RchiOBHm_Chr4g0392091

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Forward (+)
7505404 .. 7507099
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36487

Sequence Viewer

Length: 603 bp
ATGAAGATCAACCTAACACTCGATCAAAGAGAAATCCTTGTTGAATACTCGAAGCAAGTAATGAAGTTGGGGAAGCTATTGTTTGAGTTGTTGTCTGAGGCTCTTGGGCTAAATCCAAGTCACTTGAATGACATAGATTGCAGTGAGGGGCTTCTGGTTTTAGGCCATTACTATCCTGCTTGTCCACAACCAGAATTAACAATAGGAGTAAGCAAGCATGCAGATAATTCCTTCATCACTGTCCTTCTGCAAGATAATATTGGTGGTCTTCAAGTCCTTCATCAGAACAACTGGATTGATGTACCCCCAATGCCGGGGGCTCTTGTGGTTAACATTGGAGATCTTTTGCAGCTCATATCAAATGACAGATTCAAGAGTTTCGAACACAGGGTACTGGCGAACCGTAGAGGTCCACGAGTATCGATTGCAAGCTTTTTCTCCACAGGATTGTTGCCATTACCAAGACTCTACGGACCAATCATGGAGTTATTATCAGAAAACAATCCTCCAAAGTACAGGGAGACTACTGTTAGGGACTATGTTGCCTACTTCCATAAGAAAGGCCTTGATGGCACCTCTGCTTTGTCTCACTTTAAGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

200

Amino Acids

22.42

Weight (kDa)

6.65

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 54 - 147 8.5e-35 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 572
AfaI GTAC 3 cut(s) 303, 393, 515
AfiI CCNNNNNNNGG 2 cut(s) 313, 314
AgsI TTSAA 4 cut(s) 44, 127, 272, 373
AluBI AGCT 3 cut(s) 76, 352, 432
AluI AGCT 3 cut(s) 76, 352, 432
Alw26I GTCTC 2 cut(s) 515, 591
AoxI GGCC 2 cut(s) 163, 562
ApeKI GCWGC 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 410, 473
AsuC2I CCSGG 1 cut(s) 315
AsuII TTCGAA 1 cut(s) 381
AvaII GGWCC 2 cut(s) 410, 473
BanI GGYRCC 1 cut(s) 572
BanII GRGCYC 1 cut(s) 322
BauI CACGAG 1 cut(s) 414
BbsI GAAGAC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 361
BccI CCATC 1 cut(s) 563
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 515, 591
BglI GCCNNNNNGGC 1 cut(s) 570
BglII AGATCT 1 cut(s) 340
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
Bme1390I CCNGG 1 cut(s) 315
Bme18I GGWCC 2 cut(s) 410, 473
BmgT120I GGNCC 2 cut(s) 410, 473
BmiI GGNNCC 1 cut(s) 574
BmrFI CCNGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 260
Bpu14I TTCGAA 1 cut(s) 381
BpuMI CCSGG 1 cut(s) 315
Bsa29I ATCGAT 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 314
Bsc4I CCNNNNNNNGG 2 cut(s) 313, 314
Bse1I ACTGG 2 cut(s) 296, 399
BseCI ATCGAT 1 cut(s) 422
BseDI CCNNGG 1 cut(s) 314
BseLI CCNNNNNNNGG 2 cut(s) 313, 314
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 296, 399
BseXI GCAGC 1 cut(s) 361
BshFI GGCC 2 cut(s) 165, 564
BshNI GGYRCC 1 cut(s) 572
BshVI ATCGAT 1 cut(s) 422
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 2 cut(s) 313, 314
BsmAI GTCTC 2 cut(s) 515, 591
BsmFI GGGAC 1 cut(s) 548
BsnI GGCC 2 cut(s) 165, 564
Bsp119I TTCGAA 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 3 cut(s) 6, 22, 340
BspANI GGCC 2 cut(s) 165, 564
BspCNI CTCAG 1 cut(s) 88
BspDI ATCGAT 1 cut(s) 422
BspLI GGNNCC 1 cut(s) 574
BspT104I TTCGAA 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 572
BsrI ACTGG 2 cut(s) 296, 399
BssECI CCNNGG 1 cut(s) 314
BssMI GATC 3 cut(s) 6, 22, 340
BssSI CACGAG 1 cut(s) 414
Bst2BI CACGAG 1 cut(s) 414
Bst4CI ACNGT 3 cut(s) 241, 404, 529
BstBI TTCGAA 1 cut(s) 381
BstC8I GCNNGC 3 cut(s) 215, 219, 430
BstDEI CTNAG 1 cut(s) 96
BstKTI GATC 3 cut(s) 9, 25, 343
BstMAI GTCTC 2 cut(s) 515, 591
BstMBI GATC 3 cut(s) 6, 22, 340
BstMWI GCNNNNNNNGC 1 cut(s) 570
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 313
BstV1I GCAGC 1 cut(s) 361
BstV2I GAAGAC 1 cut(s) 260
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
Bsu15I ATCGAT 1 cut(s) 422
BsuRI GGCC 2 cut(s) 165, 564
BsuTUI ATCGAT 1 cut(s) 422
BtsI GCAGTG 1 cut(s) 148
BtsIMutI CAGTG 2 cut(s) 148, 237
Cac8I GCNNGC 3 cut(s) 215, 219, 430
Cfr13I GGNCC 2 cut(s) 410, 473
ClaI ATCGAT 1 cut(s) 422
Csp6I GTAC 3 cut(s) 302, 392, 514
CviAII CATG 2 cut(s) 218, 481
CviJI RGCY 9 cut(s) 76, 101, 109, 151, 165, 320, 352, 432, 564
CviKI_1 RGCY 9 cut(s) 76, 101, 109, 151, 165, 320, 352, 432, 564
CviQI GTAC 3 cut(s) 302, 392, 514
DdeI CTNAG 1 cut(s) 96
DpnI GATC 3 cut(s) 8, 24, 342
DpnII GATC 3 cut(s) 6, 22, 340
Eco147I AGGCCT 1 cut(s) 564
Eco24I GRGCYC 1 cut(s) 322
Eco47I GGWCC 2 cut(s) 410, 473
EcoT38I GRGCYC 1 cut(s) 322
FaeI CATG 2 cut(s) 221, 484
FaiI YATR 6 cut(s) 134, 219, 356, 482, 540, 555
FaqI GGGAC 1 cut(s) 548
FatI CATG 2 cut(s) 217, 480
Fnu4HI GCNGC 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 322
Fsp4HI GCNGC 1 cut(s) 350
GluI GCNGC 1 cut(s) 350
HaeIII GGCC 2 cut(s) 165, 564
HapII CCGG 1 cut(s) 314
Hin1II CATG 2 cut(s) 221, 484
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 2 cut(s) 369, 465
HpaI GTTAAC 1 cut(s) 331
HpaII CCGG 1 cut(s) 314
Hpy166II GTNNAC 3 cut(s) 185, 331, 413
Hpy188I TCNGA 3 cut(s) 97, 285, 496
Hpy188III TCNNGA 1 cut(s) 373
Hpy8I GTNNAC 3 cut(s) 185, 331, 413
HpyAV CCTTC 3 cut(s) 241, 254, 287
HpyCH4III ACNGT 3 cut(s) 241, 404, 529
HpyCH4V TGCA 5 cut(s) 141, 221, 250, 349, 428
HpyF10VI GCNNNNNNNGC 1 cut(s) 570
HpyF3I CTNAG 1 cut(s) 96
Hsp92II CATG 2 cut(s) 221, 484
KspAI GTTAAC 1 cut(s) 331
Kzo9I GATC 3 cut(s) 6, 22, 340
LpnPI CCDG 9 cut(s) 140, 189, 204, 277, 327, 373, 380, 429, 502
Lsp1109I GCAGC 1 cut(s) 361
MaeIII GTNAC 1 cut(s) 119
MalI GATC 3 cut(s) 8, 24, 342
MboI GATC 3 cut(s) 6, 22, 340
MboII GAAGA 2 cut(s) 16, 260
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 2 cut(s) 194, 226
MlyI GAGTC 1 cut(s) 459
MnlI CCTC 5 cut(s) 91, 139, 401, 516, 586
MseI TTAA 3 cut(s) 197, 330, 594
MslI CAYNNNNRTG 1 cut(s) 126
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 1 cut(s) 315
MwoI GCNNNNNNNGC 1 cut(s) 570
NciI CCSGG 1 cut(s) 315
NdeII GATC 3 cut(s) 6, 22, 340
NlaIII CATG 2 cut(s) 221, 484
NlaIV GGNNCC 1 cut(s) 574
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 1 cut(s) 221
NspV TTCGAA 1 cut(s) 381
PaeI GCATGC 1 cut(s) 221
PceI AGGCCT 1 cut(s) 564
PfeI GAWTC 1 cut(s) 369
PkrI GCNGC 1 cut(s) 351
PleI GAGTC 1 cut(s) 459
PpsI GAGTC 1 cut(s) 459
PspN4I GGNNCC 1 cut(s) 574
PspPI GGNCC 2 cut(s) 410, 473
PsrI GAACNNNNNNTAC 2 cut(s) 375, 407
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 3 cut(s) 303, 393, 515
RsaNI GTAC 3 cut(s) 302, 392, 514
RseI CAYNNNNRTG 1 cut(s) 126
SaqAI TTAA 3 cut(s) 197, 330, 594
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 3 cut(s) 6, 22, 340
Sau96I GGNCC 2 cut(s) 410, 473
SchI GAGTC 1 cut(s) 459
ScrFI CCNGG 1 cut(s) 315
SduI GDGCHC 1 cut(s) 322
SetI ASST 7 cut(s) 15, 78, 354, 412, 434, 578, 600
SfuI TTCGAA 1 cut(s) 381
SinI GGWCC 2 cut(s) 410, 473
SmiMI CAYNNNNRTG 1 cut(s) 126
SphI GCATGC 1 cut(s) 221
Sse9I AATT 2 cut(s) 194, 226
SseBI AGGCCT 1 cut(s) 564
SspI AATATT 1 cut(s) 259
StuI AGGCCT 1 cut(s) 564
StyD4I CCNGG 1 cut(s) 313
TaaI ACNGT 3 cut(s) 241, 404, 529
TaqI TCGA 4 cut(s) 21, 50, 381, 422
TasI AATT 2 cut(s) 194, 226
TatI WGTACW 1 cut(s) 513
TfiI GAWTC 1 cut(s) 369
Tru1I TTAA 3 cut(s) 197, 330, 594
Tru9I TTAA 3 cut(s) 197, 330, 594
TscAI CASTG 2 cut(s) 148, 244
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 1 cut(s) 349
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 4 cut(s) 17, 77, 223, 269
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 2 cut(s) 148, 244
VpaK11BI GGWCC 2 cut(s) 410, 473
XceI RCATGY 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.