Rh4AG040500

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
8482026 .. 8503162
21137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG040500.1

Sequence Viewer

Length: 333 bp
ATGCAAGATTCCTCATATATCTATTTGATAAAGAAGGACTATGATTTTTGTTTGGGGAGGGAGTTACCAGATTTCGTAAACATGGTCTCCGGGAATTCAATCTACCCAGACCGTCTCCAGCAGCTGAAGGCCTTCGACGAATCCAAAGCTGGGGTCAAAGGAATCGTTGATGCCGGAATCACCAAAGTCCCACCAATTTTCGTTTGGCCGCAGAAAGACGACAAGATCTACAGCCGACCAACCCAAGCTCATTTCACTATCCCAGTCGTCGACCTCGCTGACAATGCCGGCAGTCATGCTGAGGTGGTCGACGGAGTCCGAAGGGCCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.26

Weight (kDa)

5.56

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 270, 309
AciI CCGC 2 cut(s) 209, 327
AcoI YGGCCR 1 cut(s) 206
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 150
AgsI TTSAA 1 cut(s) 99
AluBI AGCT 3 cut(s) 124, 149, 248
AluI AGCT 3 cut(s) 124, 149, 248
Alw26I GTCTC 2 cut(s) 91, 119
AlwNI CAGNNNCTG 1 cut(s) 124
AoxI GGCC 3 cut(s) 129, 206, 324
ApeKI GCWGC 1 cut(s) 121
ApoI RAATTY 1 cut(s) 94
ArsI GACNNNNNNTTYG 2 cut(s) 138, 170
Asp700I GAANNNNTTC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 324
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 172
BbvCI CCTCAGC 1 cut(s) 300
BbvI GCAGC 1 cut(s) 133
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 91, 119
BfmI CTRYAG 1 cut(s) 229
BglII AGATCT 1 cut(s) 225
BisI GCNGC 3 cut(s) 122, 209, 327
BlsI GCNGC 3 cut(s) 123, 210, 328
Bme1390I CCNGG 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 324
BmrFI CCNGG 1 cut(s) 91
BmrI ACTGGG 1 cut(s) 257
BmsI GCATC 1 cut(s) 160
BmuI ACTGGG 1 cut(s) 257
BpmI CTGGAG 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 300
BpuMI CCSGG 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 150
Bse118I RCCGGY 1 cut(s) 287
Bse1I ACTGG 1 cut(s) 263
BseLI CCNNNNNNNGG 1 cut(s) 150
BseMII CTCAG 1 cut(s) 291
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 133
BseYI CCCAGC 1 cut(s) 149
BshFI GGCC 3 cut(s) 131, 208, 326
BsiSI CCGG 3 cut(s) 90, 174, 288
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 150
BsmAI GTCTC 2 cut(s) 91, 119
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 3 cut(s) 131, 208, 326
Bso31I GGTCTC 1 cut(s) 91
Bsp143I GATC 1 cut(s) 225
BspACI CCGC 2 cut(s) 209, 327
BspANI GGCC 3 cut(s) 131, 208, 326
BspCNI CTCAG 1 cut(s) 292
BspTNI GGTCTC 1 cut(s) 91
BsrFI RCCGGY 1 cut(s) 287
BsrI ACTGG 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 287
BssMI GATC 1 cut(s) 225
Bst4CI ACNGT 1 cut(s) 113
BstC8I GCNNGC 1 cut(s) 289
BstDEI CTNAG 1 cut(s) 300
BstKTI GATC 1 cut(s) 228
BstMAI GTCTC 2 cut(s) 91, 119
BstMBI GATC 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 225
BstYI RGATCY 1 cut(s) 225
BsuRI GGCC 3 cut(s) 131, 208, 326
Cac8I GCNNGC 1 cut(s) 289
CaiI CAGNNNCTG 1 cut(s) 124
Cfr10I RCCGGY 1 cut(s) 287
Cfr13I GGNCC 1 cut(s) 324
CviAII CATG 2 cut(s) 82, 296
CviJI RGCY 7 cut(s) 124, 131, 149, 208, 234, 248, 326
CviKI_1 RGCY 7 cut(s) 124, 131, 149, 208, 234, 248, 326
DdeI CTNAG 1 cut(s) 300
DpnI GATC 1 cut(s) 227
DpnII GATC 1 cut(s) 225
EaeI YGGCCR 1 cut(s) 206
Eco147I AGGCCT 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 146
EcoRI GAATTC 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 2 cut(s) 85, 299
FaiI YATR 6 cut(s) 16, 18, 42, 83, 297, 331
FaqI GGGAC 1 cut(s) 173
FatI CATG 2 cut(s) 81, 295
FblI GTMKAC 2 cut(s) 270, 309
Fnu4HI GCNGC 3 cut(s) 122, 209, 327
Fsp4HI GCNGC 3 cut(s) 122, 209, 327
GluI GCNGC 3 cut(s) 122, 209, 327
GsaI CCCAGC 1 cut(s) 153
GsuI CTGGAG 1 cut(s) 101
HaeIII GGCC 3 cut(s) 131, 208, 326
HapII CCGG 3 cut(s) 90, 174, 288
Hin1II CATG 2 cut(s) 85, 299
HincII GTYRAC 2 cut(s) 271, 310
HindII GTYRAC 2 cut(s) 271, 310
HinfI GANTC 5 cut(s) 8, 140, 162, 177, 315
HpaII CCGG 3 cut(s) 90, 174, 288
HphI GGTGA 1 cut(s) 172
Hpy166II GTNNAC 3 cut(s) 79, 271, 310
Hpy188I TCNGA 1 cut(s) 320
Hpy8I GTNNAC 3 cut(s) 79, 271, 310
Hpy99I CGWCG 3 cut(s) 140, 272, 314
HpyAV CCTTC 4 cut(s) 28, 121, 142, 315
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 300
Hsp92II CATG 2 cut(s) 85, 299
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Kzo9I GATC 1 cut(s) 225
LpnPI CCDG 8 cut(s) 81, 103, 120, 131, 135, 187, 276, 301
Lsp1109I GCAGC 1 cut(s) 133
LweI GCATC 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 63
MalI GATC 1 cut(s) 227
MboI GATC 1 cut(s) 225
MflI RGATCY 1 cut(s) 225
MluCI AATT 2 cut(s) 94, 195
MlyI GAGTC 1 cut(s) 324
MnlI CCTC 4 cut(s) 22, 51, 284, 295
MroNI GCCGGC 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 131
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 3 cut(s) 90, 174, 288
MspR9I CCNGG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 284
NaeI GCCGGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 225
NgoMIV GCCGGC 1 cut(s) 287
NlaIII CATG 2 cut(s) 85, 299
PceI AGGCCT 1 cut(s) 131
PdiI GCCGGC 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 4 cut(s) 8, 140, 162, 177
PflFI GACNNNGTC 1 cut(s) 314
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 3 cut(s) 123, 210, 328
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PspFI CCCAGC 1 cut(s) 149
PspPI GGNCC 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 225
PsyI GACNNNGTC 1 cut(s) 314
PvuII CAGCTG 1 cut(s) 124
SalI GTCGAC 2 cut(s) 269, 308
SatI GCNGC 3 cut(s) 122, 209, 327
Sau3AI GATC 1 cut(s) 225
Sau96I GGNCC 1 cut(s) 324
SchI GAGTC 1 cut(s) 324
ScrFI CCNGG 1 cut(s) 91
SetI ASST 5 cut(s) 126, 151, 250, 276, 306
SfaNI GCATC 1 cut(s) 160
SfcI CTRYAG 1 cut(s) 229
Sse9I AATT 2 cut(s) 94, 195
SseBI AGGCCT 1 cut(s) 131
SsiI CCGC 2 cut(s) 209, 327
StuI AGGCCT 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 89
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 3 cut(s) 135, 270, 309
TasI AATT 2 cut(s) 94, 195
TauI GCSGC 2 cut(s) 211, 329
TfiI GAWTC 4 cut(s) 8, 140, 162, 177
TseI GCWGC 1 cut(s) 121
TspGWI ACGGA 1 cut(s) 327
Tth111I GACNNNGTC 1 cut(s) 314
XapI RAATTY 1 cut(s) 94
XcmI CCANNNNNNNNNTGG 1 cut(s) 201
XmiI GTMKAC 2 cut(s) 270, 309
XmnI GAANNNNTTC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.