188I TCNGA 1 cut(s) 158
Hpy188III TCNNGA 1 cut(s) 174
HpyAV CCTTC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 5 cut(s) 38, 67, 92, 147, 163
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 93
MboII GAAGA 5 cut(s) 13, 42, 45, 116, 119
MhlI GDGCHC 1 cut(s) 122
MnlI CCTC 1 cut(s) 103
NlaIV GGNNCC 1 cut(s) 52
NmuCI GTSAC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 170
PspN4I GGNNCC 1 cut(s) 52
PspPI GGNCC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 51
SduI GDGCHC 1 cut(s) 122
SetI ASST 1 cut(s) 88
SgeI CNNG 9 cut(s) 37, 59, 66, 91, 113, 141, 153, 155, 162
SinI GGWCC 1 cut(s) 51
SspMI CTAG 1 cut(s) 47
TfiI GAWTC 1 cut(s) 170
TseFI GTSAC 1 cut(s) 93
Tsp45I GTSAC 1 cut(s) 93
TspGWI ACGGA 1 cut(s) 81
VpaK11BI GGWCC 1 cut(s) 51
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.