Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Forward (+)

48631000 .. 48632268

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG375300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCCTCGCCGCCCTACCTTCCCCAAACCCCTCCTTACAGCTCCTGAAGCAGCTCGTCGGCAGCGGCATTGCTCCGTTTCGGGACGTTTTCGACTTGCTGACTCTTGCCCGACTGCGCTTGAGTCCGCAAAGCGGCGTCGTTTTGGACTTGCTGGTAGAGGTGTTCAGCCGGATTCTTACATGTATGGATTGCTTATTAGTGGGATGTGCAAGGAACGAAGACTTGCTGAAGCATCTGGTCTTTTTGATAAAATGCTGCAAATTGGGCTGCTTCCGATTGCTGTTACTTATAACACGTTGATTGACAGGGCTTTTGGTTATAGAGATGAGATGATACCGCGTAAGGGTGTTCTACCGGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGATAATGGGAATATGGAGCGTGCATTTTCGCTTTTGAGGCAGATGGATAAAATGAAGGTTCATCCAGATGAATTGACGTACAATACCCTAATGCAAGGGCGCTGCAGGGCAGGGAAAGTTCAGGAAGCTCGGGAACTTCTGGATGAGATAAAGACAAGGGGAATTAAGCGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

190

Amino Acids

21.57

Weight (kDa)

9.77

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	53 - 85	1.1e-09	PPR repeat
PPR_2	PF13041	57 - 102	3e-09	PPR repeat family
PPR_3	PF13812	113 - 164	3.1e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	115 - 147	8.3e-12	PPR repeat
PPR_2	PF13041	119 - 168	7.8e-17	PPR repeat family
PPR	PF01535	122 - 151	1.8e-07	PPR repeat
PPR_1	PF12854	152 - 182	2.4e-10	PPR repeat
PPR_2	PF13041	156 - 189	2.9e-08	PPR repeat family
PPR	PF01535	158 - 187	1.9e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
AccII	CGCG	1 cut(s)	340
AciI	CCGC	5 cut(s)	10, 64, 126, 133, 338
AclWI	GGATC	1 cut(s)	366
AcuI	CTGAAG	2 cut(s)	66, 249
AcyI	GRCGYC	1 cut(s)	136
AfaI	GTAC	1 cut(s)	476
AfiI	CCNNNNNNNGG	2 cut(s)	132, 344
AflIII	ACRYGT	2 cut(s)	180, 294
AgsI	TTSAA	1 cut(s)	373
AluBI	AGCT	3 cut(s)	41, 53, 524
AluI	AGCT	3 cut(s)	41, 53, 524
AlwI	GGATC	1 cut(s)	366
AlwNI	CAGNNNCTG	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	525
ApeKI	GCWGC	5 cut(s)	50, 61, 256, 268, 498
ArsI	GACNNNNNNTTYG	2 cut(s)	296, 328
AspLEI	GCGC	2 cut(s)	118, 498
AvaI	CYCGRG	1 cut(s)	525
BbsI	GAAGAC	1 cut(s)	226
BbvI	GCAGC	5 cut(s)	62, 73, 243, 255, 485
BccI	CCATC	2 cut(s)	380, 433
BfmI	CTRYAG	1 cut(s)	499
BfoI	RGCGCY	1 cut(s)	499
BisI	GCNGC	8 cut(s)	10, 51, 62, 65, 134, 257, 269, 499
BlsI	GCNGC	8 cut(s)	11, 52, 63, 66, 135, 258, 270, 500
BmeT110I	CYCGRG	1 cut(s)	525
BmsI	GCATC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	226
BpuEI	CTTGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 344
Bse3DI	GCAATG	1 cut(s)	67
BseGI	GGATG	3 cut(s)	210, 457, 544
BseLI	CCNNNNNNNGG	2 cut(s)	132, 344
BseMI	GCAATG	1 cut(s)	67
BseXI	GCAGC	5 cut(s)	62, 73, 243, 255, 485
Bsh1236I	CGCG	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	525
BsiSI	CCGG	2 cut(s)	170, 356
BslFI	GGGAC	1 cut(s)	96
BslI	CCNNNNNNNGG	2 cut(s)	132, 344
BsmFI	GGGAC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	525
Bsp143I	GATC	1 cut(s)	358
BspACI	CCGC	5 cut(s)	10, 64, 126, 133, 338
BspFNI	CGCG	1 cut(s)	340
BspMAI	CTGCAG	1 cut(s)	503
BspPI	GGATC	1 cut(s)	366
BsrDI	GCAATG	1 cut(s)	67
BssMI	GATC	1 cut(s)	358
BssNI	GRCGYC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	136
BstC8I	GCNNGC	1 cut(s)	417
BstF5I	GGATG	3 cut(s)	210, 457, 544
BstFNI	CGCG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	499
BstHHI	GCGC	2 cut(s)	118, 498
BstKTI	GATC	1 cut(s)	361
BstMBI	GATC	1 cut(s)	358
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 265, 433
BstNSI	RCATGY	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	499
BstUI	CGCG	1 cut(s)	340
BstV1I	GCAGC	5 cut(s)	62, 73, 243, 255, 485
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	358
BtsCI	GGATG	3 cut(s)	210, 457, 544
Cac8I	GCNNGC	1 cut(s)	417
CaiI	CAGNNNCTG	1 cut(s)	44
CfoI	GCGC	2 cut(s)	118, 498
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	475
CviAII	CATG	1 cut(s)	181
CviJI	RGCY	6 cut(s)	41, 53, 169, 268, 311, 524
CviKI_1	RGCY	6 cut(s)	41, 53, 169, 268, 311, 524
CviQI	GTAC	1 cut(s)	475
DpnI	GATC	1 cut(s)	360
DpnII	GATC	1 cut(s)	358
Eco57I	CTGAAG	2 cut(s)	66, 249
Eco88I	CYCGRG	1 cut(s)	525
FaeI	CATG	1 cut(s)	184
FaiI	YATR	5 cut(s)	182, 186, 291, 321, 410
FaqI	GGGAC	1 cut(s)	96
FatI	CATG	1 cut(s)	180
Fnu4HI	GCNGC	8 cut(s)	10, 51, 62, 65, 134, 257, 269, 499
FokI	GGATG	3 cut(s)	217, 444, 551
Fsp4HI	GCNGC	8 cut(s)	10, 51, 62, 65, 134, 257, 269, 499
GlaI	GCGC	2 cut(s)	117, 497
GluI	GCNGC	8 cut(s)	10, 51, 62, 65, 134, 257, 269, 499
HaeII	RGCGCY	1 cut(s)	499
HapII	CCGG	2 cut(s)	170, 356
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	118, 498
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	1 cut(s)	184
Hin6I	GCGC	2 cut(s)	116, 496
HinP1I	GCGC	2 cut(s)	116, 496
HinfI	GANTC	3 cut(s)	101, 122, 173
HpaII	CCGG	2 cut(s)	170, 356
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	6 cut(s)	44, 81, 461, 518, 527, 536
Hpy99I	CGWCG	2 cut(s)	60, 141
HpyAV	CCTTC	2 cut(s)	28, 445
HpyCH4IV	ACGT	3 cut(s)	85, 296, 473
HpyCH4V	TGCA	5 cut(s)	210, 259, 419, 490, 501
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 265, 433
HpySE526I	ACGT	3 cut(s)	85, 296, 473
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	1 cut(s)	184
HspAI	GCGC	2 cut(s)	116, 496
Kzo9I	GATC	1 cut(s)	358
LmnI	GCTCC	3 cut(s)	46, 77, 412
Lsp1109I	GCAGC	5 cut(s)	62, 73, 243, 255, 485
LweI	GCATC	1 cut(s)	242
MaeII	ACGT	3 cut(s)	85, 296, 473
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	360
MboI	GATC	1 cut(s)	358
MboII	GAAGA	1 cut(s)	231
MflI	RGATCY	1 cut(s)	358
MluCI	AATT	3 cut(s)	261, 467, 558
MlyI	GAGTC	2 cut(s)	95, 131
MnlI	CCTC	4 cut(s)	15, 41, 152, 426
MseI	TTAA	2 cut(s)	561, 571
MslI	CAYNNNNRTG	1 cut(s)	462
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	2 cut(s)	170, 356
MvnI	CGCG	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	47, 265, 433
NdeII	GATC	1 cut(s)	358
NlaIII	CATG	1 cut(s)	184
NspI	RCATGY	1 cut(s)	184
PciI	ACATGT	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	8 cut(s)	11, 52, 63, 66, 135, 258, 270, 500
PleI	GAGTC	2 cut(s)	95, 130
PpsI	GAGTC	2 cut(s)	95, 130
PscI	ACATGT	1 cut(s)	180
PsiI	TTATAA	1 cut(s)	291
PstI	CTGCAG	1 cut(s)	503
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	358
RsaI	GTAC	1 cut(s)	476
RsaNI	GTAC	1 cut(s)	475
RseI	CAYNNNNRTG	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	561, 571
SatI	GCNGC	8 cut(s)	10, 51, 62, 65, 134, 257, 269, 499
Sau3AI	GATC	1 cut(s)	358
SchI	GAGTC	2 cut(s)	95, 131
SetI	ASST	9 cut(s)	20, 43, 55, 88, 163, 299, 456, 476, 526
SfaNI	GCATC	1 cut(s)	242
SfcI	CTRYAG	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	261, 467, 558
SsiI	CCGC	5 cut(s)	10, 64, 126, 133, 338
TaiI	ACGT	3 cut(s)	88, 299, 476
TaqI	TCGA	1 cut(s)	91
TasI	AATT	3 cut(s)	261, 467, 558
TauI	GCSGC	3 cut(s)	12, 67, 136
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	2 cut(s)	561, 571
Tru9I	TTAA	2 cut(s)	561, 571
TseI	GCWGC	5 cut(s)	50, 61, 256, 268, 498
TspDTI	ATGAA	3 cut(s)	446, 464, 480
TspGWI	ACGGA	1 cut(s)	64
XceI	RCATGY	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.