Rh6CG144100

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
18771250 .. 18775499
4250 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG144100.1

Sequence Viewer

Length: 1206 bp
ATGCCTCGCCGTCGCCATTCTCCAAAACCCTCCCTGGAGCAACTCCTCGGCAGCGGCATTGCTCCGATTCGGAACGTTTTCGACTCGCTGGCTCGCGCCCGAGTGCGTTTGGGTGCCCAAAGCGGCGTCGTTTTGGAGTTGCTGACTAGGACTTGTAATGAATTGTTGAGTTTGTTTTCGAAATTGAATCGGACCGAGAGCGCTTGGGTTTTGTATGCTGGGATGTTTAGGTTGAAGATCGAGTCCAGTGTTTCTACTTTTAACATAATGATTAATGTGTTATGTAAAGAAGGGAAGTTGAAGATGGCAAAGGAGTTTCTTGGGTTTATGGAGATTTTGGGGATTAAGCCTACTGTTGTTACTTATAATACTATCATTCATGGGTTTTGTTTGAGAGGCAGAGTTGGACAGGCTCAGATGATCTTTAGTGCTATGAAAAGGAGAGGAGTTCAGCTGGATTCTTACACGTATGGATTGCTTATTGGTGGGATGTGTAAGGAGAGAAGGCTTGATGAAGCGTCTGGTCTTTTTGATAAAATGCTGGAAACTGGGCTGCTTCCGAGTGCTGTTACTTATAACACATTGATTGACCGTTATTGCAATAACGGTGTTCTAAACAAGGCTTTCGGATATAGAGATGAGGTGGTCATGAAGGGTATAATGCCGACGGTGTCAACTTGCAATTTTTTCATTCATGAATTGTTCATGGAAGGTAGGAAGCTGATTGTATGGTCTGGGAATGCAAAGAAAGCATTTATCCTTCGCGATGAAATGTTGATTAAAGGGATAGAGCCCACTAAGGAAATTTATACATCATGTATTTATGTTTTGAGTAAAAGGAAGAGAATGAATGAGGCAGATGACTTGTTTGTTGCCTTCAAAGTTCGAGACGAGATGTTGAGTAGAGGTTTCAATCCTACACTTCTAACATACAATGCTCTTATAAAAGGTCTATGCAAAAACCAAGAAGGTGACCTTGCTCAAGAACTCCTTAAAGAAATGAAAGGGCGATTCATGACTCCATGTATTTTACTTCTGATGATAGTGGTGTTCTCGAACCCAAATTCTGGTTCTGGAAGATTCTTTTGGTTACTTCTTGAAGATGACCTGACAAGCTTTGCCCAGGTGCTAAGAAGTTTAGCTTTTTGTGATTTGGACTCAGAAATCAATCATCTTTGGTACACTCATTTCGTGGCAAGTGGCTAA

Protein Analysis

401

Amino Acids

45.46

Weight (kDa)

9.26

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 51 - 96 9.4e-09 PPR repeat family
PPR_3 PF13812 75 - 127 2e-08 Pentatricopeptide repeat domain
PPR_1 PF12854 82 - 111 5.2e-07 PPR repeat
PPR_2 PF13041 83 - 130 2.4e-14 PPR repeat family
PPR_1 PF12854 114 - 146 4.8e-12 PPR repeat
PPR_2 PF13041 117 - 166 2.2e-17 PPR repeat family
PPR PF01535 120 - 150 1.4e-06 PPR repeat
PPR_3 PF13812 141 - 201 8.9e-10 Pentatricopeptide repeat domain
PPR_1 PF12854 148 - 180 1.8e-09 PPR repeat
PPR PF01535 155 - 184 4.8e-06 PPR repeat
PPR_2 PF13041 160 - 197 7.2e-10 PPR repeat family
PPR_1 PF12854 184 - 209 2e-08 PPR repeat
PPR_2 PF13041 187 - 234 1.4e-09 PPR repeat family
PPR_2 PF13041 269 - 320 1.5e-08 PPR repeat family
PPR_1 PF12854 302 - 335 5.3e-09 PPR repeat
PPR_2 PF13041 306 - 337 1.9e-06 PPR repeat family
PPR PF01535 310 - 336 2.9e-06 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 366, 576, 944
AccB1I GGYRCC 1 cut(s) 113
AccB7I CCANNNNNTGG 1 cut(s) 1067
AccII CGCG 2 cut(s) 96, 765
AciI CCGC 2 cut(s) 54, 123
AclI AACGTT 1 cut(s) 75
AcsI RAATTY 2 cut(s) 804, 1063
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 1181
AfeI AGCGCT 1 cut(s) 202
AfiI CCNNNNNNNGG 1 cut(s) 1067
AflIII ACRYGT 1 cut(s) 465
AgsI TTSAA 6 cut(s) 187, 235, 301, 880, 913, 1100
AjnI CCWGG 2 cut(s) 33, 1122
AjuI GAANNNNNNNTTGG 4 cut(s) 1054, 1069, 1086, 1101
AluBI AGCT 4 cut(s) 454, 721, 1116, 1142
AluI AGCT 4 cut(s) 454, 721, 1116, 1142
Alw26I GTCTC 1 cut(s) 882
Ama87I CYCGRG 1 cut(s) 99
Aor51HI AGCGCT 1 cut(s) 202
ApeKI GCWGC 2 cut(s) 51, 553
ApoI RAATTY 2 cut(s) 804, 1063
AseI ATTAAT 1 cut(s) 273
Asp700I GAANNNNTTC 1 cut(s) 77
AspLEI GCGC 2 cut(s) 98, 203
AspS9I GGNCC 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 983
AsuII TTCGAA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 99
AvaII GGWCC 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 118
BanI GGYRCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 795
BbvI GCAGC 2 cut(s) 63, 540
BccI CCATC 1 cut(s) 298
BciT130I CCWGG 2 cut(s) 35, 1124
BcoDI GTCTC 1 cut(s) 882
BfaI CTAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 204
BisI GCNGC 4 cut(s) 52, 55, 124, 554
BlsI GCNGC 4 cut(s) 53, 56, 125, 555
Bme1390I CCNGG 2 cut(s) 35, 1124
Bme18I GGWCC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 99
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 2 cut(s) 35, 1124
BmrI ACTGGG 1 cut(s) 558
BmuI ACTGGG 1 cut(s) 558
BpmI CTGGAG 1 cut(s) 56
Bpu14I TTCGAA 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 966
BsaAI YACGTR 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 3 cut(s) 33, 46, 1122
Bsc4I CCNNNNNNNGG 1 cut(s) 1067
Bse1I ACTGG 2 cut(s) 246, 553
Bse3DI GCAATG 1 cut(s) 57
BseBI CCWGG 2 cut(s) 35, 1124
BseDI CCNNGG 3 cut(s) 33, 46, 1122
BseGI GGATG 2 cut(s) 228, 495
BseLI CCNNNNNNNGG 1 cut(s) 1067
BseMI GCAATG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 428, 1173
BseNI ACTGG 2 cut(s) 246, 553
BseRI GAGGAG 2 cut(s) 35, 459
BseSI GKGCMC 1 cut(s) 118
BseXI GCAGC 2 cut(s) 63, 540
BseYI CCCAGC 1 cut(s) 218
Bsh1236I CGCG 2 cut(s) 96, 765
BshNI GGYRCC 1 cut(s) 113
BsiHKCI CYCGRG 1 cut(s) 99
BslI CCNNNNNNNGG 1 cut(s) 1067
BsmAI GTCTC 1 cut(s) 882
BsmBI CGTCTC 1 cut(s) 882
BsmI GAATGC 1 cut(s) 745
BsoBI CYCGRG 1 cut(s) 99
Bsp119I TTCGAA 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 118, 795
Bsp143I GATC 2 cut(s) 237, 420
Bsp68I TCGCGA 1 cut(s) 765
BspACI CCGC 2 cut(s) 54, 123
BspCNI CTCAG 2 cut(s) 427, 1172
BspFNI CGCG 2 cut(s) 96, 765
BspHI TCATGA 3 cut(s) 648, 694, 1014
BspLI GGNNCC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 179
BspT107I GGYRCC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 57
BsrI ACTGG 2 cut(s) 246, 553
BssECI CCNNGG 3 cut(s) 33, 46, 1122
BssMI GATC 2 cut(s) 237, 420
BssNI GRCGYC 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 35, 1124
Bst4CI ACNGT 4 cut(s) 355, 593, 608, 670
Bst6I CTCTTC 1 cut(s) 836
BstACI GRCGYC 1 cut(s) 126
BstBAI YACGTR 1 cut(s) 468
BstBI TTCGAA 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 90, 94
BstDEI CTNAG 4 cut(s) 414, 798, 1130, 1159
BstEII GGTNACC 1 cut(s) 971
BstF5I GGATG 2 cut(s) 228, 495
BstFNI CGCG 2 cut(s) 96, 765
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 2 cut(s) 98, 203
BstKTI GATC 2 cut(s) 240, 423
BstMAI GTCTC 1 cut(s) 882
BstMBI GATC 2 cut(s) 237, 420
BstMWI GCNNNNNNNGC 1 cut(s) 749
BstNI CCWGG 2 cut(s) 35, 1124
BstPI GGTNACC 1 cut(s) 971
BstSCI CCNGG 2 cut(s) 33, 1122
BstSLI GKGCMC 1 cut(s) 118
BstUI CGCG 2 cut(s) 96, 765
BstV1I GCAGC 2 cut(s) 63, 540
BtgZI GCGATG 1 cut(s) 780
BtsCI GGATG 2 cut(s) 228, 495
BtsIMutI CAGTG 1 cut(s) 253
BtuMI TCGCGA 1 cut(s) 765
Cac8I GCNNGC 2 cut(s) 90, 94
CciI TCATGA 3 cut(s) 648, 694, 1014
CfoI GCGC 2 cut(s) 98, 203
Cfr13I GGNCC 1 cut(s) 192
CpoI CGGWCCG 1 cut(s) 192
CseI GACGC 2 cut(s) 115, 507
Csp6I GTAC 1 cut(s) 1180
CspI CGGWCCG 1 cut(s) 192
CviAII CATG 7 cut(s) 380, 649, 695, 706, 816, 1015, 1023
CviQI GTAC 1 cut(s) 1180
DdeI CTNAG 4 cut(s) 414, 798, 1130, 1159
DpnI GATC 2 cut(s) 239, 422
DpnII GATC 2 cut(s) 237, 420
Eam1104I CTCTTC 1 cut(s) 836
EarI CTCTTC 1 cut(s) 836
Eco24I GRGCYC 1 cut(s) 795
Eco47I GGWCC 1 cut(s) 192
Eco47III AGCGCT 1 cut(s) 202
Eco88I CYCGRG 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 971
EcoO65I GGTNACC 1 cut(s) 971
EcoRII CCWGG 2 cut(s) 33, 1122
EcoT38I GRGCYC 1 cut(s) 795
Esp3I CGTCTC 1 cut(s) 882
FaeI CATG 7 cut(s) 383, 652, 698, 709, 819, 1018, 1026
FalI AAGNNNNNCTT 6 cut(s) 960, 992, 975, 1007, 1126, 1158
FatI CATG 7 cut(s) 379, 648, 694, 705, 815, 1014, 1022
Fnu4HI GCNGC 4 cut(s) 52, 55, 124, 554
FokI GGATG 2 cut(s) 235, 502
FriOI GRGCYC 1 cut(s) 795
Fsp4HI GCNGC 4 cut(s) 52, 55, 124, 554
FspBI CTAG 1 cut(s) 147
GlaI GCGC 2 cut(s) 97, 202
GluI GCNGC 4 cut(s) 52, 55, 124, 554
GsaI CCCAGC 1 cut(s) 222
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 204
HgaI GACGC 2 cut(s) 115, 507
HhaI GCGC 2 cut(s) 98, 203
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 7 cut(s) 383, 652, 698, 709, 819, 1018, 1026
Hin6I GCGC 2 cut(s) 96, 201
HinP1I GCGC 2 cut(s) 96, 201
HincII GTYRAC 1 cut(s) 675
HindII GTYRAC 1 cut(s) 675
HindIII AAGCTT 1 cut(s) 1114
HinfI GANTC 9 cut(s) 67, 83, 187, 242, 458, 1011, 1018, 1080, 1157
HphI GGTGA 1 cut(s) 983
Hpy166II GTNNAC 2 cut(s) 675, 1182
Hpy188I TCNGA 8 cut(s) 66, 72, 192, 417, 561, 629, 1038, 1162
Hpy188III TCNNGA 9 cut(s) 649, 695, 764, 887, 983, 1015, 1054, 1074, 1097
Hpy8I GTNNAC 2 cut(s) 675, 1182
Hpy99I CGWCG 3 cut(s) 15, 131, 670
HpyAV CCTTC 7 cut(s) 284, 498, 646, 704, 770, 886, 962
HpyCH4III ACNGT 4 cut(s) 355, 593, 608, 670
HpyCH4IV ACGT 2 cut(s) 75, 467
HpyCH4V TGCA 4 cut(s) 600, 681, 743, 957
HpyF10VI GCNNNNNNNGC 1 cut(s) 749
HpyF3I CTNAG 4 cut(s) 414, 798, 1130, 1159
HpySE526I ACGT 2 cut(s) 75, 467
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 7 cut(s) 383, 652, 698, 709, 819, 1018, 1026
HspAI GCGC 2 cut(s) 96, 201
Kzo9I GATC 2 cut(s) 237, 420
LmnI GCTCC 2 cut(s) 37, 67
Lsp1109I GCAGC 2 cut(s) 63, 540
MaeI CTAG 1 cut(s) 147
MaeII ACGT 2 cut(s) 75, 467
MaeIII GTNAC 4 cut(s) 358, 568, 971, 1089
MalI GATC 2 cut(s) 239, 422
MboI GATC 2 cut(s) 237, 420
MboII GAAGA 5 cut(s) 247, 313, 853, 1089, 1112
MhlI GDGCHC 2 cut(s) 118, 795
MluCI AATT 6 cut(s) 161, 182, 682, 698, 804, 1063
MlyI GAGTC 4 cut(s) 77, 251, 1012, 1151
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 8 cut(s) 15, 40, 56, 389, 437, 634, 847, 899
MroXI GAANNNNTTC 1 cut(s) 77
MseI TTAA 5 cut(s) 261, 273, 345, 780, 993
MspA1I CMGCKG 2 cut(s) 54, 454
MspR9I CCNGG 2 cut(s) 35, 1124
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 2 cut(s) 35, 1124
MvnI CGCG 2 cut(s) 96, 765
MwoI GCNNNNNNNGC 1 cut(s) 749
NdeII GATC 2 cut(s) 237, 420
NlaIII CATG 7 cut(s) 383, 652, 698, 709, 819, 1018, 1026
NlaIV GGNNCC 1 cut(s) 115
NmeAIII GCCGAG 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 971
NruI TCGCGA 1 cut(s) 765
NspV TTCGAA 1 cut(s) 179
PagI TCATGA 3 cut(s) 648, 694, 1014
PctI GAATGC 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 77
PfeI GAWTC 5 cut(s) 67, 187, 458, 1011, 1080
PflFI GACNNNGTC 1 cut(s) 670
PflMI CCANNNNNTGG 1 cut(s) 1067
PkrI GCNGC 4 cut(s) 53, 56, 125, 555
PleI GAGTC 4 cut(s) 77, 250, 1012, 1151
PpsI GAGTC 4 cut(s) 77, 250, 1012, 1151
Ppu21I YACGTR 1 cut(s) 468
PshBI ATTAAT 1 cut(s) 273
PsiI TTATAA 3 cut(s) 366, 576, 944
Psp1406I AACGTT 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 33, 1122
PspEI GGTNACC 1 cut(s) 971
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 2 cut(s) 33, 1122
PspN4I GGNNCC 1 cut(s) 115
PspPI GGNCC 1 cut(s) 192
PsyI GACNNNGTC 1 cut(s) 670
PvuII CAGCTG 1 cut(s) 454
RruI TCGCGA 1 cut(s) 765
RsaI GTAC 1 cut(s) 1181
RsaNI GTAC 1 cut(s) 1180
Rsr2I CGGWCCG 1 cut(s) 192
RsrII CGGWCCG 1 cut(s) 192
SaqAI TTAA 5 cut(s) 261, 273, 345, 780, 993
SatI GCNGC 4 cut(s) 52, 55, 124, 554
Sau3AI GATC 2 cut(s) 237, 420
Sau96I GGNCC 1 cut(s) 192
SchI GAGTC 4 cut(s) 77, 251, 1012, 1151
ScrFI CCNGG 2 cut(s) 35, 1124
SduI GDGCHC 2 cut(s) 118, 795
SfuI TTCGAA 1 cut(s) 179
SinI GGWCC 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 981
SmoI CTYRAG 1 cut(s) 981
Sse9I AATT 6 cut(s) 161, 182, 682, 698, 804, 1063
SsiI CCGC 2 cut(s) 54, 123
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 2 cut(s) 33, 1122
TaaI ACNGT 4 cut(s) 355, 593, 608, 670
TaiI ACGT 2 cut(s) 78, 470
TaqI TCGA 5 cut(s) 81, 179, 240, 886, 1055
TaqII GACCGA 1 cut(s) 209
TasI AATT 6 cut(s) 161, 182, 682, 698, 804, 1063
TauI GCSGC 2 cut(s) 57, 126
TfiI GAWTC 5 cut(s) 67, 187, 458, 1011, 1080
Tru1I TTAA 5 cut(s) 261, 273, 345, 780, 993
Tru9I TTAA 5 cut(s) 261, 273, 345, 780, 993
TscAI CASTG 1 cut(s) 253
TseFI GTSAC 1 cut(s) 971
TseI GCWGC 2 cut(s) 51, 553
Tsp45I GTSAC 1 cut(s) 971
TspRI CASTG 1 cut(s) 253
Tth111I GACNNNGTC 1 cut(s) 670
Van91I CCANNNNNTGG 1 cut(s) 1067
VpaK11BI GGWCC 1 cut(s) 192
VspI ATTAAT 1 cut(s) 273
XapI RAATTY 2 cut(s) 804, 1063
XmnI GAANNNNTTC 1 cut(s) 77
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.