MD13G1211100.v1.1

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Forward (+)
19678886 .. 19679834
949 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1211100.v1.1.491

Sequence Viewer

Length: 543 bp
ATGAAGTTGGGGAAGTTGTTGTTCGAGTTGTTATCGGAGGCTCTTGGCCTAAAGCCAAGTCGCTTGAATGACATGGACTGTAGTGAGGGGCTTCTGATTCTAGGTCATTACTATCCTTCTTGTCCACAGCCAGAGTTGACTATGGGCACAAGCAAGCACGCCGACAATGACTTTCTCACAGTGCTTTTGCAAGATCATATTGGAGGTCTTCAAGTTCTTCATCAGAGAAAGTGGGTTGATGTTCCGCCTGTGCCTGGTGCTCTTGTGGTTAACATTGGAGACCTTTTACAGCTTATATCAAATGATAGATTCAAGAGCATACAACACAGGGTACAAGCAAACTGTGTAGGTCCAAGGATATCTGTTGCGAGCTTCTTCTGCACAGGGATGTTACCGTCAACAAAGCTCTATGGACCCATCAAGGAGTTAGTATCAGAAGACAATCCTCCAAAGTATAAGGAGACCACTGTGAGGGACTACGTTGCTTACTTTAACAACAAAGGCCTTGATGGCACATCTGCCTTGTCACATTTTAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

181

Amino Acids

19.97

Weight (kDa)

7.0

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 33 - 127 7.8e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 245
AfaI GTAC 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 254, 471
AgsI TTSAA 3 cut(s) 67, 212, 313
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 4 cut(s) 292, 372, 406, 538
AluI AGCT 4 cut(s) 292, 372, 406, 538
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 273, 455
AoxI GGCC 2 cut(s) 46, 502
AspS9I GGNCC 2 cut(s) 350, 413
AvaII GGWCC 2 cut(s) 350, 413
BaeGI GKGCMC 1 cut(s) 149
BbsI GAAGAC 2 cut(s) 200, 444
Bbv12I GWGCWC 1 cut(s) 262
BccI CCATC 2 cut(s) 425, 503
BciT130I CCWGG 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 273, 455
BfaI CTAG 1 cut(s) 101
BfmI CTRYAG 1 cut(s) 79
BglI GCCNNNNNGGC 1 cut(s) 510
Bme1390I CCNGG 1 cut(s) 255
Bme18I GGWCC 2 cut(s) 350, 413
BmgT120I GGNCC 2 cut(s) 350, 413
BmiI GGNNCC 1 cut(s) 415
BmrFI CCNGG 1 cut(s) 255
BpiI GAAGAC 2 cut(s) 200, 444
BsaI GGTCTC 2 cut(s) 273, 455
BsaJI CCNNGG 1 cut(s) 353
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 471
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 1 cut(s) 353
BseGI GGATG 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 254, 471
BseSI GKGCMC 1 cut(s) 149
BsgI GTGCAG 1 cut(s) 364
BshFI GGCC 2 cut(s) 48, 504
BsiHKAI GWGCWC 1 cut(s) 262
BslFI GGGAC 1 cut(s) 488
BslI CCNNNNNNNGG 2 cut(s) 254, 471
BsmAI GTCTC 2 cut(s) 273, 455
BsmFI GGGAC 1 cut(s) 488
BsnI GGCC 2 cut(s) 48, 504
Bso31I GGTCTC 2 cut(s) 273, 455
Bsp1286I GDGCHC 2 cut(s) 149, 262
Bsp143I GATC 1 cut(s) 193
BspACI CCGC 1 cut(s) 245
BspANI GGCC 2 cut(s) 48, 504
BspLI GGNNCC 1 cut(s) 415
BspTNI GGTCTC 2 cut(s) 273, 455
BssECI CCNNGG 1 cut(s) 353
BssMI GATC 1 cut(s) 193
BssT1I CCWWGG 1 cut(s) 353
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 5 cut(s) 80, 181, 344, 396, 469
BstC8I GCNNGC 3 cut(s) 155, 159, 370
BstF5I GGATG 1 cut(s) 393
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 2 cut(s) 273, 455
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 378, 510
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 1 cut(s) 253
BstSFI CTRYAG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 149
BstV2I GAAGAC 2 cut(s) 200, 444
BsuRI GGCC 2 cut(s) 48, 504
BtsCI GGATG 1 cut(s) 393
BtsIMutI CAGTG 2 cut(s) 186, 465
Cac8I GCNNGC 3 cut(s) 155, 159, 370
Cfr13I GGNCC 2 cut(s) 350, 413
Csp6I GTAC 1 cut(s) 332
CviAII CATG 1 cut(s) 73
CviQI GTAC 1 cut(s) 332
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
EciI GGCGGA 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 353
Eco147I AGGCCT 1 cut(s) 504
Eco31I GGTCTC 2 cut(s) 273, 455
Eco32I GATATC 1 cut(s) 360
Eco47I GGWCC 2 cut(s) 350, 413
EcoRII CCWGG 1 cut(s) 253
EcoRV GATATC 1 cut(s) 360
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
FaeI CATG 1 cut(s) 76
FaiI YATR 7 cut(s) 74, 143, 198, 296, 320, 411, 456
FaqI GGGAC 1 cut(s) 488
FatI CATG 1 cut(s) 72
FokI GGATG 1 cut(s) 400
FspBI CTAG 1 cut(s) 101
HaeIII GGCC 2 cut(s) 48, 504
Hin1II CATG 1 cut(s) 76
HincII GTYRAC 3 cut(s) 138, 271, 399
HindII GTYRAC 3 cut(s) 138, 271, 399
HindIII AAGCTT 1 cut(s) 536
HinfI GANTC 2 cut(s) 97, 309
HpaI GTTAAC 1 cut(s) 271
Hpy166II GTNNAC 4 cut(s) 125, 138, 271, 399
Hpy188I TCNGA 4 cut(s) 37, 96, 225, 436
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 4 cut(s) 125, 138, 271, 399
HpyAV CCTTC 1 cut(s) 126
HpyCH4III ACNGT 5 cut(s) 80, 181, 344, 396, 469
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 2 cut(s) 190, 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 378, 510
HpySE526I ACGT 1 cut(s) 480
Hsp92II CATG 1 cut(s) 76
KspAI GTTAAC 1 cut(s) 271
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 6 cut(s) 144, 240, 261, 267, 313, 369
MaeI CTAG 1 cut(s) 101
MaeII ACGT 1 cut(s) 480
MaeIII GTNAC 2 cut(s) 390, 525
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 4 cut(s) 200, 209, 367, 449
MhlI GDGCHC 2 cut(s) 149, 262
MnlI CCTC 5 cut(s) 31, 79, 197, 456, 465
MseI TTAA 4 cut(s) 270, 492, 534, 541
MslI CAYNNNNRTG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 378, 510
NdeII GATC 1 cut(s) 193
NlaIII CATG 1 cut(s) 76
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 525
PceI AGGCCT 1 cut(s) 504
PfeI GAWTC 2 cut(s) 97, 309
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 2 cut(s) 350, 413
RsaI GTAC 1 cut(s) 333
RsaNI GTAC 1 cut(s) 332
RseI CAYNNNNRTG 1 cut(s) 386
SaqAI TTAA 4 cut(s) 270, 492, 534, 541
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 2 cut(s) 350, 413
ScrFI CCNGG 1 cut(s) 255
SduI GDGCHC 2 cut(s) 149, 262
SetI ASST 9 cut(s) 106, 208, 285, 294, 352, 374, 408, 483, 540
SfcI CTRYAG 1 cut(s) 79
SinI GGWCC 2 cut(s) 350, 413
SmiMI CAYNNNNRTG 1 cut(s) 386
SseBI AGGCCT 1 cut(s) 504
SsiI CCGC 1 cut(s) 245
SspMI CTAG 1 cut(s) 101
StuI AGGCCT 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 253
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 5 cut(s) 80, 181, 344, 396, 469
TaiI ACGT 1 cut(s) 483
TaqI TCGA 1 cut(s) 24
TfiI GAWTC 2 cut(s) 97, 309
Tru1I TTAA 4 cut(s) 270, 492, 534, 541
Tru9I TTAA 4 cut(s) 270, 492, 534, 541
TscAI CASTG 2 cut(s) 186, 472
TseFI GTSAC 1 cut(s) 525
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 2 cut(s) 17, 209
TspRI CASTG 2 cut(s) 186, 472
VpaK11BI GGWCC 2 cut(s) 350, 413
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.