Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

8082591 .. 8082866

Gene Structure 276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG076700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTTGAGCAAAGGGATAGAGCCCACTAAGGAAACTTATACATCGCTTATTTATGTTTTGAGTAAAAGGAAGAGAATGAATGAGGCAGATGACTTGTTTGAGAAGATACTGCATAATGGTGTTCTTCCAGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCGCGCATTTTCGCTTTTGAGGGAGATGGATAAAGTAAAGGTTCATCCAGATGAAGTGACTTACAATACCCTAATGCAAGGGGAAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

91

Amino Acids

10.4

Weight (kDa)

5.53

Isoelectric Point (pI)

17.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	1 - 88	6.3e-09	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	3 - 53	8.3e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	12 - 45	9.4e-06	PPR repeat family
PPR_3	PF13812	32 - 88	5.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	39 - 71	2.6e-12	PPR repeat
PPR_2	PF13041	43 - 89	5e-17	PPR repeat family
PPR	PF01535	46 - 73	2.1e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	145
AspLEI	GCGC	2 cut(s)	189, 191
BanII	GRGCYC	1 cut(s)	24
BccI	CCATC	2 cut(s)	152, 205
BglII	AGATCT	1 cut(s)	130
BseGI	GGATG	1 cut(s)	229
BsePI	GCGCGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	130
BspFNI	CGCG	1 cut(s)	189
BssHII	GCGCGC	1 cut(s)	187
BssMI	GATC	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	65
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	189
BstHHI	GCGC	2 cut(s)	189, 191
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstUI	CGCG	1 cut(s)	189
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BtgZI	GCGATG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	2 cut(s)	189, 191
CviJI	RGCY	1 cut(s)	22
CviKI_1	RGCY	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	24
EcoT38I	GRGCYC	1 cut(s)	24
FaiI	YATR	4 cut(s)	39, 54, 114, 182
FokI	GGATG	1 cut(s)	216
FriOI	GRGCYC	1 cut(s)	24
GlaI	GCGC	2 cut(s)	188, 190
HhaI	GCGC	2 cut(s)	189, 191
Hin6I	GCGC	2 cut(s)	187, 189
HinP1I	GCGC	2 cut(s)	187, 189
Hpy188III	TCNNGA	2 cut(s)	128, 233
HpyCH4V	TGCA	2 cut(s)	112, 262
HpyF3I	CTNAG	1 cut(s)	27
HspAI	GCGC	2 cut(s)	187, 189
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	2 cut(s)	141, 246
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	82, 115, 116
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	24
MnlI	CCTC	2 cut(s)	76, 198
MslI	CAYNNNNRTG	2 cut(s)	117, 234
MvnI	CGCG	1 cut(s)	189
NdeII	GATC	1 cut(s)	130
NmuCI	GTSAC	1 cut(s)	241
PauI	GCGCGC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	130
PteI	GCGCGC	1 cut(s)	187
RseI	CAYNNNNRTG	2 cut(s)	117, 234
Sau3AI	GATC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	1 cut(s)	228
SgeI	CNNG	6 cut(s)	106, 140, 146, 163, 200, 245
SmiMI	CAYNNNNRTG	2 cut(s)	117, 234
TseFI	GTSAC	1 cut(s)	241
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	3 cut(s)	92, 218, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.