Rorug05G0196300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000571
Physical Location & Seq
Reverse (-)
19361347 .. 19363837
2491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0196300.1

Sequence Viewer

Length: 1752 bp
ATGGTGCAACGGAGGGTTTCTTCTCCTGTTCTCGGGGTGTTCGACAAGGTTTTGAGTAGGGGTCTCACCAAGTTGGCAGAGGATGGGCGTACTGACTTGATGTCAGCTCCTCTTGGTATTACTCCGCCCTCTCATGTTCTTTTTGCAGATGATATTATGGTTTTCATGCGGGGTACTAAGCGTTCGTTGAGAAATCTAATGCTTTTTATGGAGGAATATGGCTTGAATTCGGGGCAGCGAATCAACAGAGCAAAATCTCTAGTTTTTTTGGGGAAATATGCCTCCCGTCGTCGTTTTATTATCCGGAAGTTTCTTGGTGTTAAGCAAGGTTCTCTTCCTTTCACTTATCTTGGCGTCCCTATATTCCAGGGACGTCCAAAAAAACTATATTTTCAGGCCATTGCAGATAGAGTACGATGTAAACTGGCATCTTGGAAAGGTTCTTTGCTTTCACAAGCAGGTAGGATTCAGCTTATTCAGTCAGTGATACAAGGCATTTTGGTCTACAGTTTCCAAATTTATGAGTGGCCGACATGCCTGCTTCGTGACCTGCAATCTTGTATTAGGAATTTTTTTTGGACTGGTGATCCTTTAAAAAGAGGCATGCCTCTTCTAGCTTGGCGTATTTGCTGTAAACCCAAGGTGGAAGGAGGTTTGGGATTACGTGATCTCTTTGAGGCTAATCGTGCTCTTCTAATAAAGCGGTGTTGGGAGGTGCTCTCTTCTTCCTCTCCTGCTTCTATTTTGGTAAGGACTCGGTTTTTAAATGAAGACTTTCAACCTCTAAAATCTTTTAAAAAATCCTCAGTTTGGTTGGGTCTCAAAAAGGTTTGGCCTACATTCTTCAATTCTCTACAATGGTGTGTTGGCAATGGTCGGAAAATTTCCTTTTGGTTTGATAATTGGTTAGGTGAGCCTTTAGCTTCCACTATTGGAGTAGCTGGCGCCATTCCGCTCCAAGCCAAACTGCATGAGTTTATTGTGGATTCGAATTGGGTTCTTCCAGAAGATTTTATAGCTTCCTTTCCTCAAGTTGCTGGTAAAATAAAGCAAATTGCTTTGCCTGTGGAAGACACAACTGATTCCCTTTTGTGGCCTGGTTCCTCCTCAGGTGTTCTGACAGCTAAAGAAGCCTTTACTTTCTTTTCAAGTCACATTGATCGTCGGAATTGGGGTCAAGTCATATGGAACAAAGCAATTCAGCCACGCAAAAGCCTTGTTGTTTGGAAAGCTCTTCATGGGCGGCTGCTTACGGATGATGCATTGCAGCGGCGAGGTTTTTCCCTCCCATCCTGTTGCTCTTTCTGTGGTAGTCATGCCGAGTCATATACGCATCTTCTCCTACACTGTCCTCAAATTGTGCCTTTATGGAAATGGATTTGTCTTCTTTTTTCTCATTCTTTCTCCCCTTGGAATACTCTTGAGGAAGTGTTTTTTGGAGATTTTGCTTCTACTCTCTCTAAACATAAGCGTCAGCTTTGGTTTCTAGTAATTGGCAATCTAATTTGGTATATTTGGATCACTAGAAATCTGCTGCGTTTTGAGGCTAAGGTGTTTGATGTTTTGGATGCCCAGCGTCAGCTTTTGGAGTTGTTCAAGGAGTCTGCTAAGCTTTCTTTCCATCCCTACAAAAAGCACACAATTGCTTCTATTTACTCTATTCTTGGGATCTCTCAATTGTCAGCTGCTGCTGCTAGTTTTATTCCGTCCTTCCATTCTTTGGAACTGGTTTCACTCTATCATCCACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

583

Amino Acids

66.52

Weight (kDa)

9.87

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 375 - 457 3.2e-18 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 376
Acc36I ACCTGC 2 cut(s) 449, 558
AccB1I GGYRCC 1 cut(s) 944
AccB7I CCANNNNNTGG 1 cut(s) 1720
AccBSI CCGCTC 1 cut(s) 955
AccI GTMKAC 1 cut(s) 504
AccIII TCCGGA 1 cut(s) 303
AciI CCGC 6 cut(s) 125, 169, 703, 953, 1243, 1270
AclWI GGATC 3 cut(s) 581, 1526, 1676
AcoI YGGCCR 1 cut(s) 527
AcsI RAATTY 4 cut(s) 226, 516, 568, 882
AcyI GRCGYC 3 cut(s) 354, 373, 945
AfaI GTAC 3 cut(s) 91, 175, 414
AfiI CCNNNNNNNGG 4 cut(s) 32, 810, 1092, 1720
AgsI TTSAA 5 cut(s) 226, 779, 847, 1149, 1597
AhdI GACNNNNNGTC 1 cut(s) 100
AjnI CCWGG 2 cut(s) 366, 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 1419, 1451
Alw21I GWGCWC 2 cut(s) 691, 720
Alw26I GTCTC 2 cut(s) 68, 824
AlwI GGATC 3 cut(s) 581, 1526, 1676
AlwNI CAGNNNCTG 1 cut(s) 1688
Ama87I CYCGRG 1 cut(s) 32
Aor13HI TCCGGA 1 cut(s) 303
AoxI GGCC 4 cut(s) 396, 527, 833, 1094
ApeKI GCWGC 7 cut(s) 235, 1246, 1267, 1534, 1685, 1688, 1691
ApoI RAATTY 4 cut(s) 226, 516, 568, 882
Asp700I GAANNNNTTC 1 cut(s) 774
AspLEI GCGC 1 cut(s) 947
AsuHPI GGTGA 3 cut(s) 58, 596, 923
AsuII TTCGAA 1 cut(s) 989
AvaI CYCGRG 1 cut(s) 32
AxyI CCTNAGG 1 cut(s) 1108
BanI GGYRCC 1 cut(s) 944
BbsI GAAGAC 3 cut(s) 777, 1077, 1376
Bbv12I GWGCWC 2 cut(s) 691, 720
BbvI GCAGC 7 cut(s) 247, 1233, 1279, 1521, 1672, 1675, 1678
BccI CCATC 3 cut(s) 77, 1297, 1629
BcgI CGANNNNNNTGC 2 cut(s) 520, 554
BciT130I CCWGG 2 cut(s) 368, 1098
BcoDI GTCTC 2 cut(s) 68, 824
BfaI CTAG 5 cut(s) 260, 614, 1487, 1524, 1695
BfmI CTRYAG 1 cut(s) 505
BfoI RGCGCY 1 cut(s) 948
BfuAI ACCTGC 2 cut(s) 449, 558
BisI GCNGC 9 cut(s) 236, 1244, 1247, 1268, 1271, 1535, 1686, 1689, 1692
BlpI GCTNAGC 1 cut(s) 1608
BlsI GCNGC 9 cut(s) 237, 1245, 1248, 1269, 1272, 1536, 1687, 1690, 1693
Bme1390I CCNGG 2 cut(s) 368, 1098
BmeRI GACNNNNNGTC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 946, 1102
BmrFI CCNGG 2 cut(s) 368, 1098
BmsI GCATC 4 cut(s) 437, 1249, 1342, 1558
BpiI GAAGAC 3 cut(s) 777, 1077, 1376
BplI GAGNNNNNCTC 2 cut(s) 704, 736
Bpu10I CCTNAGC 1 cut(s) 1548
Bpu1102I GCTNAGC 1 cut(s) 1608
Bpu14I TTCGAA 1 cut(s) 989
BpuEI CTTGAG 2 cut(s) 1014, 1442
BsaAI YACGTR 1 cut(s) 665
BsaHI GRCGYC 3 cut(s) 354, 373, 945
BsaI GGTCTC 2 cut(s) 68, 824
BsaJI CCNNGG 3 cut(s) 367, 639, 1409
BsaWI WCCGGW 1 cut(s) 303
Bsc4I CCNNNNNNNGG 4 cut(s) 32, 810, 1092, 1720
Bse1I ACTGG 3 cut(s) 429, 586, 1731
Bse21I CCTNAGG 1 cut(s) 1108
Bse3DI GCAATG 3 cut(s) 399, 877, 1262
BseAI TCCGGA 1 cut(s) 303
BseBI CCWGG 2 cut(s) 368, 1098
BseDI CCNNGG 3 cut(s) 367, 639, 1409
BseGI GGATG 6 cut(s) 88, 1261, 1289, 1573, 1621, 1741
BseLI CCNNNNNNNGG 4 cut(s) 32, 810, 1092, 1720
BseMI GCAATG 3 cut(s) 399, 877, 1262
BseMII CTCAG 2 cut(s) 819, 1122
BseNI ACTGG 3 cut(s) 429, 586, 1731
BseRI GAGGAG 2 cut(s) 99, 1096
BseXI GCAGC 7 cut(s) 247, 1233, 1279, 1521, 1672, 1675, 1678
BseYI CCCAGC 1 cut(s) 1572
BshFI GGCC 4 cut(s) 398, 529, 835, 1096
BshNI GGYRCC 1 cut(s) 944
BsiHKAI GWGCWC 2 cut(s) 691, 720
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 1 cut(s) 304
BslFI GGGAC 2 cut(s) 341, 384
BslI CCNNNNNNNGG 4 cut(s) 32, 810, 1092, 1720
BsmAI GTCTC 2 cut(s) 68, 824
BsmFI GGGAC 2 cut(s) 341, 384
BsnI GGCC 4 cut(s) 398, 529, 835, 1096
Bso31I GGTCTC 2 cut(s) 68, 824
BsoBI CYCGRG 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 989
Bsp1286I GDGCHC 2 cut(s) 691, 720
Bsp13I TCCGGA 1 cut(s) 303
Bsp143I GATC 5 cut(s) 586, 667, 1159, 1518, 1668
Bsp1720I GCTNAGC 1 cut(s) 1608
BspACI CCGC 6 cut(s) 125, 169, 703, 953, 1243, 1270
BspANI GGCC 4 cut(s) 398, 529, 835, 1096
BspCNI CTCAG 2 cut(s) 818, 1121
BspEI TCCGGA 1 cut(s) 303
BspLI GGNNCC 2 cut(s) 946, 1102
BspMI ACCTGC 2 cut(s) 449, 558
BspPI GGATC 3 cut(s) 581, 1526, 1676
BspQI GCTCTTC 2 cut(s) 696, 1239
BspT104I TTCGAA 1 cut(s) 989
BspT107I GGYRCC 1 cut(s) 944
BspTNI GGTCTC 2 cut(s) 68, 824
BsrBI CCGCTC 1 cut(s) 955
BsrDI GCAATG 3 cut(s) 399, 877, 1262
BsrI ACTGG 3 cut(s) 429, 586, 1731
BssECI CCNNGG 3 cut(s) 367, 639, 1409
BssMI GATC 5 cut(s) 586, 667, 1159, 1518, 1668
BssNI GRCGYC 3 cut(s) 354, 373, 945
BssT1I CCWWGG 2 cut(s) 639, 1409
Bst2UI CCWGG 2 cut(s) 368, 1098
Bst4CI ACNGT 2 cut(s) 509, 1349
Bst6I CTCTTC 5 cut(s) 339, 615, 696, 727, 1239
BstACI GRCGYC 3 cut(s) 354, 373, 945
BstBAI YACGTR 1 cut(s) 665
BstBI TTCGAA 1 cut(s) 989
BstC8I GCNNGC 3 cut(s) 539, 605, 943
BstDEI CTNAG 5 cut(s) 177, 805, 1108, 1548, 1608
BstF5I GGATG 6 cut(s) 88, 1261, 1289, 1573, 1621, 1741
BstH2I RGCGCY 1 cut(s) 948
BstHHI GCGC 1 cut(s) 947
BstKTI GATC 5 cut(s) 589, 670, 1162, 1521, 1671
BstMAI GTCTC 2 cut(s) 68, 824
BstMBI GATC 5 cut(s) 586, 667, 1159, 1518, 1668
BstMWI GCNNNNNNNGC 3 cut(s) 686, 1130, 1691
BstNI CCWGG 2 cut(s) 368, 1098
BstNSI RCATGY 2 cut(s) 537, 607
BstSCI CCNGG 2 cut(s) 366, 1096
BstSFI CTRYAG 1 cut(s) 505
BstV1I GCAGC 7 cut(s) 247, 1233, 1279, 1521, 1672, 1675, 1678
BstV2I GAAGAC 3 cut(s) 777, 1077, 1376
BstX2I RGATCY 1 cut(s) 1668
BstYI RGATCY 1 cut(s) 1668
Bsu36I CCTNAGG 1 cut(s) 1108
BsuRI GGCC 4 cut(s) 398, 529, 835, 1096
BtsCI GGATG 6 cut(s) 88, 1261, 1289, 1573, 1621, 1741
BtsIMutI CAGTG 2 cut(s) 489, 1345
BveI ACCTGC 2 cut(s) 449, 558
Cac8I GCNNGC 3 cut(s) 539, 605, 943
CaiI CAGNNNCTG 1 cut(s) 1688
CfoI GCGC 1 cut(s) 947
CseI GACGC 3 cut(s) 343, 1460, 1565
Csp6I GTAC 3 cut(s) 90, 174, 413
CviAII CATG 8 cut(s) 134, 166, 534, 604, 971, 1238, 1316, 1749
CviQI GTAC 3 cut(s) 90, 174, 413
DdeI CTNAG 5 cut(s) 177, 805, 1108, 1548, 1608
DinI GGCGCC 1 cut(s) 946
DpnI GATC 5 cut(s) 588, 669, 1161, 1520, 1670
DpnII GATC 5 cut(s) 586, 667, 1159, 1518, 1668
DraI TTTAAA 3 cut(s) 594, 765, 796
DriI GACNNNNNGTC 1 cut(s) 100
EaeI YGGCCR 1 cut(s) 527
Eam1104I CTCTTC 5 cut(s) 339, 615, 696, 727, 1239
Eam1105I GACNNNNNGTC 1 cut(s) 100
EarI CTCTTC 5 cut(s) 339, 615, 696, 727, 1239
EciI GGCGGA 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 639, 1409
Eco31I GGTCTC 2 cut(s) 68, 824
Eco81I CCTNAGG 1 cut(s) 1108
Eco88I CYCGRG 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 226
EcoRII CCWGG 2 cut(s) 366, 1096
EcoT14I CCWWGG 2 cut(s) 639, 1409
EcoT22I ATGCAT 1 cut(s) 1264
EgeI GGCGCC 1 cut(s) 946
EheI GGCGCC 1 cut(s) 946
ErhI CCWWGG 2 cut(s) 639, 1409
FaeI CATG 8 cut(s) 137, 169, 537, 607, 974, 1241, 1319, 1752
FalI AAGNNNNNCTT 2 cut(s) 318, 350
FaqI GGGAC 2 cut(s) 341, 384
FatI CATG 8 cut(s) 133, 165, 533, 603, 970, 1237, 1315, 1748
FauI CCCGC 1 cut(s) 162
FauNDI CATATG 1 cut(s) 1184
FblI GTMKAC 1 cut(s) 504
Fnu4HI GCNGC 9 cut(s) 236, 1244, 1247, 1268, 1271, 1535, 1686, 1689, 1692
FokI GGATG 6 cut(s) 95, 1268, 1276, 1580, 1608, 1728
Fsp4HI GCNGC 9 cut(s) 236, 1244, 1247, 1268, 1271, 1535, 1686, 1689, 1692
FspBI CTAG 5 cut(s) 260, 614, 1487, 1524, 1695
GlaI GCGC 1 cut(s) 946
GluI GCNGC 9 cut(s) 236, 1244, 1247, 1268, 1271, 1535, 1686, 1689, 1692
GsaI CCCAGC 1 cut(s) 1576
HaeII RGCGCY 1 cut(s) 948
HaeIII GGCC 4 cut(s) 398, 529, 835, 1096
HapII CCGG 1 cut(s) 304
HgaI GACGC 3 cut(s) 343, 1460, 1565
HhaI GCGC 1 cut(s) 947
Hin1I GRCGYC 3 cut(s) 354, 373, 945
Hin1II CATG 8 cut(s) 137, 169, 537, 607, 974, 1241, 1319, 1752
Hin6I GCGC 1 cut(s) 945
HinP1I GCGC 1 cut(s) 945
HindIII AAGCTT 1 cut(s) 1610
HinfI GANTC 7 cut(s) 240, 466, 754, 986, 1082, 1322, 1601
HpaII CCGG 1 cut(s) 304
HphI GGTGA 3 cut(s) 58, 596, 923
Hpy166II GTNNAC 3 cut(s) 422, 505, 635
Hpy188I TCNGA 3 cut(s) 879, 1119, 1167
Hpy188III TCNNGA 4 cut(s) 304, 545, 1004, 1421
Hpy8I GTNNAC 3 cut(s) 422, 505, 635
Hpy99I CGWCG 3 cut(s) 291, 294, 1167
HpyAV CCTTC 2 cut(s) 641, 1720
HpyCH4III ACNGT 2 cut(s) 509, 1349
HpyCH4IV ACGT 2 cut(s) 373, 664
HpyCH4V TGCA 7 cut(s) 7, 146, 404, 553, 970, 1262, 1267
HpyF10VI GCNNNNNNNGC 3 cut(s) 686, 1130, 1691
HpyF3I CTNAG 5 cut(s) 177, 805, 1108, 1548, 1608
HpySE526I ACGT 2 cut(s) 373, 664
Hsp92I GRCGYC 3 cut(s) 354, 373, 945
Hsp92II CATG 8 cut(s) 137, 169, 537, 607, 974, 1241, 1319, 1752
HspAI GCGC 1 cut(s) 945
KasI GGCGCC 1 cut(s) 944
Kpn2I TCCGGA 1 cut(s) 303
Kzo9I GATC 5 cut(s) 586, 667, 1159, 1518, 1668
LguI GCTCTTC 2 cut(s) 696, 1239
LmnI GCTCC 2 cut(s) 112, 960
Lsp1109I GCAGC 7 cut(s) 247, 1233, 1279, 1521, 1672, 1675, 1678
LweI GCATC 4 cut(s) 437, 1249, 1342, 1558
MaeI CTAG 5 cut(s) 260, 614, 1487, 1524, 1695
MaeII ACGT 2 cut(s) 373, 664
MaeIII GTNAC 2 cut(s) 545, 1151
MalI GATC 5 cut(s) 588, 669, 1161, 1520, 1670
MbiI CCGCTC 1 cut(s) 955
MboI GATC 5 cut(s) 586, 667, 1159, 1518, 1668
MfeI CAATTG 2 cut(s) 1641, 1676
MflI RGATCY 1 cut(s) 1668
MhlI GDGCHC 2 cut(s) 691, 720
Mly113I GGCGCC 1 cut(s) 945
MlyI GAGTC 3 cut(s) 748, 1331, 1610
MmeI TCCRAC 2 cut(s) 857, 1145
Mph1103I ATGCAT 1 cut(s) 1264
MroI TCCGGA 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 774
MseI TTAA 4 cut(s) 321, 593, 764, 795
MspA1I CMGCKG 2 cut(s) 1270, 1685
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 2 cut(s) 368, 1098
MunI CAATTG 2 cut(s) 1641, 1676
MvaI CCWGG 2 cut(s) 368, 1098
MwoI GCNNNNNNNGC 3 cut(s) 686, 1130, 1691
NarI GGCGCC 1 cut(s) 945
NdeI CATATG 1 cut(s) 1184
NdeII GATC 5 cut(s) 586, 667, 1159, 1518, 1668
NlaIII CATG 8 cut(s) 137, 169, 537, 607, 974, 1241, 1319, 1752
NlaIV GGNNCC 2 cut(s) 946, 1102
NmeAIII GCCGAG 1 cut(s) 1345
NmuCI GTSAC 2 cut(s) 545, 1151
NsiI ATGCAT 1 cut(s) 1264
NspI RCATGY 2 cut(s) 537, 607
NspV TTCGAA 1 cut(s) 989
PaeI GCATGC 1 cut(s) 607
PciSI GCTCTTC 2 cut(s) 696, 1239
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PdmI GAANNNNTTC 1 cut(s) 774
PfeI GAWTC 4 cut(s) 240, 466, 986, 1082
PflMI CCANNNNNTGG 1 cut(s) 1720
PkrI GCNGC 9 cut(s) 237, 1245, 1248, 1269, 1272, 1536, 1687, 1690, 1693
PleI GAGTC 3 cut(s) 748, 1330, 1609
PluTI GGCGCC 1 cut(s) 948
PpsI GAGTC 3 cut(s) 748, 1330, 1609
Ppu21I YACGTR 1 cut(s) 665
Psp6I CCWGG 2 cut(s) 366, 1096
PspFI CCCAGC 1 cut(s) 1572
PspGI CCWGG 2 cut(s) 366, 1096
PspN4I GGNNCC 2 cut(s) 946, 1102
PsrI GAACNNNNNNTAC 2 cut(s) 166, 198
PstNI CAGNNNCTG 1 cut(s) 1688
PsuI RGATCY 1 cut(s) 1668
PvuII CAGCTG 1 cut(s) 1685
RsaI GTAC 3 cut(s) 91, 175, 414
RsaNI GTAC 3 cut(s) 90, 174, 413
SapI GCTCTTC 2 cut(s) 696, 1239
SaqAI TTAA 4 cut(s) 321, 593, 764, 795
SatI GCNGC 9 cut(s) 236, 1244, 1247, 1268, 1271, 1535, 1686, 1689, 1692
Sau3AI GATC 5 cut(s) 586, 667, 1159, 1518, 1668
SchI GAGTC 3 cut(s) 748, 1331, 1610
ScrFI CCNGG 2 cut(s) 368, 1098
SduI GDGCHC 2 cut(s) 691, 720
SfaNI GCATC 4 cut(s) 437, 1249, 1342, 1558
SfcI CTRYAG 1 cut(s) 505
SfoI GGCGCC 1 cut(s) 946
SfuI TTCGAA 1 cut(s) 989
SmlI CTYRAG 2 cut(s) 1029, 1421
SmoI CTYRAG 2 cut(s) 1029, 1421
SphI GCATGC 1 cut(s) 607
SsiI CCGC 6 cut(s) 125, 169, 703, 953, 1243, 1270
SspDI GGCGCC 1 cut(s) 944
SspMI CTAG 5 cut(s) 260, 614, 1487, 1524, 1695
StyD4I CCNGG 2 cut(s) 366, 1096
StyI CCWWGG 2 cut(s) 639, 1409
TaaI ACNGT 2 cut(s) 509, 1349
TaiI ACGT 2 cut(s) 376, 667
TaqI TCGA 2 cut(s) 42, 989
TauI GCSGC 2 cut(s) 1246, 1273
TfiI GAWTC 4 cut(s) 240, 466, 986, 1082
Tru1I TTAA 4 cut(s) 321, 593, 764, 795
Tru9I TTAA 4 cut(s) 321, 593, 764, 795
TscAI CASTG 2 cut(s) 489, 1352
TseFI GTSAC 2 cut(s) 545, 1151
TseI GCWGC 7 cut(s) 235, 1246, 1267, 1534, 1685, 1688, 1691
Tsp45I GTSAC 2 cut(s) 545, 1151
TspDTI ATGAA 3 cut(s) 154, 783, 1226
TspGWI ACGGA 3 cut(s) 25, 1268, 1695
TspRI CASTG 2 cut(s) 489, 1352
Van91I CCANNNNNTGG 1 cut(s) 1720
XapI RAATTY 4 cut(s) 226, 516, 568, 882
XceI RCATGY 2 cut(s) 537, 607
XmiI GTMKAC 1 cut(s) 504
XmnI GAANNNNTTC 1 cut(s) 774
XspI CTAG 5 cut(s) 260, 614, 1487, 1524, 1695
ZraI GACGTC 1 cut(s) 374
Zsp2I ATGCAT 1 cut(s) 1264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.