RchiOBHm_Chr4g0392071

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000054
Physical Location & Seq
Forward (+)
7482059 .. 7484495
2437 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36485

Sequence Viewer

Length: 1329 bp
ATGCTGCCATCTACAAAGCTTTACGGATTGATCAAGCAATTATTGTCAGTAGACAATGCTCCAAGGTACAAGGAGACTACTGTGAGGGACTACTTTGTGTACAGCAGCCAGAAAGGCCTCGATGTCAATGGTCTTCCTCAAACACTTTTGGTATTAATCTTATTTGTCAAGCCTAAGATGCATGCATTAAGCTTTACCATAGCACAGACCAAGATGGTAGCTACCAACAGAACCGAGGTTCCAACCAACTATGACAGAAAAAGTGAACTGAAAGCTTTTGATGACACAAAGGAAGGTGTTAAAGGCCTTGTTGATGCTGGAGTAACTGAGATTCCTCGAATTTTTCATCATCCACCAGATGAGTACTCCATCCATGATTTCAGTGATCCAGAAGAAACCCAATATAGCATTCCAGTCATTGATATTGAAGGCCTTTCCGATTCAACTAAACAAAAGGAGATTGTTGCAAAAGTTGGAGAGGCATCAGAGACCTGGGGCTTCTTTCAGATAGTCAACCATGGAATACCTGTTGATGTTCTTGAAGAGATAAAAAATGGGGTCCGTCGGTTTTTTGAGCAGGACTCTGAGGTGAAGAAACAGCTTTATGGTCGCGATCACTTCAGGAATCCTGTGCTCTATAATAGCAACTTTGATCTGTATAGTGCACCGGCGACTAATTGGAGAGATACTTTTTCATGTTACATGGATCCAACTCCTACTAAGCGAGAAGACTTGCCAGACGTATGCAGAGACGTACTTGTTGAGTACTCGAACCAAGTAATGAAGTTGGGGAAGCTATTGTTCGACTTGTTGTCTGAAGCTCTTGGATTGAAGCCGAGTCACTTGAATGACATAGATTGTACTGAGGGGCATCTGTTAGCAGGCCATTACTATCCCCCTTGTCCACAGCCAGAACTAACTCTAGGCGCAACCAAACATGCTGATAATGCCTTTCTTACTGTTCTTCTGCAAGACCATATTGGTGGTCTTCAAGTCCTTCACCAGAACAAGTGGTTTGATGTACCGCCCGTGCACGGTGCTCTTGTGGTTAATATTGGAGATCTTCTGCAGGCAAGACTTATATCTAATGACAGATTCAAGAGTGTAGAACACAGGGTGCTGGCAAACCTTAGAGGTCCACGAGTATCGGTTGCAAGCTTTTTTTGCACAGGATTGCTGCCATTAACAAAACTCTATGGACCCATCAAGGAGTTGCTATCAGCAGACAATCCTCCGAAGTACAGGGAGACTACTGTTAGGGACTATTTTGCCTACTTCAATCAAAAAGGCCTCGATGGTACCTCTGCCTTGTCTCATTTTGAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

442

Amino Acids

49.93

Weight (kDa)

5.85

Isoelectric Point (pI)

34.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 137 - 241 1.4e-21 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 291 - 389 1.9e-30 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1298
AccB1I GGYRCC 1 cut(s) 1298
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 612
AciI CCGC 1 cut(s) 1025
AclWI GGATC 3 cut(s) 380, 701, 714
AcsI RAATTY 1 cut(s) 339
AcuI CTGAAG 2 cut(s) 604, 837
AdeI CACNNNGTG 1 cut(s) 1117
AfaI GTAC 9 cut(s) 68, 101, 365, 756, 767, 862, 1023, 1241, 1300
AfiI CCNNNNNNNGG 1 cut(s) 1034
AgsI TTSAA 8 cut(s) 428, 444, 542, 832, 847, 992, 1099, 1279
AhdI GACNNNNNGTC 1 cut(s) 811
AjnI CCWGG 1 cut(s) 491
AjuI GAANNNNNNNTTGG 2 cut(s) 393, 425
AloI GAACNNNNNNTCC 2 cut(s) 223, 255
AluBI AGCT 9 cut(s) 19, 192, 221, 275, 601, 796, 821, 1158, 1324
AluI AGCT 9 cut(s) 19, 192, 221, 275, 601, 796, 821, 1158, 1324
Alw21I GWGCWC 4 cut(s) 636, 667, 1035, 1042
Alw26I GTCTC 5 cut(s) 68, 482, 744, 1241, 1317
Alw44I GTGCAC 2 cut(s) 663, 1031
AlwI GGATC 3 cut(s) 380, 701, 714
AoxI GGCC 5 cut(s) 115, 304, 430, 883, 1288
ApaLI GTGCAC 2 cut(s) 663, 1031
ApeKI GCWGC 3 cut(s) 4, 105, 1177
ApoI RAATTY 1 cut(s) 339
AseI ATTAAT 1 cut(s) 155
Asp718I GGTACC 1 cut(s) 1298
AspLEI GCGC 1 cut(s) 929
AspS9I GGNCC 3 cut(s) 559, 1136, 1199
AsuHPI GGTGA 2 cut(s) 601, 992
AvaII GGWCC 3 cut(s) 559, 1136, 1199
BaeGI GKGCMC 2 cut(s) 667, 1035
BamHI GGATCC 1 cut(s) 706
BanI GGYRCC 1 cut(s) 1298
BauI CACGAG 1 cut(s) 1140
BbsI GAAGAC 3 cut(s) 125, 735, 980
Bbv12I GWGCWC 4 cut(s) 636, 667, 1035, 1042
BbvI GCAGC 2 cut(s) 117, 1164
BccI CCATC 5 cut(s) 16, 208, 377, 1211, 1289
BciT130I CCWGG 1 cut(s) 493
BclI TGATCA 1 cut(s) 30
BcoDI GTCTC 5 cut(s) 68, 482, 744, 1241, 1317
BfaI CTAG 1 cut(s) 923
BfmI CTRYAG 1 cut(s) 1067
BglI GCCNNNNNGGC 1 cut(s) 114
BglII AGATCT 1 cut(s) 1060
BisI GCNGC 3 cut(s) 5, 106, 1178
BlsI GCNGC 3 cut(s) 6, 107, 1179
BmcAI AGTACT 2 cut(s) 365, 767
Bme1390I CCNGG 1 cut(s) 493
Bme18I GGWCC 3 cut(s) 559, 1136, 1199
BmeRI GACNNNNNGTC 1 cut(s) 811
BmgT120I GGNCC 3 cut(s) 559, 1136, 1199
BmiI GGNNCC 5 cut(s) 240, 560, 708, 1201, 1300
BmrFI CCNGG 1 cut(s) 493
BmsI GCATC 4 cut(s) 168, 304, 491, 880
BpiI GAAGAC 3 cut(s) 125, 735, 980
BplI GAGNNNNNCTC 2 cut(s) 566, 598
BpmI CTGGAG 1 cut(s) 339
BsaI GGTCTC 1 cut(s) 482
BsaJI CCNNGG 4 cut(s) 62, 234, 492, 517
Bsc4I CCNNNNNNNGG 1 cut(s) 1034
Bse118I RCCGGY 1 cut(s) 667
Bse1I ACTGG 1 cut(s) 413
BseBI CCWGG 1 cut(s) 493
BseDI CCNNGG 4 cut(s) 62, 234, 492, 517
BseGI GGATG 2 cut(s) 349, 369
BseLI CCNNNNNNNGG 1 cut(s) 1034
BseMII CTCAG 3 cut(s) 318, 576, 855
BseNI ACTGG 1 cut(s) 413
BseSI GKGCMC 2 cut(s) 667, 1035
BseXI GCAGC 2 cut(s) 117, 1164
Bsh1236I CGCG 1 cut(s) 612
BshFI GGCC 5 cut(s) 117, 306, 432, 885, 1290
BshNI GGYRCC 1 cut(s) 1298
BsiHKAI GWGCWC 4 cut(s) 636, 667, 1035, 1042
BsiSI CCGG 1 cut(s) 668
BslFI GGGAC 2 cut(s) 101, 1274
BslI CCNNNNNNNGG 1 cut(s) 1034
BsmAI GTCTC 5 cut(s) 68, 482, 744, 1241, 1317
BsmBI CGTCTC 1 cut(s) 744
BsmFI GGGAC 2 cut(s) 101, 1274
BsmI GAATGC 1 cut(s) 408
BsnI GGCC 5 cut(s) 117, 306, 432, 885, 1290
Bso31I GGTCTC 1 cut(s) 482
Bsp1286I GDGCHC 4 cut(s) 636, 667, 1035, 1042
Bsp1407I TGTACA 1 cut(s) 99
Bsp143I GATC 6 cut(s) 30, 385, 613, 652, 706, 1060
Bsp19I CCATGG 1 cut(s) 517
Bsp68I TCGCGA 1 cut(s) 612
BspACI CCGC 1 cut(s) 1025
BspANI GGCC 5 cut(s) 117, 306, 432, 885, 1290
BspCNI CTCAG 3 cut(s) 319, 577, 856
BspFNI CGCG 1 cut(s) 612
BspLI GGNNCC 5 cut(s) 240, 560, 708, 1201, 1300
BspMAI CTGCAG 1 cut(s) 1071
BspPI GGATC 3 cut(s) 380, 701, 714
BspT107I GGYRCC 1 cut(s) 1298
BspTNI GGTCTC 1 cut(s) 482
BsrFI RCCGGY 1 cut(s) 667
BsrGI TGTACA 1 cut(s) 99
BsrI ACTGG 1 cut(s) 413
BssAI RCCGGY 1 cut(s) 667
BssECI CCNNGG 4 cut(s) 62, 234, 492, 517
BssMI GATC 6 cut(s) 30, 385, 613, 652, 706, 1060
BssSI CACGAG 1 cut(s) 1140
BssT1I CCWWGG 2 cut(s) 62, 517
Bst2BI CACGAG 1 cut(s) 1140
Bst2UI CCWGG 1 cut(s) 493
Bst4CI ACNGT 4 cut(s) 82, 961, 1037, 1255
Bst6I CTCTTC 1 cut(s) 537
BstAUI TGTACA 1 cut(s) 99
BstC8I GCNNGC 5 cut(s) 183, 883, 1071, 1122, 1156
BstDEI CTNAG 6 cut(s) 174, 327, 585, 720, 864, 1130
BstDSI CCRYGG 1 cut(s) 517
BstF5I GGATG 2 cut(s) 349, 369
BstFNI CGCG 1 cut(s) 612
BstHHI GCGC 1 cut(s) 929
BstKTI GATC 6 cut(s) 33, 388, 616, 655, 709, 1063
BstMAI GTCTC 5 cut(s) 68, 482, 744, 1241, 1317
BstMBI GATC 6 cut(s) 30, 385, 613, 652, 706, 1060
BstMWI GCNNNNNNNGC 4 cut(s) 114, 178, 947, 1164
BstNI CCWGG 1 cut(s) 493
BstNSI RCATGY 2 cut(s) 185, 941
BstSCI CCNGG 1 cut(s) 491
BstSFI CTRYAG 1 cut(s) 1067
BstSLI GKGCMC 2 cut(s) 667, 1035
BstUI CGCG 1 cut(s) 612
BstV1I GCAGC 2 cut(s) 117, 1164
BstV2I GAAGAC 3 cut(s) 125, 735, 980
BstX2I RGATCY 2 cut(s) 706, 1060
BstXI CCANNNNNNTGG 1 cut(s) 983
BstYI RGATCY 2 cut(s) 706, 1060
BsuRI GGCC 5 cut(s) 117, 306, 432, 885, 1290
BtgI CCRYGG 1 cut(s) 517
BtsCI GGATG 2 cut(s) 349, 369
BtsIMutI CAGTG 1 cut(s) 388
BtuMI TCGCGA 1 cut(s) 612
Cac8I GCNNGC 5 cut(s) 183, 883, 1071, 1122, 1156
CfoI GCGC 1 cut(s) 929
Cfr10I RCCGGY 1 cut(s) 667
Cfr13I GGNCC 3 cut(s) 559, 1136, 1199
Csp6I GTAC 9 cut(s) 67, 100, 364, 755, 766, 861, 1022, 1240, 1299
CviAII CATG 6 cut(s) 182, 374, 518, 696, 703, 938
CviQI GTAC 9 cut(s) 67, 100, 364, 755, 766, 861, 1022, 1240, 1299
DdeI CTNAG 6 cut(s) 174, 327, 585, 720, 864, 1130
DpnI GATC 6 cut(s) 32, 387, 615, 654, 708, 1062
DpnII GATC 6 cut(s) 30, 385, 613, 652, 706, 1060
DraIII CACNNNGTG 1 cut(s) 1117
DriI GACNNNNNGTC 1 cut(s) 811
Eam1104I CTCTTC 1 cut(s) 537
Eam1105I GACNNNNNGTC 1 cut(s) 811
EarI CTCTTC 1 cut(s) 537
Eco130I CCWWGG 2 cut(s) 62, 517
Eco147I AGGCCT 4 cut(s) 117, 306, 432, 1290
Eco31I GGTCTC 1 cut(s) 482
Eco47I GGWCC 3 cut(s) 559, 1136, 1199
Eco57I CTGAAG 2 cut(s) 604, 837
EcoRII CCWGG 1 cut(s) 491
EcoT14I CCWWGG 2 cut(s) 62, 517
EcoT22I ATGCAT 2 cut(s) 183, 187
ErhI CCWWGG 2 cut(s) 62, 517
Esp3I CGTCTC 1 cut(s) 744
FaeI CATG 6 cut(s) 185, 377, 521, 699, 706, 941
FaqI GGGAC 2 cut(s) 101, 1274
FatI CATG 6 cut(s) 181, 373, 517, 695, 702, 937
FbaI TGATCA 1 cut(s) 30
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 3 cut(s) 5, 106, 1178
FokI GGATG 2 cut(s) 336, 356
Fsp4HI GCNGC 3 cut(s) 5, 106, 1178
FspBI CTAG 1 cut(s) 923
GlaI GCGC 1 cut(s) 928
GluI GCNGC 3 cut(s) 5, 106, 1178
GsuI CTGGAG 1 cut(s) 339
HaeIII GGCC 5 cut(s) 117, 306, 432, 885, 1290
HapII CCGG 1 cut(s) 668
HhaI GCGC 1 cut(s) 929
Hin1II CATG 6 cut(s) 185, 377, 521, 699, 706, 941
Hin6I GCGC 1 cut(s) 927
HinP1I GCGC 1 cut(s) 927
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 4 cut(s) 17, 190, 273, 1156
HinfI GANTC 6 cut(s) 331, 440, 581, 625, 838, 1095
HpaII CCGG 1 cut(s) 668
HphI GGTGA 2 cut(s) 601, 992
Hpy166II GTNNAC 8 cut(s) 52, 100, 266, 514, 665, 905, 1033, 1139
Hpy188I TCNGA 6 cut(s) 439, 487, 507, 586, 817, 1236
Hpy188III TCNNGA 5 cut(s) 389, 539, 611, 622, 1099
Hpy8I GTNNAC 8 cut(s) 52, 100, 266, 514, 665, 905, 1033, 1139
Hpy99I CGWCG 1 cut(s) 567
HpyAV CCTTC 3 cut(s) 287, 422, 1007
HpyCH4III ACNGT 4 cut(s) 82, 961, 1037, 1255
HpyCH4IV ACGT 2 cut(s) 741, 753
HpyF10VI GCNNNNNNNGC 4 cut(s) 114, 178, 947, 1164
HpyF3I CTNAG 6 cut(s) 174, 327, 585, 720, 864, 1130
HpySE526I ACGT 2 cut(s) 741, 753
Hsp92II CATG 6 cut(s) 185, 377, 521, 699, 706, 941
HspAI GCGC 1 cut(s) 927
KpnI GGTACC 1 cut(s) 1302
Ksp22I TGATCA 1 cut(s) 30
Kzo9I GATC 6 cut(s) 30, 385, 613, 652, 706, 1060
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 2 cut(s) 117, 1164
LweI GCATC 4 cut(s) 168, 304, 491, 880
MaeI CTAG 1 cut(s) 923
MaeII ACGT 2 cut(s) 741, 753
MaeIII GTNAC 3 cut(s) 322, 698, 839
MalI GATC 6 cut(s) 32, 387, 615, 654, 708, 1062
MboI GATC 6 cut(s) 30, 385, 613, 652, 706, 1060
MboII GAAGA 8 cut(s) 125, 404, 554, 604, 740, 956, 980, 1055
MflI RGATCY 2 cut(s) 706, 1060
MhlI GDGCHC 4 cut(s) 636, 667, 1035, 1042
MluCI AATT 3 cut(s) 38, 339, 676
MlyI GAGTC 2 cut(s) 575, 847
MmeI TCCRAC 3 cut(s) 266, 454, 734
Mph1103I ATGCAT 2 cut(s) 183, 187
MseI TTAA 5 cut(s) 155, 188, 300, 1050, 1184
MslI CAYNNNNRTG 2 cut(s) 846, 981
MspI CCGG 1 cut(s) 668
MspR9I CCNGG 1 cut(s) 493
Mva1269I GAATGC 1 cut(s) 408
MvaI CCWGG 1 cut(s) 493
MvnI CGCG 1 cut(s) 612
MwoI GCNNNNNNNGC 4 cut(s) 114, 178, 947, 1164
NcoI CCATGG 1 cut(s) 517
NdeII GATC 6 cut(s) 30, 385, 613, 652, 706, 1060
NlaIII CATG 6 cut(s) 185, 377, 521, 699, 706, 941
NlaIV GGNNCC 5 cut(s) 240, 560, 708, 1201, 1300
NmeAIII GCCGAG 1 cut(s) 861
NmuCI GTSAC 1 cut(s) 839
NruI TCGCGA 1 cut(s) 612
NsiI ATGCAT 2 cut(s) 183, 187
NspI RCATGY 2 cut(s) 185, 941
PaeI GCATGC 1 cut(s) 185
PceI AGGCCT 4 cut(s) 117, 306, 432, 1290
PctI GAATGC 1 cut(s) 408
PfeI GAWTC 4 cut(s) 331, 440, 625, 1095
PkrI GCNGC 3 cut(s) 6, 107, 1179
PleI GAGTC 2 cut(s) 575, 846
PpsI GAGTC 2 cut(s) 575, 846
PshBI ATTAAT 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 491
PspGI CCWGG 1 cut(s) 491
PspN4I GGNNCC 5 cut(s) 240, 560, 708, 1201, 1300
PspPI GGNCC 3 cut(s) 559, 1136, 1199
PstI CTGCAG 1 cut(s) 1071
PsuI RGATCY 2 cut(s) 706, 1060
RruI TCGCGA 1 cut(s) 612
RsaI GTAC 9 cut(s) 68, 101, 365, 756, 767, 862, 1023, 1241, 1300
RsaNI GTAC 9 cut(s) 67, 100, 364, 755, 766, 861, 1022, 1240, 1299
RseI CAYNNNNRTG 2 cut(s) 846, 981
SaqAI TTAA 5 cut(s) 155, 188, 300, 1050, 1184
SatI GCNGC 3 cut(s) 5, 106, 1178
Sau3AI GATC 6 cut(s) 30, 385, 613, 652, 706, 1060
Sau96I GGNCC 3 cut(s) 559, 1136, 1199
ScaI AGTACT 2 cut(s) 365, 767
SchI GAGTC 2 cut(s) 575, 847
ScrFI CCNGG 1 cut(s) 493
SduI GDGCHC 4 cut(s) 636, 667, 1035, 1042
SfaNI GCATC 4 cut(s) 168, 304, 491, 880
SfcI CTRYAG 1 cut(s) 1067
SgrAI CRCCGGYG 1 cut(s) 667
SinI GGWCC 3 cut(s) 559, 1136, 1199
SmiMI CAYNNNNRTG 2 cut(s) 846, 981
SphI GCATGC 1 cut(s) 185
Sse9I AATT 3 cut(s) 38, 339, 676
SseBI AGGCCT 4 cut(s) 117, 306, 432, 1290
SsiI CCGC 1 cut(s) 1025
SspI AATATT 1 cut(s) 1054
SspMI CTAG 1 cut(s) 923
StuI AGGCCT 4 cut(s) 117, 306, 432, 1290
StyD4I CCNGG 1 cut(s) 491
StyI CCWWGG 2 cut(s) 62, 517
TaaI ACNGT 4 cut(s) 82, 961, 1037, 1255
TaiI ACGT 2 cut(s) 744, 756
TaqI TCGA 5 cut(s) 120, 337, 770, 804, 1293
TasI AATT 3 cut(s) 38, 339, 676
TatI WGTACW 5 cut(s) 99, 363, 765, 860, 1239
TfiI GAWTC 4 cut(s) 331, 440, 625, 1095
Tru1I TTAA 5 cut(s) 155, 188, 300, 1050, 1184
Tru9I TTAA 5 cut(s) 155, 188, 300, 1050, 1184
TscAI CASTG 1 cut(s) 388
TseFI GTSAC 1 cut(s) 839
TseI GCWGC 3 cut(s) 4, 105, 1177
Tsp45I GTSAC 1 cut(s) 839
TspDTI ATGAA 3 cut(s) 335, 684, 797
TspGWI ACGGA 2 cut(s) 39, 551
TspRI CASTG 1 cut(s) 388
VneI GTGCAC 2 cut(s) 663, 1031
VpaK11BI GGWCC 3 cut(s) 559, 1136, 1199
VspI ATTAAT 1 cut(s) 155
XapI RAATTY 1 cut(s) 339
XceI RCATGY 2 cut(s) 185, 941
XmiI GTMKAC 1 cut(s) 51
XspI CTAG 1 cut(s) 923
ZrmI AGTACT 2 cut(s) 365, 767
Zsp2I ATGCAT 2 cut(s) 183, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.