Rorug02G0128600

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000054
Physical Location & Seq
Reverse (-)
11084516 .. 11109775
25260 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0128600.1

Sequence Viewer

Length: 1575 bp
ATGGAGGGGCAATATTGTGATGACCACAGCAATTTCAATTTCAAAGGTATGATGCCCACAGCTATATCCTCCTTTTTCTCGGCCTATGCTCCCTTTGCTGGTTACATGTTTATGCTCAAATCCATGAACACCAATTTCCTCCCTTACGAGTTTAAATCATACATATACTCATACCTACAATCAAGCCTCAGCTACCTCCTGGACCCTCTAGCCAATCACATAACTCTCCTCATCGACAACCCTAGGGATCACTACTCGGACGAAATTTCGCAGCGCAACCTAGTCTATGATGCTGCTGAGGTCTATCTTGCCACCAAGATCAACCCGAAAACCCAAATCTTTCGAATCAGCAAAGCACCGAAACAAAAGGTCCCCATCATTGTTGTTACCACCACCCAAGAAATCGCCGACACTTTCGAAAACATTCAAGTAAAGTGGCGCATGATCTTCCCTGAAGAAAAAGACCGTCACAGTCACTACAGTAGGCTCAATAAGAGCCGCTTTGAGCTAACATTCCACAGGAAACACAAAGACAAAGTTATAAACTCGTACATCCCCTATGTATTGGCTCGGGCCGAGGCTATCAAAGATGCAGAAAAGACTCTAAAGCTTTATAGTTACAATAGTAAACGTTCCTCGGCCCATTACTTTAAACCTTCTGGTGGACGCTCTCAAGGTAGTGATGACGATGATGACTTTGCACCTTCTTCAGGCAATTGGAGTTGCGCGGATAATGAGCACCCAGCTACTTTCGAGACAATAGCAATGGAGCCGGAGCTGAAGAGAATTATCATAGATGATTTGGAAAAGTTCGTGAAGAGGAGGGAGTTCTACAAGAGAGTTGGCAAGGCTTGGAAGAGAGGCTACTTATTGTTTGGTCCACCCGGCACTGGAAAATCCAGCTTGGTAGCGGCCATGGCTAATCATCTCCGTTTTGATATTTATGATTTGGAACTCACTAGCATTTCCAGCAACGATCAATTGAGGAAGGCCTTGATGTCTACTACGAATCGTTCTATTGTGGTGTTTGAGGATATTGATTGCAGCAAGGAATCCGTAAACCGGGAATCAGCAGAGAGCAAGAACTTTATGGTTTCCAAAGCCGAATCCAAGTTGACACTATCAGGCCTACTGAACTTCATAGATGGTCTGTGGTCAAGCTGCGGGGACGAGAGAATTATAGTTTTCACTACCAACCACAAGGATCGGTTAGACCCTGCACTGCTGCGTCCGGGTCGCATGGATGTGCACATTCACATGTCTTATTGCACTGCAAAAGGATTCGACATCTTAGCCTCCAACTACCTAGGCATTCATGAAAGCAACCCTCATCACCTCTGCAAAGAAATTAAAGGGTTGATAGAGAGCACTGAAGTCACCCCTGCAGAGGTTGCTGAGGAGCTCATGAAAAGTGATGATGCTAATGGTACTCTCAAAGGGCTTGTCAATTTCCTCAAGAAAAAGAAGGTCGAGAATGATAAAGTGAAGGTAGAAGGGGCAGACAAAACTGAAGATCAAGGGCCATTTCCGGATGACTATTTACCACTCTATGATGGCTTTGACTTATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

524

Amino Acids

59.88

Weight (kDa)

6.27

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 48 - 148 1.3e-14 Domain associated at C-terminal with AAA
AAA PF00004 289 - 421 6e-19 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 423 - 493 4.1e-21 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 542
AccI GTMKAC 1 cut(s) 1001
AccII CGCG 1 cut(s) 728
AccIII TCCGGA 1 cut(s) 1528
AciI CCGC 4 cut(s) 499, 728, 911, 1164
AclI AACGTT 1 cut(s) 631
AclWI GGATC 2 cut(s) 255, 1212
AcoI YGGCCR 1 cut(s) 912
AcsI RAATTY 1 cut(s) 264
AcuI CTGAAG 5 cut(s) 474, 693, 800, 1392, 1530
AfaI GTAC 2 cut(s) 551, 1429
AfiI CCNNNNNNNGG 6 cut(s) 98, 662, 710, 890, 1062, 1387
AflIII ACRYGT 2 cut(s) 105, 1257
AgsI TTSAA 3 cut(s) 37, 43, 428
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 9 cut(s) 62, 192, 508, 610, 746, 778, 903, 1161, 1402
AluI AGCT 9 cut(s) 62, 192, 508, 610, 746, 778, 903, 1161, 1402
Alw21I GWGCWC 4 cut(s) 741, 1251, 1370, 1404
Alw26I GTCTC 1 cut(s) 749
Alw44I GTGCAC 1 cut(s) 1247
AlwI GGATC 2 cut(s) 255, 1212
Ama87I CYCGRG 1 cut(s) 570
Aor13HI TCCGGA 1 cut(s) 1528
AoxI GGCC 7 cut(s) 81, 573, 639, 912, 990, 1126, 1520
ApaLI GTGCAC 1 cut(s) 1247
ApeKI GCWGC 5 cut(s) 271, 293, 1044, 1161, 1225
ApoI RAATTY 1 cut(s) 264
ArsI GACNNNNNNTTYG 2 cut(s) 1428, 1460
Asp700I GAANNNNTTC 1 cut(s) 423
AspA2I CCTAGG 2 cut(s) 242, 1306
AspLEI GCGC 3 cut(s) 276, 441, 728
AspS9I GGNCC 6 cut(s) 202, 370, 573, 640, 878, 1520
AsuC2I CCSGG 3 cut(s) 885, 1064, 1233
AsuHPI GGTGA 2 cut(s) 1325, 1369
AsuII TTCGAA 2 cut(s) 343, 417
AvaI CYCGRG 1 cut(s) 570
AvaII GGWCC 3 cut(s) 202, 370, 878
AvrII CCTAGG 2 cut(s) 242, 1306
BaeGI GKGCMC 1 cut(s) 1251
BanII GRGCYC 1 cut(s) 1404
BarI GAAGNNNNNNTAC 2 cut(s) 848, 880
Bbv12I GWGCWC 4 cut(s) 741, 1251, 1370, 1404
BbvCI CCTCAGC 3 cut(s) 188, 297, 1395
BbvI GCAGC 5 cut(s) 280, 283, 1056, 1148, 1212
BccI CCATC 3 cut(s) 383, 1139, 1547
BciT130I CCWGG 1 cut(s) 200
BcnI CCSGG 3 cut(s) 885, 1064, 1233
BcoDI GTCTC 1 cut(s) 749
BfaI CTAG 5 cut(s) 209, 243, 281, 960, 1307
BfmI CTRYAG 2 cut(s) 478, 1383
BisI GCNGC 7 cut(s) 272, 294, 499, 912, 1045, 1162, 1226
BlnI CCTAGG 2 cut(s) 242, 1306
BlsI GCNGC 7 cut(s) 273, 295, 500, 913, 1046, 1163, 1227
Bme1390I CCNGG 4 cut(s) 200, 885, 1064, 1233
Bme18I GGWCC 3 cut(s) 202, 370, 878
BmeT110I CYCGRG 1 cut(s) 570
BmgT120I GGNCC 6 cut(s) 202, 370, 573, 640, 878, 1520
BmiI GGNNCC 3 cut(s) 204, 372, 771
BmrFI CCNGG 4 cut(s) 200, 885, 1064, 1233
BmsI GCATC 4 cut(s) 42, 280, 580, 1408
Bpu10I CCTNAGC 3 cut(s) 188, 297, 1395
Bpu14I TTCGAA 2 cut(s) 343, 417
BpuEI CTTGAG 2 cut(s) 657, 1439
BpuMI CCSGG 3 cut(s) 885, 1064, 1233
BsaJI CCNNGG 5 cut(s) 242, 576, 636, 915, 1306
BsaWI WCCGGW 1 cut(s) 1528
Bsc4I CCNNNNNNNGG 6 cut(s) 98, 662, 710, 890, 1062, 1387
Bse1I ACTGG 1 cut(s) 895
Bse3DI GCAATG 1 cut(s) 771
BseAI TCCGGA 1 cut(s) 1528
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 5 cut(s) 242, 576, 636, 915, 1306
BseGI GGATG 3 cut(s) 552, 1249, 1537
BseLI CCNNNNNNNGG 6 cut(s) 98, 662, 710, 890, 1062, 1387
BseMI GCAATG 1 cut(s) 771
BseMII CTCAG 3 cut(s) 202, 288, 1386
BseNI ACTGG 1 cut(s) 895
BseRI GAGGAG 3 cut(s) 218, 835, 1412
BseSI GKGCMC 1 cut(s) 1251
BseXI GCAGC 5 cut(s) 280, 283, 1056, 1148, 1212
BseYI CCCAGC 1 cut(s) 742
BsgI GTGCAG 1 cut(s) 1203
Bsh1236I CGCG 1 cut(s) 728
BshFI GGCC 7 cut(s) 83, 575, 641, 914, 992, 1128, 1522
BsiHKAI GWGCWC 4 cut(s) 741, 1251, 1370, 1404
BsiHKCI CYCGRG 1 cut(s) 570
BsiSI CCGG 5 cut(s) 773, 885, 1063, 1232, 1529
BslFI GGGAC 2 cut(s) 356, 1181
BslI CCNNNNNNNGG 6 cut(s) 98, 662, 710, 890, 1062, 1387
BsmAI GTCTC 1 cut(s) 749
BsmFI GGGAC 2 cut(s) 356, 1181
BsmI GAATGC 1 cut(s) 1311
BsnI GGCC 7 cut(s) 83, 575, 641, 914, 992, 1128, 1522
BsoBI CYCGRG 1 cut(s) 570
Bsp119I TTCGAA 2 cut(s) 343, 417
Bsp1286I GDGCHC 4 cut(s) 741, 1251, 1370, 1404
Bsp13I TCCGGA 1 cut(s) 1528
Bsp143I GATC 6 cut(s) 247, 318, 444, 976, 1204, 1513
Bsp19I CCATGG 1 cut(s) 915
BspACI CCGC 4 cut(s) 499, 728, 911, 1164
BspANI GGCC 7 cut(s) 83, 575, 641, 914, 992, 1128, 1522
BspCNI CTCAG 3 cut(s) 201, 289, 1387
BspEI TCCGGA 1 cut(s) 1528
BspFNI CGCG 1 cut(s) 728
BspHI TCATGA 2 cut(s) 1315, 1404
BspLI GGNNCC 3 cut(s) 204, 372, 771
BspMAI CTGCAG 1 cut(s) 1387
BspPI GGATC 2 cut(s) 255, 1212
BspT104I TTCGAA 2 cut(s) 343, 417
BsrDI GCAATG 1 cut(s) 771
BsrI ACTGG 1 cut(s) 895
BssECI CCNNGG 5 cut(s) 242, 576, 636, 915, 1306
BssMI GATC 6 cut(s) 247, 318, 444, 976, 1204, 1513
BssT1I CCWWGG 3 cut(s) 242, 915, 1306
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 3 cut(s) 467, 473, 482
Bst6I CTCTTC 3 cut(s) 776, 812, 851
BstAPI GCANNNNNTGC 1 cut(s) 1391
BstBI TTCGAA 2 cut(s) 343, 417
BstDEI CTNAG 4 cut(s) 188, 297, 1291, 1395
BstDSI CCRYGG 1 cut(s) 915
BstENI CCTNNNNNAGG 1 cut(s) 708
BstF5I GGATG 3 cut(s) 552, 1249, 1537
BstFNI CGCG 1 cut(s) 728
BstHHI GCGC 3 cut(s) 276, 441, 728
BstKTI GATC 6 cut(s) 250, 321, 447, 979, 1207, 1516
BstMAI GTCTC 1 cut(s) 749
BstMBI GATC 6 cut(s) 247, 318, 444, 976, 1204, 1513
BstMWI GCNNNNNNNGC 4 cut(s) 95, 917, 969, 1391
BstNI CCWGG 1 cut(s) 200
BstNSI RCATGY 2 cut(s) 109, 1261
BstSCI CCNGG 4 cut(s) 198, 883, 1062, 1231
BstSFI CTRYAG 2 cut(s) 478, 1383
BstSLI GKGCMC 1 cut(s) 1251
BstUI CGCG 1 cut(s) 728
BstV1I GCAGC 5 cut(s) 280, 283, 1056, 1148, 1212
BsuRI GGCC 7 cut(s) 83, 575, 641, 914, 992, 1128, 1522
BtgI CCRYGG 1 cut(s) 915
BtsCI GGATG 3 cut(s) 552, 1249, 1537
BtsI GCAGTG 2 cut(s) 1220, 1269
BtsIMutI CAGTG 4 cut(s) 888, 1220, 1269, 1368
CciI TCATGA 2 cut(s) 1315, 1404
CfoI GCGC 3 cut(s) 276, 441, 728
Cfr13I GGNCC 6 cut(s) 202, 370, 573, 640, 878, 1520
CseI GACGC 2 cut(s) 675, 1217
Csp6I GTAC 2 cut(s) 550, 1428
CspCI CAANNNNNGTGG 2 cut(s) 416, 451
CviAII CATG 8 cut(s) 106, 124, 442, 916, 1240, 1258, 1316, 1405
CviQI GTAC 2 cut(s) 550, 1428
DdeI CTNAG 4 cut(s) 188, 297, 1291, 1395
DpnI GATC 6 cut(s) 249, 320, 446, 978, 1206, 1515
DpnII GATC 6 cut(s) 247, 318, 444, 976, 1204, 1513
DraI TTTAAA 2 cut(s) 154, 652
EaeI YGGCCR 1 cut(s) 912
Eam1104I CTCTTC 3 cut(s) 776, 812, 851
EarI CTCTTC 3 cut(s) 776, 812, 851
Ecl136II GAGCTC 1 cut(s) 1402
Eco130I CCWWGG 3 cut(s) 242, 915, 1306
Eco147I AGGCCT 2 cut(s) 992, 1128
Eco24I GRGCYC 1 cut(s) 1404
Eco47I GGWCC 3 cut(s) 202, 370, 878
Eco53kI GAGCTC 1 cut(s) 1402
Eco57I CTGAAG 5 cut(s) 474, 693, 800, 1392, 1530
Eco88I CYCGRG 1 cut(s) 570
EcoICRI GAGCTC 1 cut(s) 1402
EcoNI CCTNNNNNAGG 1 cut(s) 708
EcoO109I RGGNCCY 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 3 cut(s) 242, 915, 1306
EcoT38I GRGCYC 1 cut(s) 1404
ErhI CCWWGG 3 cut(s) 242, 915, 1306
FaeI CATG 8 cut(s) 109, 127, 445, 919, 1243, 1261, 1319, 1408
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FaqI GGGAC 2 cut(s) 356, 1181
FatI CATG 8 cut(s) 105, 123, 441, 915, 1239, 1257, 1315, 1404
FauI CCCGC 1 cut(s) 1157
FblI GTMKAC 1 cut(s) 1001
Fnu4HI GCNGC 7 cut(s) 272, 294, 499, 912, 1045, 1162, 1226
FokI GGATG 3 cut(s) 539, 1256, 1544
FriOI GRGCYC 1 cut(s) 1404
Fsp4HI GCNGC 7 cut(s) 272, 294, 499, 912, 1045, 1162, 1226
FspBI CTAG 5 cut(s) 209, 243, 281, 960, 1307
GlaI GCGC 3 cut(s) 275, 440, 727
GluI GCNGC 7 cut(s) 272, 294, 499, 912, 1045, 1162, 1226
GsaI CCCAGC 1 cut(s) 746
HaeIII GGCC 7 cut(s) 83, 575, 641, 914, 992, 1128, 1522
HapII CCGG 5 cut(s) 773, 885, 1063, 1232, 1529
HgaI GACGC 2 cut(s) 675, 1217
HhaI GCGC 3 cut(s) 276, 441, 728
Hin1II CATG 8 cut(s) 109, 127, 445, 919, 1243, 1261, 1319, 1408
Hin6I GCGC 3 cut(s) 274, 439, 726
HinP1I GCGC 3 cut(s) 274, 439, 726
HincII GTYRAC 1 cut(s) 1116
HindII GTYRAC 1 cut(s) 1116
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 7 cut(s) 345, 601, 1009, 1052, 1067, 1106, 1281
HpaII CCGG 5 cut(s) 773, 885, 1063, 1232, 1529
HphI GGTGA 2 cut(s) 1325, 1369
Hpy166II GTNNAC 7 cut(s) 629, 665, 881, 1002, 1060, 1116, 1249
Hpy188I TCNGA 1 cut(s) 259
Hpy188III TCNNGA 7 cut(s) 754, 814, 1316, 1405, 1456, 1471, 1529
Hpy8I GTNNAC 7 cut(s) 629, 665, 881, 1002, 1060, 1116, 1249
HpyAV CCTTC 6 cut(s) 666, 714, 982, 1459, 1480, 1487
HpyCH4III ACNGT 3 cut(s) 467, 473, 482
HpyCH4IV ACGT 1 cut(s) 631
HpyCH4V TGCA 9 cut(s) 593, 701, 1044, 1220, 1249, 1269, 1274, 1341, 1385
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 917, 969, 1391
HpyF3I CTNAG 4 cut(s) 188, 297, 1291, 1395
HpySE526I ACGT 1 cut(s) 631
Hsp92II CATG 8 cut(s) 109, 127, 445, 919, 1243, 1261, 1319, 1408
HspAI GCGC 3 cut(s) 274, 439, 726
Kpn2I TCCGGA 1 cut(s) 1528
Kzo9I GATC 6 cut(s) 247, 318, 444, 976, 1204, 1513
LmnI GCTCC 4 cut(s) 94, 769, 775, 1399
Lsp1109I GCAGC 5 cut(s) 280, 283, 1056, 1148, 1212
LweI GCATC 4 cut(s) 42, 280, 580, 1408
MaeI CTAG 5 cut(s) 209, 243, 281, 960, 1307
MaeII ACGT 1 cut(s) 631
MaeIII GTNAC 6 cut(s) 101, 385, 467, 473, 617, 1375
MalI GATC 6 cut(s) 249, 320, 446, 978, 1206, 1515
MboI GATC 6 cut(s) 247, 318, 444, 976, 1204, 1513
MboII GAAGA 7 cut(s) 439, 467, 699, 793, 829, 868, 1523
MfeI CAATTG 2 cut(s) 715, 980
MhlI GDGCHC 4 cut(s) 741, 1251, 1370, 1404
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 1 cut(s) 1323
MroI TCCGGA 1 cut(s) 1528
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 3 cut(s) 153, 651, 1350
MslI CAYNNNNRTG 3 cut(s) 110, 1244, 1256
MspI CCGG 5 cut(s) 773, 885, 1063, 1232, 1529
MspR9I CCNGG 4 cut(s) 200, 885, 1064, 1233
MunI CAATTG 2 cut(s) 715, 980
Mva1269I GAATGC 1 cut(s) 1311
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 728
MwoI GCNNNNNNNGC 4 cut(s) 95, 917, 969, 1391
NciI CCSGG 3 cut(s) 885, 1064, 1233
NcoI CCATGG 1 cut(s) 915
NdeII GATC 6 cut(s) 247, 318, 444, 976, 1204, 1513
NlaIII CATG 8 cut(s) 109, 127, 445, 919, 1243, 1261, 1319, 1408
NlaIV GGNNCC 3 cut(s) 204, 372, 771
NmeAIII GCCGAG 3 cut(s) 59, 601, 617
NmuCI GTSAC 3 cut(s) 467, 473, 1375
NspI RCATGY 2 cut(s) 109, 1261
NspV TTCGAA 2 cut(s) 343, 417
PagI TCATGA 2 cut(s) 1315, 1404
PceI AGGCCT 2 cut(s) 992, 1128
PciI ACATGT 2 cut(s) 105, 1257
PctI GAATGC 1 cut(s) 1311
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 6 cut(s) 345, 1009, 1052, 1067, 1106, 1281
PfoI TCCNGGA 1 cut(s) 198
PkrI GCNGC 7 cut(s) 273, 295, 500, 913, 1046, 1163, 1227
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PpuMI RGGWCCY 1 cut(s) 370
PscI ACATGT 2 cut(s) 105, 1257
PsiI TTATAA 1 cut(s) 542
Psp124BI GAGCTC 1 cut(s) 1404
Psp1406I AACGTT 1 cut(s) 631
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 742
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 3 cut(s) 204, 372, 771
PspPI GGNCC 6 cut(s) 202, 370, 573, 640, 878, 1520
PspPPI RGGWCCY 1 cut(s) 370
PstI CTGCAG 1 cut(s) 1387
RsaI GTAC 2 cut(s) 551, 1429
RsaNI GTAC 2 cut(s) 550, 1428
RseI CAYNNNNRTG 3 cut(s) 110, 1244, 1256
SacI GAGCTC 1 cut(s) 1404
SaqAI TTAA 3 cut(s) 153, 651, 1350
SatI GCNGC 7 cut(s) 272, 294, 499, 912, 1045, 1162, 1226
Sau3AI GATC 6 cut(s) 247, 318, 444, 976, 1204, 1513
Sau96I GGNCC 6 cut(s) 202, 370, 573, 640, 878, 1520
SchI GAGTC 1 cut(s) 595
ScrFI CCNGG 4 cut(s) 200, 885, 1064, 1233
SduI GDGCHC 4 cut(s) 741, 1251, 1370, 1404
SfaNI GCATC 4 cut(s) 42, 280, 580, 1408
SfcI CTRYAG 2 cut(s) 478, 1383
SfuI TTCGAA 2 cut(s) 343, 417
SinI GGWCC 3 cut(s) 202, 370, 878
SmiMI CAYNNNNRTG 3 cut(s) 110, 1244, 1256
SmlI CTYRAG 2 cut(s) 672, 1454
SmoI CTYRAG 2 cut(s) 672, 1454
SseBI AGGCCT 2 cut(s) 992, 1128
SsiI CCGC 4 cut(s) 499, 728, 911, 1164
SspI AATATT 1 cut(s) 14
SspMI CTAG 5 cut(s) 209, 243, 281, 960, 1307
SstI GAGCTC 1 cut(s) 1404
StuI AGGCCT 2 cut(s) 992, 1128
StyD4I CCNGG 4 cut(s) 198, 883, 1062, 1231
StyI CCWWGG 3 cut(s) 242, 915, 1306
TaaI ACNGT 3 cut(s) 467, 473, 482
TaiI ACGT 1 cut(s) 634
TaqI TCGA 6 cut(s) 234, 343, 417, 753, 1284, 1470
TauI GCSGC 2 cut(s) 501, 914
TfiI GAWTC 6 cut(s) 345, 1009, 1052, 1067, 1106, 1281
Tru1I TTAA 3 cut(s) 153, 651, 1350
Tru9I TTAA 3 cut(s) 153, 651, 1350
TscAI CASTG 4 cut(s) 895, 1227, 1276, 1375
TseFI GTSAC 3 cut(s) 467, 473, 1375
TseI GCWGC 5 cut(s) 271, 293, 1044, 1161, 1225
Tsp45I GTSAC 3 cut(s) 467, 473, 1375
TspDTI ATGAA 5 cut(s) 140, 1129, 1304, 1332, 1421
TspGWI ACGGA 2 cut(s) 920, 1045
TspRI CASTG 4 cut(s) 895, 1227, 1276, 1375
VneI GTGCAC 1 cut(s) 1247
VpaK11BI GGWCC 3 cut(s) 202, 370, 878
XagI CCTNNNNNAGG 1 cut(s) 708
XapI RAATTY 1 cut(s) 264
XceI RCATGY 2 cut(s) 109, 1261
XmaJI CCTAGG 2 cut(s) 242, 1306
XmiI GTMKAC 1 cut(s) 1001
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 5 cut(s) 209, 243, 281, 960, 1307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.