Rw4G003180

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
6282007 .. 6282850
844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G003180.1

Sequence Viewer

Length: 552 bp
ATGGGGCTTCTTCCAGATAGTCAAGTTGCTGTTCTTGACGAGATTCAAAATGGGGTACGTGGATTTTATGATCAAGAAGCTGAGGTGAAGAAACAGTTTTACAGTCGCGATGACTTCAGCAGGCCTTTGCAGTACAACAGCAACTTTGATCTATATAGTGCGCCGTCAACTAATTGGAGGGACACTTTCATGTGTTACATGGCTCCCACTCCAACAAAGCCAGAAGACTTGCCCCAAGTATTCAGAGACGAAATTGCTGACTACTCGAAGGAACTAATGAAGTTGGGGAAGATATTGTTTGAGTTGTTGTCCGAGGCTCTTGGACTCGAGCCAAGTCACTTGAATGACATAGATTGTGGTGAGGGGCTTCTGGTTTTAGGCCATTACTATCCTGCTTGTCCACAACCGGAATTAACTTTAGGCACAAGCAAGCATGCGGACGGTGGCTTCATCACAGTCCTCTTGCAAGATCATATCGGTGGTCTACAGGTTCTTCATCAGAACAAGTGGATTGATGTTCCTCCTGTGACTGGGGCTCTAGCTAGTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

183

Amino Acids

20.41

Weight (kDa)

4.58

Isoelectric Point (pI)

55.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 126 - 180 2.7e-16 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 484
AccII CGCG 1 cut(s) 108
AciI CCGC 1 cut(s) 437
AcuI CTGAAG 1 cut(s) 100
AfaI GTAC 2 cut(s) 57, 134
AfiI CCNNNNNNNGG 1 cut(s) 530
AgsI TTSAA 2 cut(s) 47, 343
AluBI AGCT 2 cut(s) 80, 542
AluI AGCT 2 cut(s) 80, 542
Alw26I GTCTC 1 cut(s) 240
Ama87I CYCGRG 1 cut(s) 326
AoxI GGCC 2 cut(s) 122, 379
AspLEI GCGC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 97, 371
AvaI CYCGRG 1 cut(s) 326
BanII GRGCYC 1 cut(s) 538
BbsI GAAGAC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 148
BclI TGATCA 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 240
BfaI CTAG 2 cut(s) 539, 543
BfmI CTRYAG 1 cut(s) 485
BmeT110I CYCGRG 1 cut(s) 326
BmiI GGNNCC 1 cut(s) 204
BmrI ACTGGG 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 540
BpiI GAAGAC 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 81
BsaAI YACGTR 1 cut(s) 59
BsaJI CCNNGG 1 cut(s) 312
BsaWI WCCGGW 1 cut(s) 406
Bsc4I CCNNNNNNNGG 1 cut(s) 530
Bse1I ACTGG 1 cut(s) 535
BseDI CCNNGG 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 530
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 1 cut(s) 535
Bsh1236I CGCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 124, 381
BsiHKCI CYCGRG 1 cut(s) 326
BsiSI CCGG 1 cut(s) 407
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 530
BsmAI GTCTC 1 cut(s) 240
BsmBI CGTCTC 1 cut(s) 240
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 2 cut(s) 124, 381
BsoBI CYCGRG 1 cut(s) 326
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 3 cut(s) 70, 148, 469
Bsp68I TCGCGA 1 cut(s) 108
BspACI CCGC 1 cut(s) 437
BspANI GGCC 2 cut(s) 124, 381
BspCNI CTCAG 1 cut(s) 73
BspFNI CGCG 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 204
BsrI ACTGG 1 cut(s) 535
BssECI CCNNGG 1 cut(s) 312
BssMI GATC 3 cut(s) 70, 148, 469
Bst4CI ACNGT 4 cut(s) 96, 104, 443, 457
BstBAI YACGTR 1 cut(s) 59
BstC8I GCNNGC 3 cut(s) 122, 431, 435
BstDEI CTNAG 1 cut(s) 81
BstFNI CGCG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 3 cut(s) 73, 151, 472
BstMAI GTCTC 1 cut(s) 240
BstMBI GATC 3 cut(s) 70, 148, 469
BstNSI RCATGY 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 485
BstUI CGCG 1 cut(s) 108
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 124, 381
BtgZI GCGATG 1 cut(s) 123
BtuMI TCGCGA 1 cut(s) 108
Cac8I GCNNGC 3 cut(s) 122, 431, 435
CfoI GCGC 1 cut(s) 163
Csp6I GTAC 2 cut(s) 56, 133
CviAII CATG 3 cut(s) 190, 199, 434
CviQI GTAC 2 cut(s) 56, 133
DdeI CTNAG 1 cut(s) 81
DpnI GATC 3 cut(s) 72, 150, 471
DpnII GATC 3 cut(s) 70, 148, 469
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 1 cut(s) 538
Eco57I CTGAAG 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 538
Esp3I CGTCTC 1 cut(s) 240
FaeI CATG 3 cut(s) 193, 202, 437
FaiI YATR 8 cut(s) 69, 154, 156, 191, 200, 350, 435, 474
FaqI GGGAC 1 cut(s) 194
FatI CATG 3 cut(s) 189, 198, 433
FbaI TGATCA 1 cut(s) 70
FblI GTMKAC 1 cut(s) 484
FriOI GRGCYC 1 cut(s) 538
FspBI CTAG 2 cut(s) 539, 543
GlaI GCGC 1 cut(s) 162
HaeIII GGCC 2 cut(s) 124, 381
HapII CCGG 1 cut(s) 407
HhaI GCGC 1 cut(s) 163
Hin1II CATG 3 cut(s) 193, 202, 437
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 1 cut(s) 168
HindII GTYRAC 1 cut(s) 168
HinfI GANTC 2 cut(s) 43, 324
HpaII CCGG 1 cut(s) 407
HphI GGTGA 2 cut(s) 97, 371
Hpy166II GTNNAC 3 cut(s) 168, 401, 485
Hpy188I TCNGA 3 cut(s) 245, 313, 501
Hpy188III TCNNGA 4 cut(s) 14, 35, 74, 107
Hpy8I GTNNAC 3 cut(s) 168, 401, 485
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 4 cut(s) 96, 104, 443, 457
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 2 cut(s) 130, 466
HpyF3I CTNAG 1 cut(s) 81
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 3 cut(s) 193, 202, 437
HspAI GCGC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 3 cut(s) 70, 148, 469
LmnI GCTCC 1 cut(s) 208
LpnPI CCDG 9 cut(s) 27, 106, 234, 356, 405, 420, 473, 516, 537
MaeI CTAG 2 cut(s) 539, 543
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 3 cut(s) 194, 335, 526
MalI GATC 3 cut(s) 72, 150, 471
MboI GATC 3 cut(s) 70, 148, 469
MboII GAAGA 4 cut(s) 100, 236, 301, 485
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 3 cut(s) 172, 252, 410
MlyI GAGTC 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 6 cut(s) 76, 171, 307, 355, 470, 531
MseI TTAA 2 cut(s) 413, 550
MslI CAYNNNNRTG 3 cut(s) 188, 342, 477
MspI CCGG 1 cut(s) 407
MvnI CGCG 1 cut(s) 108
NdeII GATC 3 cut(s) 70, 148, 469
NlaIII CATG 3 cut(s) 193, 202, 437
NlaIV GGNNCC 1 cut(s) 204
NmuCI GTSAC 2 cut(s) 335, 526
NruI TCGCGA 1 cut(s) 108
NspI RCATGY 1 cut(s) 437
PaeI GCATGC 1 cut(s) 437
PaeR7I CTCGAG 1 cut(s) 326
PceI AGGCCT 1 cut(s) 124
PfeI GAWTC 1 cut(s) 43
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
Ppu21I YACGTR 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 204
PspXI VCTCGAGB 1 cut(s) 326
RruI TCGCGA 1 cut(s) 108
RsaI GTAC 2 cut(s) 57, 134
RsaNI GTAC 2 cut(s) 56, 133
RseI CAYNNNNRTG 3 cut(s) 188, 342, 477
SaqAI TTAA 2 cut(s) 413, 550
Sau3AI GATC 3 cut(s) 70, 148, 469
SchI GAGTC 1 cut(s) 318
SduI GDGCHC 1 cut(s) 538
SetI ASST 5 cut(s) 61, 82, 87, 492, 544
SfcI CTRYAG 1 cut(s) 485
Sfr274I CTCGAG 1 cut(s) 326
SlaI CTCGAG 1 cut(s) 326
SmiMI CAYNNNNRTG 3 cut(s) 188, 342, 477
SmlI CTYRAG 1 cut(s) 326
SmoI CTYRAG 1 cut(s) 326
SphI GCATGC 1 cut(s) 437
Sse9I AATT 3 cut(s) 172, 252, 410
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 1 cut(s) 437
SspMI CTAG 2 cut(s) 539, 543
StuI AGGCCT 1 cut(s) 124
TaaI ACNGT 4 cut(s) 96, 104, 443, 457
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 266, 327
TasI AATT 3 cut(s) 172, 252, 410
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 2 cut(s) 413, 550
Tru9I TTAA 2 cut(s) 413, 550
TseFI GTSAC 2 cut(s) 335, 526
Tsp45I GTSAC 2 cut(s) 335, 526
TspDTI ATGAA 4 cut(s) 178, 293, 439, 485
XceI RCATGY 1 cut(s) 437
XhoI CTCGAG 1 cut(s) 326
XmiI GTMKAC 1 cut(s) 484
XspI CTAG 2 cut(s) 539, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.