RchiOBHm_Chr6g0260151

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000571
Physical Location & Seq
Reverse (-)
15255201 .. 15257459
2259 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23328

Sequence Viewer

Length: 576 bp
ATGCCGACGGTGTCAACTTACAATTTGTTGATTCATGAATTGTTTATGGAAGGTAGGGTGAGCGAAGCTGATTGTATGGTTCAAGAAATGGAAGAGAAGGGAATGGTTCCTGATGCCATTACGTATAATATCCTGATTAATGGCTATTGCAGGTCTGGGAATGCAAAGAAAGCGTCTATCCTTCGTGATGAAATGTTGAGTAAAGGGATAGAACCCACTAAGGAAACTTATACATCGCTTATTTATGTTTTGAGTAAAAGGAAGAGAATGAATGAGGCAGATGACTTGTTTGAGAAGATACTGCGTAAGGGTGTTCTGCTGGATCTTGTGATGTTCAATGCCTTGATTGATGGTCATTGTGCTAATGGGAATATGGAGCGTGCATTTTCGCTTTTGACGGAGATGGATAAAATGAAGGTTAATCCAGATGAAGTCACTTACAATACCCTAATGCAAGGGCGCTGCAGGACAGGGAGAGTTGAGGAAGCTCGAGAACTCGTGGATGAGATGAAGAGAAGGGGAATTAAGCCTGATTACATTAGTTACAACACCCTCATTAGTGGACATAGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.85

Weight (kDa)

6.0

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 2 - 51 1.3e-16 PPR repeat family
PPR_long PF17177 21 - 87 3.8e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 27 - 86 2.8e-10 Pentatricopeptide repeat domain
TPR_24 PF23276 30 - 133 1.4e-10 Fungal tetratrico peptide repeats
PPR_1 PF12854 33 - 65 1.1e-12 PPR repeat
PPR_2 PF13041 37 - 85 8.5e-16 PPR repeat family
PPR PF01535 40 - 70 7.9e-09 PPR repeat
PPR PF01535 76 - 105 7.9e-06 PPR repeat
PPR_long PF17177 77 - 185 2.1e-07 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 96 - 152 1.2e-10 Pentatricopeptide repeat domain
TPR_24 PF23276 99 - 188 6.6e-08 Fungal tetratrico peptide repeats
PPR_1 PF12854 103 - 135 7.6e-10 PPR repeat
PPR_2 PF13041 108 - 156 8.3e-17 PPR repeat family
PPR PF01535 110 - 139 2.4e-07 PPR repeat
PPR_1 PF12854 140 - 171 3.1e-12 PPR repeat
PPR_3 PF13812 141 - 187 2.2e-08 Pentatricopeptide repeat domain
PPR_2 PF13041 142 - 191 7.5e-19 PPR repeat family
PPR PF01535 145 - 175 7.5e-09 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000571)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G15630
fragaria_vesca FvH4_2g07360
malus_domestica MD02G1234600.v1.1
prunus_persica Prupe.8G019300_v2.0.a1
pyrus_communis pycom02g20240 pycom05g06440 pycom10g06900
rosa_chinensis RchiOBHm_Chr2g0106031 RchiOBHm_Chr2g0124301 RchiOBHm_Chr2g0124591 RchiOBHm_Chr5g0034701 RchiOBHm_Chr6g0257571 RchiOBHm_Chr6g0259961 RchiOBHm_Chr6g0260151 RchiOBHm_Chr6g0260161 RchiOBHm_Chr6g0260361 RchiOBHm_Chr6g0260391 RchiOBHm_Chr6g0260531 RchiOBHm_Chr6g0260541 RchiOBHm_Chr6g0260661 RchiOBHm_Chr6g0260761 RchiOBHm_Chr6g0266771 RchiOBHm_Chr7g0210581 RchiOBHm_Chr7g0225201 RchiOBHm_Chr7g0225221
rosa_laevigata RLG00000001833 RLG00000001834 RLG00000014081 RLG00000014490 RLG00000014495 RLG00000015073 RLG00000034098
rosa_multiflora Rmu_sc0000414.1_g000008 Rmu_sc0000546.1_g000067 Rmu_sc0000588.1_g000057 Rmu_sc0000861.1_g000058 Rmu_sc0000861.1_g000059 Rmu_sc0002766.1_g000023 Rmu_sc0002968.1_g000001 Rmu_sc0003786.1_g000024 Rmu_sc0005472.1_g000021 Rmu_sc0010278.1_g000006 Rmu_sc0014629.1_g000014 Rmu_sc0036189.1_g000001
rosa_roxburghii Rroxscaffold_3G00234010 Rroxscaffold_5G00368980 Rroxscaffold_7G00201460 Rroxscaffold_7G00207310 Rroxscaffold_7G00207360 Rroxscaffold_7G00207370 Rroxscaffold_7G00210730
rosa_rugosa Rorug05G0196300 Rorug05G0359600 Rorug05G0591800 Rorug05G0592300 Rorug05G0592700 Rorug06G0023500 Rorug07G0228100
rosa_samantha Rh2CG188200 Rh2DG333800 Rh4DG026900 Rh5CG249600 Rh6BG104200 Rh6BG104500 Rh6BG105900 Rh6BG106000 Rh6CG076700 Rh6CG097500 Rh6CG098200 Rh6CG100800 Rh6CG101000 Rh6CG101200 Rh6CG102400 Rh6CG144100 Rh6DG093200 Rh7AG375200 Rh7AG375300 Rh7BG360300
rosa_wichuraiana Rw0G020720 Rw5G026430 Rw6G009370 Rw6G009450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 141
AclWI GGATC 1 cut(s) 330
AgsI TTSAA 2 cut(s) 83, 337
AluBI AGCT 2 cut(s) 68, 488
AluI AGCT 2 cut(s) 68, 488
AlwI GGATC 1 cut(s) 330
Ama87I CYCGRG 1 cut(s) 489
ApeKI GCWGC 1 cut(s) 462
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
AseI ATTAAT 1 cut(s) 138
AspLEI GCGC 1 cut(s) 462
AsuHPI GGTGA 1 cut(s) 70
AvaI CYCGRG 1 cut(s) 489
BauI CACGAG 1 cut(s) 497
BbvI GCAGC 1 cut(s) 449
BccI CCATC 2 cut(s) 344, 397
BfmI CTRYAG 1 cut(s) 463
BfoI RGCGCY 1 cut(s) 463
BfuAI ACCTGC 1 cut(s) 141
BisI GCNGC 1 cut(s) 463
BlsI GCNGC 1 cut(s) 464
BmeT110I CYCGRG 1 cut(s) 489
BmiI GGNNCC 1 cut(s) 108
BmsI GCATC 1 cut(s) 103
BsaAI YACGTR 1 cut(s) 123
BseGI GGATG 1 cut(s) 508
BseXI GCAGC 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 489
BsmI GAATGC 1 cut(s) 166
BsoBI CYCGRG 1 cut(s) 489
Bsp143I GATC 1 cut(s) 322
BspHI TCATGA 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 467
BspMI ACCTGC 1 cut(s) 141
BspPI GGATC 1 cut(s) 330
BssMI GATC 1 cut(s) 322
BssSI CACGAG 1 cut(s) 497
Bst2BI CACGAG 1 cut(s) 497
Bst4CI ACNGT 1 cut(s) 10
Bst6I CTCTTC 3 cut(s) 87, 257, 506
BstBAI YACGTR 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 508
BstH2I RGCGCY 1 cut(s) 463
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 1 cut(s) 325
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstSFI CTRYAG 1 cut(s) 463
BstSNI TACGTA 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 508
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 381
CciI TCATGA 1 cut(s) 34
CfoI GCGC 1 cut(s) 462
CseI GACGC 1 cut(s) 162
CviAII CATG 1 cut(s) 35
CviJI RGCY 4 cut(s) 68, 144, 488, 529
CviKI_1 RGCY 4 cut(s) 68, 144, 488, 529
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
Eam1104I CTCTTC 3 cut(s) 87, 257, 506
EarI CTCTTC 3 cut(s) 87, 257, 506
Eco105I TACGTA 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 489
FaeI CATG 1 cut(s) 38
FaiI YATR 8 cut(s) 36, 47, 77, 126, 231, 246, 374, 567
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 463
FokI GGATG 1 cut(s) 515
Fsp4HI GCNGC 1 cut(s) 463
GlaI GCGC 1 cut(s) 461
GluI GCNGC 1 cut(s) 463
HaeII RGCGCY 1 cut(s) 463
HgaI GACGC 1 cut(s) 162
HhaI GCGC 1 cut(s) 462
Hin1II CATG 1 cut(s) 38
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 1 cut(s) 31
HphI GGTGA 1 cut(s) 70
Hpy166II GTNNAC 2 cut(s) 15, 563
Hpy188III TCNNGA 7 cut(s) 35, 83, 110, 133, 185, 425, 491
Hpy8I GTNNAC 2 cut(s) 15, 563
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 44, 91, 191, 409, 510
HpyCH4III ACNGT 1 cut(s) 10
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 5 cut(s) 150, 164, 383, 454, 465
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 1 cut(s) 38
HspAI GCGC 1 cut(s) 460
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 9 cut(s) 123, 136, 141, 146, 305, 438, 451, 456, 543
Lsp1109I GCAGC 1 cut(s) 449
LweI GCATC 1 cut(s) 103
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 433, 542
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 4 cut(s) 104, 274, 307, 523
MflI RGATCY 1 cut(s) 322
MluCI AATT 3 cut(s) 22, 38, 522
MnlI CCTC 3 cut(s) 268, 475, 563
MseI TTAA 3 cut(s) 138, 420, 525
Mva1269I GAATGC 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 1 cut(s) 322
NlaIII CATG 1 cut(s) 38
NlaIV GGNNCC 1 cut(s) 108
NmuCI GTSAC 1 cut(s) 433
PaeR7I CTCGAG 1 cut(s) 489
PagI TCATGA 1 cut(s) 34
PctI GAATGC 1 cut(s) 166
PfeI GAWTC 1 cut(s) 31
PflFI GACNNNGTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 464
Ppu21I YACGTR 1 cut(s) 123
PshBI ATTAAT 1 cut(s) 138
PspN4I GGNNCC 1 cut(s) 108
PstI CTGCAG 1 cut(s) 467
PsuI RGATCY 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 10
SaqAI TTAA 3 cut(s) 138, 420, 525
SatI GCNGC 1 cut(s) 463
Sau3AI GATC 1 cut(s) 322
SetI ASST 6 cut(s) 55, 70, 125, 155, 420, 490
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 463
Sfr274I CTCGAG 1 cut(s) 489
SlaI CTCGAG 1 cut(s) 489
SmlI CTYRAG 1 cut(s) 489
SmoI CTYRAG 1 cut(s) 489
SnaBI TACGTA 1 cut(s) 123
Sse9I AATT 3 cut(s) 22, 38, 522
TaaI ACNGT 1 cut(s) 10
TaiI ACGT 1 cut(s) 125
TaqI TCGA 1 cut(s) 490
TasI AATT 3 cut(s) 22, 38, 522
TfiI GAWTC 1 cut(s) 31
Tru1I TTAA 3 cut(s) 138, 420, 525
Tru9I TTAA 3 cut(s) 138, 420, 525
TseFI GTSAC 1 cut(s) 433
TseI GCWGC 1 cut(s) 462
Tsp45I GTSAC 1 cut(s) 433
TspDTI ATGAA 7 cut(s) 23, 51, 204, 284, 428, 444, 524
TspGWI ACGGA 1 cut(s) 413
Tth111I GACNNNGTC 1 cut(s) 10
VspI ATTAAT 1 cut(s) 138
XhoI CTCGAG 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.