RLG00000009848

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
58878945 .. 58879759
815 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009848

Sequence Viewer

Length: 468 bp
ATGAAGTTGGGGAAGCTATTGTTTGAGTTGTTGTCCGAGGCTCTTGGGCTAAATCCAAGTCACTTGAATGACATAGATTGCAGTGAGGGGCTTATAGTTTTAGGCCATTACTATCCTGCTTGTCCACAACCAGAGTTAACAATAGGCTTAAGCAAGCATGCAGATAATAACTTCATGACTATCCTTCTGCAAGATAATATTGGTGGTCTTCAACTTATATCAAATGACAGATTCAAGAGTGTAGAGCACAGGGTACTGGCAAACCATAGAGGTCCCAGGGTATCAGTTGCAAGCTTTTTCAGCACAGGATTGCTGCCATCGACAAAGCTCTACGGACCCATCAAGGAGTTATTATCAGAAGACAATCCTCCAAAGTACAGGGAGACCACTACTGTAAGGGACTACAATGCCTACTATGTTAAAAAAGGCCTCGATGGGAAATCTGCCTTGTCTCATTTTAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

156

Amino Acids

17.26

Weight (kDa)

7.8

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 33 - 72 2.1e-10 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 2 cut(s) 255, 377
AflII CTTAAG 1 cut(s) 148
AgsI TTSAA 3 cut(s) 67, 212, 235
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 4 cut(s) 16, 294, 328, 463
AluI AGCT 4 cut(s) 16, 294, 328, 463
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 2 cut(s) 377, 456
AoxI GGCC 2 cut(s) 103, 427
ApeKI GCWGC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 272, 335
AvaII GGWCC 2 cut(s) 272, 335
BbsI GAAGAC 2 cut(s) 200, 366
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 300
BccI CCATC 3 cut(s) 325, 347, 428
BciT130I CCWGG 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 377, 456
BfrI CTTAAG 1 cut(s) 148
BisI GCNGC 1 cut(s) 314
BlsI GCNGC 1 cut(s) 315
Bme1390I CCNGG 1 cut(s) 277
Bme18I GGWCC 2 cut(s) 272, 335
BmgT120I GGNCC 2 cut(s) 272, 335
BmiI GGNNCC 2 cut(s) 274, 337
BmrFI CCNGG 1 cut(s) 277
BpiI GAAGAC 2 cut(s) 200, 366
BsaI GGTCTC 1 cut(s) 377
BsaJI CCNNGG 3 cut(s) 36, 275, 276
Bse1I ACTGG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 3 cut(s) 36, 275, 276
BseNI ACTGG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 300
BshFI GGCC 2 cut(s) 105, 429
BsiHKAI GWGCWC 1 cut(s) 249
BslFI GGGAC 2 cut(s) 258, 413
BsmAI GTCTC 2 cut(s) 377, 456
BsmFI GGGAC 2 cut(s) 258, 413
BsnI GGCC 2 cut(s) 105, 429
Bso31I GGTCTC 1 cut(s) 377
Bsp1286I GDGCHC 1 cut(s) 249
BspANI GGCC 2 cut(s) 105, 429
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 2 cut(s) 274, 337
BspTI CTTAAG 1 cut(s) 148
BspTNI GGTCTC 1 cut(s) 377
BsrI ACTGG 1 cut(s) 261
BssECI CCNNGG 3 cut(s) 36, 275, 276
Bst2UI CCWGG 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 394
BstAFI CTTAAG 1 cut(s) 148
BstC8I GCNNGC 3 cut(s) 155, 159, 292
BstMAI GTCTC 2 cut(s) 377, 456
BstMWI GCNNNNNNNGC 1 cut(s) 300
BstNI CCWGG 1 cut(s) 277
BstNSI RCATGY 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 275
BstV1I GCAGC 1 cut(s) 300
BstV2I GAAGAC 2 cut(s) 200, 366
BsuRI GGCC 2 cut(s) 105, 429
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 88
Cac8I GCNNGC 3 cut(s) 155, 159, 292
CciI TCATGA 1 cut(s) 174
Cfr13I GGNCC 2 cut(s) 272, 335
Csp6I GTAC 2 cut(s) 254, 376
CviAII CATG 2 cut(s) 158, 175
CviQI GTAC 2 cut(s) 254, 376
Eco147I AGGCCT 1 cut(s) 429
Eco31I GGTCTC 1 cut(s) 377
Eco47I GGWCC 2 cut(s) 272, 335
EcoO109I RGGNCCY 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 275
FaeI CATG 2 cut(s) 161, 178
FaiI YATR 7 cut(s) 74, 95, 159, 176, 218, 267, 417
FaqI GGGAC 2 cut(s) 258, 413
FatI CATG 2 cut(s) 157, 174
Fnu4HI GCNGC 1 cut(s) 314
Fsp4HI GCNGC 1 cut(s) 314
GluI GCNGC 1 cut(s) 314
HaeIII GGCC 2 cut(s) 105, 429
Hin1II CATG 2 cut(s) 161, 178
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HindIII AAGCTT 2 cut(s) 292, 461
HinfI GANTC 1 cut(s) 231
HpaI GTTAAC 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 125, 138
Hpy188I TCNGA 2 cut(s) 37, 358
Hpy188III TCNNGA 2 cut(s) 175, 235
Hpy8I GTNNAC 2 cut(s) 125, 138
HpyAV CCTTC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 394
HpyCH4V TGCA 4 cut(s) 81, 161, 190, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 300
Hsp92II CATG 2 cut(s) 161, 178
KspAI GTTAAC 1 cut(s) 138
LpnPI CCDG 8 cut(s) 129, 144, 235, 242, 262, 289, 291, 364
Lsp1109I GCAGC 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 59
MboII GAAGA 2 cut(s) 200, 371
MhlI GDGCHC 1 cut(s) 249
MnlI CCTC 5 cut(s) 31, 79, 263, 378, 440
MseI TTAA 4 cut(s) 137, 149, 420, 459
MslI CAYNNNNRTG 1 cut(s) 66
MspCI CTTAAG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 277
MwoI GCNNNNNNNGC 1 cut(s) 300
NlaIII CATG 2 cut(s) 161, 178
NlaIV GGNNCC 2 cut(s) 274, 337
NmuCI GTSAC 1 cut(s) 59
NspI RCATGY 1 cut(s) 161
PaeI GCATGC 1 cut(s) 161
PagI TCATGA 1 cut(s) 174
PasI CCCWGGG 1 cut(s) 276
PceI AGGCCT 1 cut(s) 429
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 1 cut(s) 315
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 275
PspGI CCWGG 1 cut(s) 275
PspN4I GGNNCC 2 cut(s) 274, 337
PspPI GGNCC 2 cut(s) 272, 335
PspPPI RGGWCCY 1 cut(s) 272
RsaI GTAC 2 cut(s) 255, 377
RsaNI GTAC 2 cut(s) 254, 376
RseI CAYNNNNRTG 1 cut(s) 66
SaqAI TTAA 4 cut(s) 137, 149, 420, 459
SatI GCNGC 1 cut(s) 314
Sau96I GGNCC 2 cut(s) 272, 335
ScrFI CCNGG 1 cut(s) 277
SduI GDGCHC 1 cut(s) 249
SetI ASST 5 cut(s) 18, 274, 296, 330, 465
SinI GGWCC 2 cut(s) 272, 335
SmiMI CAYNNNNRTG 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
SphI GCATGC 1 cut(s) 161
SseBI AGGCCT 1 cut(s) 429
SspI AATATT 1 cut(s) 199
StuI AGGCCT 1 cut(s) 429
StyD4I CCNGG 1 cut(s) 275
TaaI ACNGT 1 cut(s) 394
TaqI TCGA 2 cut(s) 320, 432
TatI WGTACW 1 cut(s) 375
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 4 cut(s) 137, 149, 420, 459
Tru9I TTAA 4 cut(s) 137, 149, 420, 459
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 59
TspDTI ATGAA 2 cut(s) 17, 163
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 1 cut(s) 88
Vha464I CTTAAG 1 cut(s) 148
VpaK11BI GGWCC 2 cut(s) 272, 335
XceI RCATGY 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.