RLG00000009839

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
58764061 .. 58765369
1309 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009839

Sequence Viewer

Length: 417 bp
ATGTTCTTTCACTCTCACGACCCAAATTTGCAGCTTAGACCGTCGCACAATTTTCAGATGCAACAAGTTCACTGTCGAGATAGCAGTGAGGGGCTTCTGGTTTTAGGCCATTACTATCCTGCTTGTCCACAGCCAGAATTAACAATAGGCACAAGCAAGCATGCAGATAATAACTTCATCTCTGTCCTCCTGCAAGATAATATTGGTGGTCTTCAAGTCCTTCATCAGAACAACTGGGTTGATGTACCCCCTGTGTCGGGGGCTCTTGTGGTTAACATTGGAGATCTTCTGCAGCATATATCAAATGATAGATTCAAGAGTGTAGAGCACAGGGTACTGGCAAACCATAGAGGTCCTAGGGTATCAGTTGCAAGCTTTTTCAGCACAGGAATGCTGCCATCGACAAAGCTCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

139

Amino Acids

15.45

Weight (kDa)

6.78

Isoelectric Point (pI)

51.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 35 - 128 4.6e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 2 cut(s) 246, 336
AfiI CCNNNNNNNGG 2 cut(s) 256, 257
AgsI TTSAA 2 cut(s) 215, 316
AluBI AGCT 3 cut(s) 34, 375, 409
AluI AGCT 3 cut(s) 34, 375, 409
Alw21I GWGCWC 1 cut(s) 330
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 3 cut(s) 31, 292, 394
ApoI RAATTY 1 cut(s) 25
AspA2I CCTAGG 1 cut(s) 356
AspS9I GGNCC 1 cut(s) 353
AvaII GGWCC 1 cut(s) 353
AvrII CCTAGG 1 cut(s) 356
BanII GRGCYC 1 cut(s) 265
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 330
BbvI GCAGC 3 cut(s) 43, 304, 381
BccI CCATC 1 cut(s) 406
BfaI CTAG 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 290
BglII AGATCT 1 cut(s) 283
BisI GCNGC 3 cut(s) 32, 293, 395
BlnI CCTAGG 1 cut(s) 356
BlsI GCNGC 3 cut(s) 33, 294, 396
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 1 cut(s) 353
BmrI ACTGGG 1 cut(s) 244
BmsI GCATC 1 cut(s) 48
BmuI ACTGGG 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 356
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 257
Bse1I ACTGG 2 cut(s) 239, 342
BseDI CCNNGG 1 cut(s) 356
BseLI CCNNNNNNNGG 2 cut(s) 256, 257
BseNI ACTGG 2 cut(s) 239, 342
BseXI GCAGC 3 cut(s) 43, 304, 381
BshFI GGCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 256, 257
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 1 cut(s) 108
Bsp1286I GDGCHC 2 cut(s) 265, 330
Bsp143I GATC 1 cut(s) 283
BspANI GGCC 1 cut(s) 108
BspMAI CTGCAG 1 cut(s) 294
BsrI ACTGG 2 cut(s) 239, 342
BssECI CCNNGG 1 cut(s) 356
BssMI GATC 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 42, 74
BstC8I GCNNGC 3 cut(s) 158, 162, 373
BstDEI CTNAG 1 cut(s) 35
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 164
BstSFI CTRYAG 1 cut(s) 290
BstV1I GCAGC 3 cut(s) 43, 304, 381
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 283
BstYI RGATCY 1 cut(s) 283
BsuRI GGCC 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 70, 91
Cac8I GCNNGC 3 cut(s) 158, 162, 373
Cfr13I GGNCC 1 cut(s) 353
Csp6I GTAC 2 cut(s) 245, 335
CviAII CATG 1 cut(s) 161
CviJI RGCY 7 cut(s) 34, 94, 108, 133, 263, 375, 409
CviKI_1 RGCY 7 cut(s) 34, 94, 108, 133, 263, 375, 409
CviQI GTAC 2 cut(s) 245, 335
DdeI CTNAG 1 cut(s) 35
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eco130I CCWWGG 1 cut(s) 356
Eco24I GRGCYC 1 cut(s) 265
Eco47I GGWCC 1 cut(s) 353
EcoO109I RGGNCCY 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 356
FaeI CATG 1 cut(s) 164
FaiI YATR 4 cut(s) 162, 297, 299, 348
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 3 cut(s) 32, 293, 395
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 3 cut(s) 32, 293, 395
FspBI CTAG 1 cut(s) 357
GluI GCNGC 3 cut(s) 32, 293, 395
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 1 cut(s) 164
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 373
HinfI GANTC 1 cut(s) 312
HpaI GTTAAC 1 cut(s) 274
Hpy166II GTNNAC 3 cut(s) 70, 128, 274
Hpy188I TCNGA 2 cut(s) 57, 228
Hpy188III TCNNGA 3 cut(s) 17, 77, 316
Hpy8I GTNNAC 3 cut(s) 70, 128, 274
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 42, 74
HpyCH4V TGCA 6 cut(s) 31, 61, 164, 193, 292, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 381
HpyF3I CTNAG 1 cut(s) 35
Hsp92II CATG 1 cut(s) 164
KspAI GTTAAC 1 cut(s) 274
Kzo9I GATC 1 cut(s) 283
LpnPI CCDG 9 cut(s) 83, 132, 147, 203, 220, 264, 316, 323, 372
Lsp1109I GCAGC 3 cut(s) 43, 304, 381
LweI GCATC 1 cut(s) 48
MaeI CTAG 1 cut(s) 357
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MboII GAAGA 2 cut(s) 203, 278
MflI RGATCY 1 cut(s) 283
MhlI GDGCHC 2 cut(s) 265, 330
MluCI AATT 3 cut(s) 25, 49, 137
MnlI CCTC 3 cut(s) 82, 197, 344
MseI TTAA 2 cut(s) 140, 273
MslI CAYNNNNRTG 1 cut(s) 389
Mva1269I GAATGC 1 cut(s) 396
MwoI GCNNNNNNNGC 1 cut(s) 381
NdeII GATC 1 cut(s) 283
NlaIII CATG 1 cut(s) 164
NspI RCATGY 1 cut(s) 164
PaeI GCATGC 1 cut(s) 164
PctI GAATGC 1 cut(s) 396
PfeI GAWTC 1 cut(s) 312
PkrI GCNGC 3 cut(s) 33, 294, 396
PpuMI RGGWCCY 1 cut(s) 353
Psp5II RGGWCCY 1 cut(s) 353
PspPI GGNCC 1 cut(s) 353
PspPPI RGGWCCY 1 cut(s) 353
PstI CTGCAG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 283
RsaI GTAC 2 cut(s) 246, 336
RsaNI GTAC 2 cut(s) 245, 335
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 2 cut(s) 140, 273
SatI GCNGC 3 cut(s) 32, 293, 395
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 353
SduI GDGCHC 2 cut(s) 265, 330
SetI ASST 4 cut(s) 36, 355, 377, 411
SfaNI GCATC 1 cut(s) 48
SfcI CTRYAG 1 cut(s) 290
SinI GGWCC 1 cut(s) 353
SmiMI CAYNNNNRTG 1 cut(s) 389
SphI GCATGC 1 cut(s) 164
Sse9I AATT 3 cut(s) 25, 49, 137
SspI AATATT 1 cut(s) 202
SspMI CTAG 1 cut(s) 357
StyI CCWWGG 1 cut(s) 356
TaaI ACNGT 2 cut(s) 42, 74
TaqI TCGA 2 cut(s) 76, 401
TasI AATT 3 cut(s) 25, 49, 137
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 2 cut(s) 140, 273
Tru9I TTAA 2 cut(s) 140, 273
TscAI CASTG 2 cut(s) 77, 91
TseI GCWGC 3 cut(s) 31, 292, 394
TspDTI ATGAA 2 cut(s) 166, 212
TspRI CASTG 2 cut(s) 77, 91
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 164
XmaJI CCTAGG 1 cut(s) 356
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.