Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00946

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

14922 .. 16458

Gene Structure 1537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G020720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTTTAGGTTGAAGATCAAGTCCAGTGTTTGTACTTTTAACATCATGATTAATGTGTTGTGTAAACAAGGCAAGTTGAACAAGGCGAAGGAGTTTCTTGGGTTTATGGAGGTTTTGGGGATTAAGCCTACTGTTGTTACTTATAACACTATCATTCATGCGTTTTGTTTGAGAGGCAGAGTTGGAGGGGCTCAGATGATCTTTAGTGCTATGAAAGGTAGAGGTGTTCAGCCCGATTCTTACATGTATGGATTGCTTATTAGTGGGATGTGCAAGGAAGGAAGACTTGCTGAAGCATCCGGTCTTTTTGATAAAATGCTGCAAATTGGGCTGCTTCCGATTGCTGTTACTTATAACACGTTGATTCATGGTTATTGCAATAAGGGTGATCTGGACAGGGCTTTTGGTTATAGAGATGAGATGGTGAAGAAGGGTATAATGCCGACGGTGTCAACTTACAATTTGTTGATTCATGAATTATTTATACAAGGTAGGGTGAGTGAGGCTGATTGTATGGTTAGAGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACATATAATATCCTGATTAATGGCTATTGCAGGTCTGGGAATGCAAAGAAAGCGTTTATCCTTCGCGATGAAATGTTGAGTAAAGGGATAGAGCCCACTAAGGAAACTTATACATCACTTATTTATATACTGCATAAGGGTGTTCTACCGGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCGTGCATTTTCGCTTTTGAGGCAGATGGATAAAATGAAGGTTCATCCAGATGAATTGACGTACAATACCCTAATGCAAGGGCGCTGCAGGGCAGGGAAAGTTCAGGAAGCTCGGGAACTTCTGGATGAGATAAAGACAAGGGGAATTAAGCACGAGATGTTGAGTATAGGTTTCAATCCTACACATCTAACCGACAATGCTCTTATAAAAGGTCTATGCAAAAACCAAGAAGGTGATCTTGCTCACGAGCTCCTTAAAGAAATGGTGAGCAGAGGGATTACTCCCGATGACAGCACATATTACTCTCTGATTGACGGAATTGAGAATGTTGAGAAATTTCTCAGAAGGGCGATTCATGAAGTCTCTCTCTCTCTCCGTGTATTGTACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

385

Amino Acids

43.43

Weight (kDa)

8.66

Isoelectric Point (pI)

27.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	3 - 55	4.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	7 - 37	1e-08	PPR repeat
PPR_2	PF13041	9 - 56	8.3e-15	PPR repeat family
PPR	PF01535	12 - 41	6.6e-06	PPR repeat
PPR_1	PF12854	40 - 72	1e-10	PPR repeat
PPR_2	PF13041	43 - 92	9.3e-15	PPR repeat family
PPR	PF01535	46 - 76	6.8e-06	PPR repeat
PPR_long	PF17177	66 - 157	2.1e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	67 - 122	1.3e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	74 - 106	7.2e-11	PPR repeat
PPR	PF01535	81 - 110	4.7e-06	PPR repeat
PPR_3	PF13812	102 - 157	1.7e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	110 - 142	5.6e-11	PPR repeat
PPR_2	PF13041	115 - 160	7.1e-16	PPR repeat family
PPR	PF01535	116 - 146	1.7e-09	PPR repeat
PPR_2	PF13041	148 - 197	6.9e-16	PPR repeat family
PPR_long	PF17177	167 - 228	1.9e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	173 - 227	2.5e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	179 - 211	3.9e-13	PPR repeat
PPR_2	PF13041	183 - 228	5e-16	PPR repeat family
PPR	PF01535	186 - 216	4.6e-09	PPR repeat
PPR_1	PF12854	232 - 264	3.7e-11	PPR repeat
PPR_3	PF13812	232 - 281	3.3e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	236 - 285	2.4e-16	PPR repeat family
PPR	PF01535	239 - 268	3.8e-07	PPR repeat
PPR_1	PF12854	269 - 299	6.6e-10	PPR repeat
PPR_2	PF13041	271 - 329	1.6e-10	PPR repeat family
PPR	PF01535	275 - 304	5.1e-06	PPR repeat
PPR_2	PF13041	319 - 361	5.8e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	144, 354, 971
Acc36I	ACCTGC	1 cut(s)	579
AccII	CGCG	1 cut(s)	624
AclWI	GGATC	1 cut(s)	717
AcsI	RAATTY	1 cut(s)	1100
AcuI	CTGAAG	1 cut(s)	312
AfaI	GTAC	3 cut(s)	34, 827, 1151
AflIII	ACRYGT	2 cut(s)	243, 357
AgsI	TTSAA	4 cut(s)	13, 79, 724, 940
AluBI	AGCT	2 cut(s)	875, 1015
AluI	AGCT	2 cut(s)	875, 1015
Alw21I	GWGCWC	1 cut(s)	1017
Alw26I	GTCTC	1 cut(s)	1132
AlwI	GGATC	1 cut(s)	717
Ama87I	CYCGRG	1 cut(s)	876
ApeKI	GCWGC	3 cut(s)	319, 331, 849
ApoI	RAATTY	1 cut(s)	1100
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AseI	ATTAAT	2 cut(s)	51, 576
AspLEI	GCGC	1 cut(s)	849
AsuHPI	GGTGA	5 cut(s)	398, 436, 508, 1010, 1042
AvaI	CYCGRG	1 cut(s)	876
BanII	GRGCYC	3 cut(s)	193, 654, 1017
BauI	CACGAG	2 cut(s)	917, 1010
BbsI	GAAGAC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	1017
BbvI	GCAGC	3 cut(s)	306, 318, 836
BccI	CCATC	3 cut(s)	415, 731, 784
BcoDI	GTCTC	1 cut(s)	1132
BfmI	CTRYAG	1 cut(s)	850
BfoI	RGCGCY	1 cut(s)	850
BfuAI	ACCTGC	1 cut(s)	579
BisI	GCNGC	3 cut(s)	320, 332, 850
BlsI	GCNGC	3 cut(s)	321, 333, 851
BmeT110I	CYCGRG	1 cut(s)	876
BmiI	GGNNCC	1 cut(s)	546
BmsI	GCATC	2 cut(s)	305, 541
BpiI	GAAGAC	1 cut(s)	289
BsaWI	WCCGGW	2 cut(s)	299, 706
Bse1I	ACTGG	1 cut(s)	24
BseGI	GGATG	4 cut(s)	273, 296, 808, 895
BseMII	CTCAG	2 cut(s)	206, 1120
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	306, 318, 836
Bsh1236I	CGCG	1 cut(s)	624
BsiHKAI	GWGCWC	1 cut(s)	1017
BsiHKCI	CYCGRG	1 cut(s)	876
BsiSI	CCGG	2 cut(s)	300, 707
BsmAI	GTCTC	1 cut(s)	1132
BsmI	GAATGC	1 cut(s)	604
BsoBI	CYCGRG	1 cut(s)	876
Bsp1286I	GDGCHC	3 cut(s)	193, 654, 1017
Bsp143I	GATC	5 cut(s)	15, 198, 388, 709, 1000
Bsp68I	TCGCGA	1 cut(s)	624
BspCNI	CTCAG	2 cut(s)	205, 1119
BspFNI	CGCG	1 cut(s)	624
BspHI	TCATGA	3 cut(s)	45, 472, 1120
BspLI	GGNNCC	1 cut(s)	546
BspMAI	CTGCAG	1 cut(s)	854
BspMI	ACCTGC	1 cut(s)	579
BspPI	GGATC	1 cut(s)	717
BsrI	ACTGG	1 cut(s)	24
BssMI	GATC	5 cut(s)	15, 198, 388, 709, 1000
BssSI	CACGAG	2 cut(s)	917, 1010
Bst2BI	CACGAG	2 cut(s)	917, 1010
Bst4CI	ACNGT	2 cut(s)	133, 448
Bst6I	CTCTTC	1 cut(s)	525
BstC8I	GCNNGC	1 cut(s)	768
BstDEI	CTNAG	3 cut(s)	192, 657, 1106
BstF5I	GGATG	4 cut(s)	273, 296, 808, 895
BstFNI	CGCG	1 cut(s)	624
BstH2I	RGCGCY	1 cut(s)	850
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	5 cut(s)	18, 201, 391, 712, 1003
BstMAI	GTCTC	1 cut(s)	1132
BstMBI	GATC	5 cut(s)	15, 198, 388, 709, 1000
BstMWI	GCNNNNNNNGC	3 cut(s)	328, 608, 784
BstNSI	RCATGY	1 cut(s)	247
BstSFI	CTRYAG	1 cut(s)	850
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	3 cut(s)	306, 318, 836
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	709
BstYI	RGATCY	1 cut(s)	709
BtgZI	GCGATG	1 cut(s)	639
BtsCI	GGATG	4 cut(s)	273, 296, 808, 895
BtsIMutI	CAGTG	1 cut(s)	31
BtuMI	TCGCGA	1 cut(s)	624
BveI	ACCTGC	1 cut(s)	579
Cac8I	GCNNGC	1 cut(s)	768
CciI	TCATGA	3 cut(s)	45, 472, 1120
CfoI	GCGC	1 cut(s)	849
Csp6I	GTAC	3 cut(s)	33, 826, 1150
CviAII	CATG	6 cut(s)	46, 158, 244, 368, 473, 1121
CviQI	GTAC	3 cut(s)	33, 826, 1150
DdeI	CTNAG	3 cut(s)	192, 657, 1106
DpnI	GATC	5 cut(s)	17, 200, 390, 711, 1002
DpnII	GATC	5 cut(s)	15, 198, 388, 709, 1000
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Ecl136II	GAGCTC	1 cut(s)	1015
Eco24I	GRGCYC	3 cut(s)	193, 654, 1017
Eco53kI	GAGCTC	1 cut(s)	1015
Eco57I	CTGAAG	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	876
EcoICRI	GAGCTC	1 cut(s)	1015
EcoT38I	GRGCYC	3 cut(s)	193, 654, 1017
FaeI	CATG	6 cut(s)	49, 161, 247, 371, 476, 1124
FalI	AAGNNNNNCTT	4 cut(s)	270, 302, 987, 1019
FatI	CATG	6 cut(s)	45, 157, 243, 367, 472, 1120
Fnu4HI	GCNGC	3 cut(s)	320, 332, 850
FokI	GGATG	4 cut(s)	280, 283, 795, 902
FriOI	GRGCYC	3 cut(s)	193, 654, 1017
Fsp4HI	GCNGC	3 cut(s)	320, 332, 850
GlaI	GCGC	1 cut(s)	848
GluI	GCNGC	3 cut(s)	320, 332, 850
HaeII	RGCGCY	1 cut(s)	850
HapII	CCGG	2 cut(s)	300, 707
HhaI	GCGC	1 cut(s)	849
Hin1II	CATG	6 cut(s)	49, 161, 247, 371, 476, 1124
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HinfI	GANTC	4 cut(s)	236, 364, 469, 1117
HpaII	CCGG	2 cut(s)	300, 707
HphI	GGTGA	5 cut(s)	398, 436, 508, 1010, 1042
Hpy166II	GTNNAC	2 cut(s)	65, 453
Hpy188I	TCNGA	4 cut(s)	195, 339, 1074, 1109
Hpy8I	GTNNAC	2 cut(s)	65, 453
Hpy99I	CGWCG	1 cut(s)	448
HpyAV	CCTTC	8 cut(s)	82, 272, 424, 529, 629, 796, 989, 1104
HpyCH4III	ACNGT	2 cut(s)	133, 448
HpyCH4IV	ACGT	2 cut(s)	359, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	328, 608, 784
HpyF3I	CTNAG	3 cut(s)	192, 657, 1106
HpySE526I	ACGT	2 cut(s)	359, 824
Hsp92II	CATG	6 cut(s)	49, 161, 247, 371, 476, 1124
HspAI	GCGC	1 cut(s)	847
Kzo9I	GATC	5 cut(s)	15, 198, 388, 709, 1000
LmnI	GCTCC	2 cut(s)	763, 1020
Lsp1109I	GCAGC	3 cut(s)	306, 318, 836
LweI	GCATC	2 cut(s)	305, 541
MaeII	ACGT	2 cut(s)	359, 824
MaeIII	GTNAC	2 cut(s)	136, 346
MalI	GATC	5 cut(s)	17, 200, 390, 711, 1002
MboI	GATC	5 cut(s)	15, 198, 388, 709, 1000
MboII	GAAGA	4 cut(s)	25, 294, 439, 542
MflI	RGATCY	1 cut(s)	709
MhlI	GDGCHC	3 cut(s)	193, 654, 1017
MluCI	AATT	7 cut(s)	324, 460, 476, 818, 909, 1083, 1100
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	7 cut(s)	103, 167, 179, 215, 496, 777, 1031
MseI	TTAA	6 cut(s)	39, 51, 123, 576, 912, 1020
MslI	CAYNNNNRTG	2 cut(s)	696, 813
MspI	CCGG	2 cut(s)	300, 707
Mva1269I	GAATGC	1 cut(s)	604
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	3 cut(s)	328, 608, 784
NdeII	GATC	5 cut(s)	15, 198, 388, 709, 1000
NlaIII	CATG	6 cut(s)	49, 161, 247, 371, 476, 1124
NlaIV	GGNNCC	1 cut(s)	546
NruI	TCGCGA	1 cut(s)	624
NspI	RCATGY	1 cut(s)	247
PagI	TCATGA	3 cut(s)	45, 472, 1120
PciI	ACATGT	1 cut(s)	243
PctI	GAATGC	1 cut(s)	604
PfeI	GAWTC	4 cut(s)	236, 364, 469, 1117
PflFI	GACNNNGTC	1 cut(s)	448
PkrI	GCNGC	3 cut(s)	321, 333, 851
PscI	ACATGT	1 cut(s)	243
PshBI	ATTAAT	2 cut(s)	51, 576
PsiI	TTATAA	3 cut(s)	144, 354, 971
Psp124BI	GAGCTC	1 cut(s)	1017
PspN4I	GGNNCC	1 cut(s)	546
PstI	CTGCAG	1 cut(s)	854
PsuI	RGATCY	1 cut(s)	709
PsyI	GACNNNGTC	1 cut(s)	448
RruI	TCGCGA	1 cut(s)	624
RsaI	GTAC	3 cut(s)	34, 827, 1151
RsaNI	GTAC	3 cut(s)	33, 826, 1150
RseI	CAYNNNNRTG	2 cut(s)	696, 813
SacI	GAGCTC	1 cut(s)	1017
SaqAI	TTAA	6 cut(s)	39, 51, 123, 576, 912, 1020
SatI	GCNGC	3 cut(s)	320, 332, 850
Sau3AI	GATC	5 cut(s)	15, 198, 388, 709, 1000
SduI	GDGCHC	3 cut(s)	193, 654, 1017
SfaNI	GCATC	2 cut(s)	305, 541
SfcI	CTRYAG	1 cut(s)	850
SmiMI	CAYNNNNRTG	2 cut(s)	696, 813
Sse9I	AATT	7 cut(s)	324, 460, 476, 818, 909, 1083, 1100
SstI	GAGCTC	1 cut(s)	1017
TaaI	ACNGT	2 cut(s)	133, 448
TaiI	ACGT	2 cut(s)	362, 827
TasI	AATT	7 cut(s)	324, 460, 476, 818, 909, 1083, 1100
TatI	WGTACW	2 cut(s)	32, 1149
TfiI	GAWTC	4 cut(s)	236, 364, 469, 1117
Tru1I	TTAA	6 cut(s)	39, 51, 123, 576, 912, 1020
Tru9I	TTAA	6 cut(s)	39, 51, 123, 576, 912, 1020
TscAI	CASTG	1 cut(s)	31
TseI	GCWGC	3 cut(s)	319, 331, 849
TspGWI	ACGGA	2 cut(s)	1095, 1130
TspRI	CASTG	1 cut(s)	31
Tth111I	GACNNNGTC	1 cut(s)	448
VspI	ATTAAT	2 cut(s)	51, 576
XapI	RAATTY	1 cut(s)	1100
XceI	RCATGY	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.