Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000861.1

Orthogroup ID

OG0000571

Physical Location & Seq

Genomic Coordinates Reverse (-)

252937 .. 253442

Gene Structure 506 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000861.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgaatgaggcagatgacttgtttgagaagatactgcataagggtgttctaccggatcttgtgatgttcaatgccttgattgatggtcattgtgctgatgggaatatggagcgtgcatttttgcttttgagggagatggataaaatgaagatgaagcgaaggggaattaagcctgattacattagttacaacaccctcattagtggacatagtaaacgaggtgatatgaatgatgccttcaaagttcgagacgagatgttgagtataggtttcaatcctacacttctaacatacaatgttcttataaaaggtctacgcaaaaaccaagaaggtgatcttgctcaagagctccttaaagaaatggtgagcagagggattactcccgatgacagcacatattactctccgattgactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3 PPR_long

Protein Analysis

138

Amino Acids

15.77

Weight (kDa)

5.62

Isoelectric Point (pI)

26.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000571)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15630
fragaria_vesca	FvH4_2g07360
malus_domestica	MD02G1234600.v1.1
prunus_persica	Prupe.8G019300_v2.0.a1
pyrus_communis	pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis	RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata	RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora	Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa	Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha	Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana	Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	313
AclWI	GGATC	1 cut(s)	63
AgsI	TTSAA	3 cut(s)	70, 241, 274
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	63
AsuHPI	GGTGA	3 cut(s)	233, 344, 376
BanII	GRGCYC	1 cut(s)	351
Bbv12I	GWGCWC	1 cut(s)	351
BccI	CCATC	3 cut(s)	77, 92, 130
BcoDI	GTCTC	1 cut(s)	243
BmsI	GCATC	1 cut(s)	223
BpuEI	CTTGAG	1 cut(s)	327
BsaWI	WCCGGW	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	243
BsmBI	CGTCTC	1 cut(s)	243
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	55, 334
BspPI	GGATC	1 cut(s)	63
BssMI	GATC	2 cut(s)	55, 334
BstC8I	GCNNGC	1 cut(s)	114
BstKTI	GATC	2 cut(s)	58, 337
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	2 cut(s)	55, 334
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
Cac8I	GCNNGC	1 cut(s)	114
CviJI	RGCY	2 cut(s)	172, 349
CviKI_1	RGCY	2 cut(s)	172, 349
DpnI	GATC	2 cut(s)	57, 336
DpnII	GATC	2 cut(s)	55, 334
Ecl136II	GAGCTC	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	351
Eco53kI	GAGCTC	1 cut(s)	349
EcoICRI	GAGCTC	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	351
Esp3I	CGTCTC	1 cut(s)	243
FaiI	YATR	8 cut(s)	39, 107, 210, 227, 266, 292, 305, 397
FalI	AAGNNNNNCTT	4 cut(s)	321, 353, 336, 368
FblI	GTMKAC	1 cut(s)	313
FriOI	GRGCYC	1 cut(s)	351
HapII	CCGG	1 cut(s)	53
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	233, 344, 376
Hpy166II	GTNNAC	3 cut(s)	206, 215, 314
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	3 cut(s)	248, 344, 383
Hpy8I	GTNNAC	3 cut(s)	206, 215, 314
HpyAV	CCTTC	3 cut(s)	153, 247, 323
HpyCH4V	TGCA	2 cut(s)	37, 116
Kzo9I	GATC	2 cut(s)	55, 334
LmnI	GCTCC	2 cut(s)	109, 354
LpnPI	CCDG	2 cut(s)	66, 186
LweI	GCATC	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	57, 336
MboI	GATC	2 cut(s)	55, 334
MboII	GAAGA	2 cut(s)	40, 160
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	1 cut(s)	165
MnlI	CCTC	4 cut(s)	123, 206, 212, 365
MseI	TTAA	2 cut(s)	168, 354
MslI	CAYNNNNRTG	1 cut(s)	42
MspI	CCGG	1 cut(s)	53
NdeII	GATC	2 cut(s)	55, 334
PsiI	TTATAA	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	351
PsuI	RGATCY	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	42
SacI	GAGCTC	1 cut(s)	351
SaqAI	TTAA	2 cut(s)	168, 354
Sau3AI	GATC	2 cut(s)	55, 334
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	5 cut(s)	223, 271, 313, 334, 351
SfaNI	GCATC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	42
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	351
TaqI	TCGA	1 cut(s)	247
TasI	AATT	1 cut(s)	165
Tru1I	TTAA	2 cut(s)	168, 354
Tru9I	TTAA	2 cut(s)	168, 354
TspDTI	ATGAA	4 cut(s)	17, 161, 167, 242
XmiI	GTMKAC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.