RchiOBHm_Chr2g0106031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000571
Physical Location & Seq
Forward (+)
17320917 .. 17322601
1685 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48018

Sequence Viewer

Length: 315 bp
ATGGAGTTAAAGATGGGGCCACGACCATATTCTTGTCCCAAAAGGATTTCAGAGCCTGCAATTGAGATTTCTGCACACAAATTGGTGACTCTGGGCTTTGAATTTTGTCTTCTGGTGTTGAAATTTAACCGCGGTGAGTTCGAACAAGGCAATAGTGCAGCTTTTACTTTGGGTTGCCAGCGAATTGAAAGCAAGGCTCTTGGCTTTGACTCCAGGTGCTATAAGGAAGCCATACATAGACTATTGCTGACATCGAGAGTACAAAACAAGTACAAGAGCTGTGGTGTCATAAATTTCAGAGTTCCAGACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.85

Weight (kDa)

9.27

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 132
AciI CCGC 2 cut(s) 130, 132
AcsI RAATTY 3 cut(s) 101, 122, 292
AfaI GTAC 2 cut(s) 261, 272
AgsI TTSAA 3 cut(s) 101, 121, 188
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 2 cut(s) 161, 279
AluI AGCT 2 cut(s) 161, 279
AlwNI CAGNNNCTG 1 cut(s) 56
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 3 cut(s) 101, 122, 292
AspS9I GGNCC 1 cut(s) 17
AsuHPI GGTGA 2 cut(s) 97, 146
AsuII TTCGAA 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 170
BccI CCATC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 214
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 101
BpmI CTGGAG 1 cut(s) 196
Bpu14I TTCGAA 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 130
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 130
BseXI GCAGC 1 cut(s) 170
BsgI GTGCAG 2 cut(s) 57, 177
Bsh1236I CGCG 1 cut(s) 132
BshFI GGCC 1 cut(s) 19
BslFI GGGAC 1 cut(s) 21
BsmFI GGGAC 1 cut(s) 21
BsnI GGCC 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 141
BspACI CCGC 2 cut(s) 130, 132
BspANI GGCC 1 cut(s) 19
BspFNI CGCG 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 214
BstBI TTCGAA 1 cut(s) 141
BstC8I GCNNGC 2 cut(s) 57, 179
BstDSI CCRYGG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 132
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 212
BstUI CGCG 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 170
BstV2I GAAGAC 1 cut(s) 101
BsuRI GGCC 1 cut(s) 19
BtgI CCRYGG 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 57, 179
CaiI CAGNNNCTG 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 17
Cfr42I CCGCGG 1 cut(s) 133
Csp6I GTAC 2 cut(s) 260, 271
CspCI CAANNNNNGTGG 2 cut(s) 262, 297
CviJI RGCY 8 cut(s) 19, 55, 96, 161, 197, 204, 230, 279
CviKI_1 RGCY 8 cut(s) 19, 55, 96, 161, 197, 204, 230, 279
CviQI GTAC 2 cut(s) 260, 271
EcoRII CCWGG 1 cut(s) 212
FaiI YATR 5 cut(s) 28, 222, 233, 237, 290
FaqI GGGAC 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 159
Fsp4HI GCNGC 1 cut(s) 159
GluI GCNGC 1 cut(s) 159
GsuI CTGGAG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 19
HinfI GANTC 2 cut(s) 88, 209
HphI GGTGA 2 cut(s) 97, 146
Hpy188I TCNGA 2 cut(s) 52, 299
Hpy188III TCNNGA 2 cut(s) 255, 305
HpyCH4V TGCA 3 cut(s) 59, 74, 158
KspI CCGCGG 1 cut(s) 133
LpnPI CCDG 6 cut(s) 69, 77, 98, 191, 199, 226
Lsp1109I GCAGC 1 cut(s) 170
MaeIII GTNAC 1 cut(s) 85
MboII GAAGA 1 cut(s) 101
MfeI CAATTG 1 cut(s) 60
MluCI AATT 6 cut(s) 60, 80, 101, 122, 183, 292
MlyI GAGTC 2 cut(s) 82, 203
MseI TTAA 2 cut(s) 8, 126
MspA1I CMGCKG 1 cut(s) 132
MspR9I CCNGG 1 cut(s) 214
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 214
MvnI CGCG 1 cut(s) 132
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 85
NspV TTCGAA 1 cut(s) 141
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 2 cut(s) 82, 203
PpsI GAGTC 2 cut(s) 82, 203
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 1 cut(s) 17
PstNI CAGNNNCTG 1 cut(s) 56
RsaI GTAC 2 cut(s) 261, 272
RsaNI GTAC 2 cut(s) 260, 271
SacII CCGCGG 1 cut(s) 133
SaqAI TTAA 2 cut(s) 8, 126
SatI GCNGC 1 cut(s) 159
Sau96I GGNCC 1 cut(s) 17
SchI GAGTC 2 cut(s) 82, 203
ScrFI CCNGG 1 cut(s) 214
SetI ASST 3 cut(s) 163, 218, 281
Sfr303I CCGCGG 1 cut(s) 133
SfuI TTCGAA 1 cut(s) 141
SgrBI CCGCGG 1 cut(s) 133
Sse9I AATT 6 cut(s) 60, 80, 101, 122, 183, 292
SsiI CCGC 2 cut(s) 130, 132
StyD4I CCNGG 1 cut(s) 212
TaqI TCGA 2 cut(s) 141, 254
TasI AATT 6 cut(s) 60, 80, 101, 122, 183, 292
TatI WGTACW 2 cut(s) 259, 270
Tru1I TTAA 2 cut(s) 8, 126
Tru9I TTAA 2 cut(s) 8, 126
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 1 cut(s) 85
XapI RAATTY 3 cut(s) 101, 122, 292
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.