Rh6DG035900

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000054
Physical Location & Seq
Reverse (-)
3675874 .. 3677426
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG035900.1

Sequence Viewer

Length: 1095 bp
ATGGCCAATACTGAAGAGCGTCTGCGACAGCTAAAGGCCTTTGACGAATCCAAAGCTGGTGTCAAAGGTCTTGTCGATGATGGAATCACCAAAGTCCCATCCATTTTCATTTGCAAGCCAGAAGATCCCTCAGCCGAGGACGTCCCAAGTTTCGGCAATCCAACTGGCCAACACCAATTCAGTATTCCAGTTGTGGACCTTGGTGATGTTGTCGCTGGAAGGCCTGCTAAGGTGATCCAAGATATCAGGCGGGCTGCAGAGAGTGTGGGGTTCTTTTATGTGGTTAACCATGGGATACCCAAGACAGTGTTGGAGGAGATGCTCGAGGCGACGCGTAGGTTTCATGAGCTGCCAAGGGAGGTGAAGGCTGAGTACTATACTAGGGATCCCATGAGGAAGGTCAAATACTTCAGTAGCTATAATTTGTACCAGTCAAGGTTTGCTACCTGGAGGGACAGCATGTTTTGTGACATGGCTCCCGAGCCTCTTGATCCCCAAGAATTGCCTCTGGTTTGCCGGGATATAACAATGGAGTATTCTAATCAAGTACACAAATTAGGTGTCACTTTGTTTGAATTGCTATCTCAGGCACTTGGACTCAAACCTGACCATCTTATCAGTTTGGATTGCGAAAAAGAGCATCTTATTGCTAGTCACTACTATCCTCCATGTCCTGAGCCTGAGCTCACAATTGGCACAGCCAACCACTCAGATGGCACTTTCATAACAATTCTACTTCAAGATCATATTGGTGGACTTCAGGTTTTGCACGAAAACCAGTGGATTGATGTTCTTCCTGTGCCTGGAGCTCTAATAGTCAACATTGGAAATTTTATGCAGATAATCTCAAATGATAAGTTCGTAAGCGTTGATCATAGAGTGTTGGCAAAGAAAGAAGGTCCAAGAGTATCTGTGGGATGTTTTTTCCGACCTGCTACGTCGGATAATTCGTCGAGGCTGTACGAACCAATTAAAGAGTTGACATGCAAAGAAAATCCACCCATTTATCGAACAATTACCACGAAAGAATATTATACGGAGTATTACAAAAACTCTATAAATGAGGTCCCTGTTCTAAAATCTTTGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

364

Amino Acids

41.26

Weight (kDa)

5.71

Isoelectric Point (pI)

38.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 62 - 165 7.9e-21 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 213 - 311 2.3e-31 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 940
AccII CGCG 1 cut(s) 334
AciI CCGC 1 cut(s) 250
AclWI GGATC 5 cut(s) 119, 229, 380, 393, 485
AcoI YGGCCR 2 cut(s) 3, 166
AcsI RAATTY 1 cut(s) 829
AcuI CTGAAG 3 cut(s) 33, 394, 743
AcyI GRCGYC 1 cut(s) 141
AfaI GTAC 4 cut(s) 374, 428, 549, 962
AfiI CCNNNNNNNGG 2 cut(s) 152, 803
AflIII ACRYGT 1 cut(s) 332
AgsI TTSAA 3 cut(s) 575, 740, 1087
AjnI CCWGG 2 cut(s) 446, 802
AjuI GAANNNNNNNTTGG 2 cut(s) 168, 200
AluBI AGCT 6 cut(s) 31, 56, 349, 417, 685, 809
AluI AGCT 6 cut(s) 31, 56, 349, 417, 685, 809
Alw21I GWGCWC 2 cut(s) 687, 811
AlwI GGATC 5 cut(s) 119, 229, 380, 393, 485
Ama87I CYCGRG 2 cut(s) 323, 479
AoxI GGCC 4 cut(s) 3, 36, 166, 221
ApeKI GCWGC 2 cut(s) 254, 349
ApoI RAATTY 1 cut(s) 829
ArsI GACNNNNNNTTYG 6 cut(s) 45, 57, 77, 89, 546, 578
AspS9I GGNCC 3 cut(s) 196, 899, 1066
AsuC2I CCSGG 1 cut(s) 518
AsuHPI GGTGA 4 cut(s) 79, 215, 244, 373
AvaI CYCGRG 2 cut(s) 323, 479
AvaII GGWCC 3 cut(s) 196, 899, 1066
BalI TGGCCA 2 cut(s) 5, 168
BamHI GGATCC 1 cut(s) 385
BanII GRGCYC 2 cut(s) 687, 811
BarI GAAGNNNNNNTAC 4 cut(s) 356, 388, 389, 421
Bbv12I GWGCWC 2 cut(s) 687, 811
BbvCI CCTCAGC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 241, 336
BccI CCATC 4 cut(s) 74, 106, 618, 707
BciT130I CCWGG 2 cut(s) 448, 804
BciVI GTATCC 1 cut(s) 288
BclI TGATCA 1 cut(s) 871
BcnI CCSGG 1 cut(s) 518
BfaI CTAG 2 cut(s) 381, 651
BfmI CTRYAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 940
BfuI GTATCC 1 cut(s) 288
BisI GCNGC 2 cut(s) 255, 350
BlsI GCNGC 2 cut(s) 256, 351
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 3 cut(s) 448, 518, 804
Bme18I GGWCC 3 cut(s) 196, 899, 1066
BmeT110I CYCGRG 2 cut(s) 323, 479
BmgT120I GGNCC 3 cut(s) 196, 899, 1066
BmiI GGNNCC 3 cut(s) 387, 477, 1068
BmrFI CCNGG 3 cut(s) 448, 518, 804
BmsI GCATC 2 cut(s) 309, 649
BpmI CTGGAG 2 cut(s) 469, 825
Bpu10I CCTNAGC 4 cut(s) 130, 228, 675, 681
BpuMI CCSGG 1 cut(s) 518
BsaHI GRCGYC 1 cut(s) 141
BsaJI CCNNGG 4 cut(s) 135, 199, 289, 353
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 803
Bse1I ACTGG 4 cut(s) 169, 188, 430, 778
BseBI CCWGG 2 cut(s) 448, 804
BseDI CCNNGG 4 cut(s) 135, 199, 289, 353
BseGI GGATG 2 cut(s) 98, 923
BseLI CCNNNNNNNGG 2 cut(s) 152, 803
BseMII CTCAG 6 cut(s) 144, 360, 599, 666, 672, 723
BseNI ACTGG 4 cut(s) 169, 188, 430, 778
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 241, 336
Bsh1236I CGCG 1 cut(s) 334
BshFI GGCC 4 cut(s) 5, 38, 168, 223
BsiHKAI GWGCWC 2 cut(s) 687, 811
BsiHKCI CYCGRG 2 cut(s) 323, 479
BsiSI CCGG 1 cut(s) 517
BslFI GGGAC 4 cut(s) 80, 128, 467, 1052
BslI CCNNNNNNNGG 2 cut(s) 152, 803
BsmFI GGGAC 4 cut(s) 80, 128, 467, 1052
BsnI GGCC 4 cut(s) 5, 38, 168, 223
BsoBI CYCGRG 2 cut(s) 323, 479
Bsp1286I GDGCHC 2 cut(s) 687, 811
Bsp143I GATC 6 cut(s) 124, 234, 385, 490, 742, 871
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 1 cut(s) 250
BspANI GGCC 4 cut(s) 5, 38, 168, 223
BspCNI CTCAG 6 cut(s) 143, 361, 598, 667, 673, 722
BspFNI CGCG 1 cut(s) 334
BspHI TCATGA 1 cut(s) 343
BspLI GGNNCC 3 cut(s) 387, 477, 1068
BspMAI CTGCAG 1 cut(s) 259
BspMI ACCTGC 1 cut(s) 940
BspPI GGATC 5 cut(s) 119, 229, 380, 393, 485
BspQI GCTCTTC 1 cut(s) 9
BsrI ACTGG 4 cut(s) 169, 188, 430, 778
BssECI CCNNGG 4 cut(s) 135, 199, 289, 353
BssMI GATC 6 cut(s) 124, 234, 385, 490, 742, 871
BssNI GRCGYC 1 cut(s) 141
BssT1I CCWWGG 3 cut(s) 199, 289, 353
Bst2UI CCWGG 2 cut(s) 448, 804
Bst4CI ACNGT 1 cut(s) 307
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 141
BstC8I GCNNGC 3 cut(s) 116, 225, 252
BstDEI CTNAG 7 cut(s) 130, 228, 369, 585, 675, 681, 709
BstDSI CCRYGG 1 cut(s) 289
BstF5I GGATG 2 cut(s) 98, 923
BstFNI CGCG 1 cut(s) 334
BstKTI GATC 6 cut(s) 127, 237, 388, 493, 745, 874
BstMBI GATC 6 cut(s) 124, 234, 385, 490, 742, 871
BstNI CCWGG 2 cut(s) 448, 804
BstNSI RCATGY 2 cut(s) 463, 987
BstSCI CCNGG 3 cut(s) 446, 516, 802
BstSFI CTRYAG 1 cut(s) 255
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 241, 336
BstX2I RGATCY 2 cut(s) 124, 385
BstXI CCANNNNNNTGG 1 cut(s) 713
BstYI RGATCY 2 cut(s) 124, 385
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 4 cut(s) 5, 38, 168, 223
BtgI CCRYGG 1 cut(s) 289
BtsCI GGATG 2 cut(s) 98, 923
BtsIMutI CAGTG 2 cut(s) 312, 785
BveI ACCTGC 1 cut(s) 940
Cac8I GCNNGC 3 cut(s) 116, 225, 252
CciI TCATGA 1 cut(s) 343
Cfr13I GGNCC 3 cut(s) 196, 899, 1066
CseI GACGC 2 cut(s) 8, 340
Csp6I GTAC 4 cut(s) 373, 427, 548, 961
CviAII CATG 7 cut(s) 290, 344, 391, 460, 472, 669, 984
CviQI GTAC 4 cut(s) 373, 427, 548, 961
DdeI CTNAG 7 cut(s) 130, 228, 369, 585, 675, 681, 709
DpnI GATC 6 cut(s) 126, 236, 387, 492, 744, 873
DpnII GATC 6 cut(s) 124, 234, 385, 490, 742, 871
EaeI YGGCCR 2 cut(s) 3, 166
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Ecl136II GAGCTC 2 cut(s) 685, 809
Eco130I CCWWGG 3 cut(s) 199, 289, 353
Eco147I AGGCCT 2 cut(s) 38, 223
Eco24I GRGCYC 2 cut(s) 687, 811
Eco32I GATATC 1 cut(s) 244
Eco47I GGWCC 3 cut(s) 196, 899, 1066
Eco53kI GAGCTC 2 cut(s) 685, 809
Eco57I CTGAAG 3 cut(s) 33, 394, 743
Eco88I CYCGRG 2 cut(s) 323, 479
EcoICRI GAGCTC 2 cut(s) 685, 809
EcoO109I RGGNCCY 1 cut(s) 1066
EcoRII CCWGG 2 cut(s) 446, 802
EcoRV GATATC 1 cut(s) 244
EcoT14I CCWWGG 3 cut(s) 199, 289, 353
EcoT38I GRGCYC 2 cut(s) 687, 811
ErhI CCWWGG 3 cut(s) 199, 289, 353
FaeI CATG 7 cut(s) 293, 347, 394, 463, 475, 672, 987
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 4 cut(s) 80, 128, 467, 1052
FatI CATG 7 cut(s) 289, 343, 390, 459, 471, 668, 983
FauI CCCGC 1 cut(s) 243
FbaI TGATCA 1 cut(s) 871
Fnu4HI GCNGC 2 cut(s) 255, 350
FokI GGATG 2 cut(s) 85, 930
FriOI GRGCYC 2 cut(s) 687, 811
Fsp4HI GCNGC 2 cut(s) 255, 350
FspBI CTAG 2 cut(s) 381, 651
GluI GCNGC 2 cut(s) 255, 350
GsuI CTGGAG 2 cut(s) 469, 825
HaeIII GGCC 4 cut(s) 5, 38, 168, 223
HapII CCGG 1 cut(s) 517
HgaI GACGC 2 cut(s) 8, 340
Hin1I GRCGYC 1 cut(s) 141
Hin1II CATG 7 cut(s) 293, 347, 394, 463, 475, 672, 987
HincII GTYRAC 3 cut(s) 286, 820, 981
HindII GTYRAC 3 cut(s) 286, 820, 981
HinfI GANTC 3 cut(s) 47, 84, 597
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 1 cut(s) 517
HphI GGTGA 4 cut(s) 79, 215, 244, 373
Hpy166II GTNNAC 6 cut(s) 196, 286, 550, 755, 820, 981
Hpy188I TCNGA 3 cut(s) 712, 929, 943
Hpy188III TCNNGA 5 cut(s) 344, 479, 488, 674, 740
Hpy8I GTNNAC 6 cut(s) 196, 286, 550, 755, 820, 981
Hpy99I CGWCG 3 cut(s) 334, 943, 955
HpyAV CCTTC 4 cut(s) 213, 358, 391, 890
HpyCH4III ACNGT 1 cut(s) 307
HpyCH4IV ACGT 2 cut(s) 141, 938
HpyCH4V TGCA 5 cut(s) 114, 257, 769, 838, 987
HpyF3I CTNAG 7 cut(s) 130, 228, 369, 585, 675, 681, 709
HpySE526I ACGT 2 cut(s) 141, 938
Hsp92I GRCGYC 1 cut(s) 141
Hsp92II CATG 7 cut(s) 293, 347, 394, 463, 475, 672, 987
Ksp22I TGATCA 1 cut(s) 871
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 6 cut(s) 124, 234, 385, 490, 742, 871
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 2 cut(s) 481, 806
Lsp1109I GCAGC 2 cut(s) 241, 336
LweI GCATC 2 cut(s) 309, 649
MaeI CTAG 2 cut(s) 381, 651
MaeII ACGT 2 cut(s) 141, 938
MaeIII GTNAC 3 cut(s) 467, 562, 653
MalI GATC 6 cut(s) 126, 236, 387, 492, 744, 873
MboI GATC 6 cut(s) 124, 234, 385, 490, 742, 871
MboII GAAGA 3 cut(s) 26, 134, 785
MfeI CAATTG 1 cut(s) 690
MflI RGATCY 2 cut(s) 124, 385
MhlI GDGCHC 2 cut(s) 687, 811
MlsI TGGCCA 2 cut(s) 5, 168
MluI ACGCGT 1 cut(s) 332
MluNI TGGCCA 2 cut(s) 5, 168
MlyI GAGTC 1 cut(s) 591
MmeI TCCRAC 4 cut(s) 185, 291, 921, 952
Mox20I TGGCCA 2 cut(s) 5, 168
MscI TGGCCA 2 cut(s) 5, 168
MseI TTAA 2 cut(s) 285, 972
MslI CAYNNNNRTG 2 cut(s) 711, 750
Msp20I TGGCCA 2 cut(s) 5, 168
MspI CCGG 1 cut(s) 517
MspR9I CCNGG 3 cut(s) 448, 518, 804
MunI CAATTG 1 cut(s) 690
MvaI CCWGG 2 cut(s) 448, 804
MvnI CGCG 1 cut(s) 334
NciI CCSGG 1 cut(s) 518
NcoI CCATGG 1 cut(s) 289
NdeII GATC 6 cut(s) 124, 234, 385, 490, 742, 871
NlaIII CATG 7 cut(s) 293, 347, 394, 463, 475, 672, 987
NlaIV GGNNCC 3 cut(s) 387, 477, 1068
NmeAIII GCCGAG 1 cut(s) 160
NmuCI GTSAC 3 cut(s) 467, 562, 653
NspI RCATGY 2 cut(s) 463, 987
PaeR7I CTCGAG 1 cut(s) 323
PagI TCATGA 1 cut(s) 343
PceI AGGCCT 2 cut(s) 38, 223
PciSI GCTCTTC 1 cut(s) 9
PcsI WCGNNNNNNNCGW 1 cut(s) 947
PfeI GAWTC 2 cut(s) 47, 84
PkrI GCNGC 2 cut(s) 256, 351
PleI GAGTC 1 cut(s) 591
PpsI GAGTC 1 cut(s) 591
PpuMI RGGWCCY 1 cut(s) 1066
Psp124BI GAGCTC 2 cut(s) 687, 811
Psp5II RGGWCCY 1 cut(s) 1066
Psp6I CCWGG 2 cut(s) 446, 802
PspGI CCWGG 2 cut(s) 446, 802
PspN4I GGNNCC 3 cut(s) 387, 477, 1068
PspPI GGNCC 3 cut(s) 196, 899, 1066
PspPPI RGGWCCY 1 cut(s) 1066
PspXI VCTCGAGB 1 cut(s) 323
PstI CTGCAG 1 cut(s) 259
PsuI RGATCY 2 cut(s) 124, 385
RsaI GTAC 4 cut(s) 374, 428, 549, 962
RsaNI GTAC 4 cut(s) 373, 427, 548, 961
RseI CAYNNNNRTG 2 cut(s) 711, 750
SacI GAGCTC 2 cut(s) 687, 811
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 2 cut(s) 285, 972
SatI GCNGC 2 cut(s) 255, 350
Sau3AI GATC 6 cut(s) 124, 234, 385, 490, 742, 871
Sau96I GGNCC 3 cut(s) 196, 899, 1066
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 1 cut(s) 591
ScrFI CCNGG 3 cut(s) 448, 518, 804
SduI GDGCHC 2 cut(s) 687, 811
SfaNI GCATC 2 cut(s) 309, 649
SfcI CTRYAG 1 cut(s) 255
Sfr274I CTCGAG 1 cut(s) 323
SinI GGWCC 3 cut(s) 196, 899, 1066
SlaI CTCGAG 1 cut(s) 323
SmiMI CAYNNNNRTG 2 cut(s) 711, 750
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SseBI AGGCCT 2 cut(s) 38, 223
SsiI CCGC 1 cut(s) 250
SspI AATATT 1 cut(s) 1031
SspMI CTAG 2 cut(s) 381, 651
SstI GAGCTC 2 cut(s) 687, 811
StuI AGGCCT 2 cut(s) 38, 223
StyD4I CCNGG 3 cut(s) 446, 516, 802
StyI CCWWGG 3 cut(s) 199, 289, 353
TaaI ACNGT 1 cut(s) 307
TaiI ACGT 2 cut(s) 144, 941
TaqI TCGA 4 cut(s) 75, 324, 953, 1009
TatI WGTACW 2 cut(s) 372, 547
TfiI GAWTC 2 cut(s) 47, 84
Tru1I TTAA 2 cut(s) 285, 972
Tru9I TTAA 2 cut(s) 285, 972
TscAI CASTG 2 cut(s) 312, 785
TseFI GTSAC 3 cut(s) 467, 562, 653
TseI GCWGC 2 cut(s) 254, 349
Tsp45I GTSAC 3 cut(s) 467, 562, 653
TspDTI ATGAA 3 cut(s) 97, 332, 712
TspGWI ACGGA 1 cut(s) 1052
TspRI CASTG 2 cut(s) 312, 785
VpaK11BI GGWCC 3 cut(s) 196, 899, 1066
XapI RAATTY 1 cut(s) 829
XceI RCATGY 2 cut(s) 463, 987
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XhoI CTCGAG 1 cut(s) 323
XspI CTAG 2 cut(s) 381, 651
ZraI GACGTC 1 cut(s) 142
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.