RchiOBHm_Chr4g0392061

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000054
Physical Location & Seq
Forward (+)
7481439 .. 7481678
240 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36484

Sequence Viewer

Length: 240 bp
ATGATGAAGAGCTTCTGTGGAAATGAGGTTCCAACAAAGTATCACAGAACAAATGAACTAAAAGCTTTTAATGACACAAAGGAAGGTGTTAAAGGCCTTTTCGATGCTGGCATTAGCGAGATTCCTCGAATTTTTTGTCATCCACATGATGAGTACTCCATTAAACAATACCTCTTATTCAGAGGAAGCCTGGTTTACCAATACAGTCATAGACCTCAAAGTTCTCCTAGATCCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

79

Amino Acids

9.2

Weight (kDa)

9.0

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 129
AfaI GTAC 1 cut(s) 155
AjnI CCWGG 1 cut(s) 189
AloI GAACNNNNNNTCC 2 cut(s) 12, 44
AluBI AGCT 2 cut(s) 12, 65
AluI AGCT 2 cut(s) 12, 65
AlwI GGATC 1 cut(s) 225
AoxI GGCC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 129
ArsI GACNNNNNNTTYG 2 cut(s) 121, 153
Asp700I GAANNNNTTC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 191
BfaI CTAG 1 cut(s) 228
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 94
BseBI CCWGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 139
BshFI GGCC 1 cut(s) 96
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 230
BspANI GGCC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 1 cut(s) 225
BspQI GCTCTTC 1 cut(s) 2
BssMI GATC 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 191
Bst4CI ACNGT 1 cut(s) 206
Bst6I CTCTTC 1 cut(s) 2
BstC8I GCNNGC 1 cut(s) 109
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 1 cut(s) 233
BstMBI GATC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BsuRI GGCC 1 cut(s) 96
BtsCI GGATG 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 154
CviAII CATG 1 cut(s) 146
CviJI RGCY 4 cut(s) 12, 65, 96, 189
CviKI_1 RGCY 4 cut(s) 12, 65, 96, 189
CviQI GTAC 1 cut(s) 154
DpnI GATC 1 cut(s) 232
DpnII GATC 1 cut(s) 230
Eam1104I CTCTTC 1 cut(s) 2
EarI CTCTTC 1 cut(s) 2
Eco147I AGGCCT 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 149
FaiI YATR 2 cut(s) 147, 210
FatI CATG 1 cut(s) 145
FokI GGATG 1 cut(s) 126
FspBI CTAG 1 cut(s) 228
HaeIII GGCC 1 cut(s) 96
Hin1II CATG 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 63
HinfI GANTC 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 206
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 230
LguI GCTCTTC 1 cut(s) 2
LpnPI CCDG 3 cut(s) 93, 176, 203
LweI GCATC 1 cut(s) 94
MaeI CTAG 1 cut(s) 228
MalI GATC 1 cut(s) 232
MboI GATC 1 cut(s) 230
MboII GAAGA 1 cut(s) 19
MflI RGATCY 1 cut(s) 230
MluCI AATT 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 56
MnlI CCTC 5 cut(s) 19, 135, 176, 182, 225
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 3 cut(s) 69, 90, 162
MslI CAYNNNNRTG 1 cut(s) 144
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
NdeII GATC 1 cut(s) 230
NlaIII CATG 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 30
PceI AGGCCT 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 2
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 1 cut(s) 121
Psp6I CCWGG 1 cut(s) 189
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 30
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
RseI CAYNNNNRTG 1 cut(s) 144
SapI GCTCTTC 1 cut(s) 2
SaqAI TTAA 3 cut(s) 69, 90, 162
Sau3AI GATC 1 cut(s) 230
ScaI AGTACT 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 191
SetI ASST 6 cut(s) 14, 30, 67, 88, 174, 217
SfaNI GCATC 1 cut(s) 94
SgeI CNNG 6 cut(s) 120, 130, 138, 158, 202, 203
SmiMI CAYNNNNRTG 1 cut(s) 144
Sse9I AATT 1 cut(s) 129
SseBI AGGCCT 1 cut(s) 96
SspMI CTAG 1 cut(s) 228
StuI AGGCCT 1 cut(s) 96
StyD4I CCNGG 1 cut(s) 189
TaaI ACNGT 1 cut(s) 206
TaqI TCGA 2 cut(s) 102, 127
TasI AATT 1 cut(s) 129
TatI WGTACW 1 cut(s) 153
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 3 cut(s) 69, 90, 162
Tru9I TTAA 3 cut(s) 69, 90, 162
TspDTI ATGAA 2 cut(s) 20, 69
XapI RAATTY 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 1 cut(s) 228
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.