RLG00000006667

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
9511166 .. 9513911
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006667

Sequence Viewer

Length: 423 bp
ATGGAGGGGATCGCGGTGGTAGTGTGTGCAATGAGGAAGGGAGAGATCGCGACAACGATCTGGTTTCAGGTTGCCCACTGCTGGTCTGGTTGGCGGAGGGGACAGGGGTCGTGCGATCGGAGGTGGCTCAGGGGTGTCGTGGTAGTGGCGGCGTGGTCGGGCATTGGTTGGACGAACCCGATCTGGGTTGGTTTTCTTGGATCCGATATGGAGAAGGCTTTGTTTGGCTGGGCCGGTGATCCATGGCATGACGATGGCGGACGAATGATGAAGGCGATCTGGCGAAACCGATGGGGCTACGCAGGCGGCGGTCCGACCAAGGTGGCCAGGGTGGGGCTAGGTCAAACTTGGGGCAGCTTTGCTCGGGTTCCTGTCCGGAGTGGAATCATAGAGCTGCATTATGGGGCAAAGAAGGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.56

Weight (kDa)

10.11

Isoelectric Point (pI)

40.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 14, 50
AccIII TCCGGA 1 cut(s) 375
AciI CCGC 6 cut(s) 14, 94, 149, 258, 306, 309
AclWI GGATC 4 cut(s) 17, 195, 208, 233
AcoI YGGCCR 1 cut(s) 324
AfiI CCNNNNNNNGG 3 cut(s) 81, 184, 333
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 2 cut(s) 357, 394
AluI AGCT 2 cut(s) 357, 394
AlwI GGATC 4 cut(s) 17, 195, 208, 233
Ama87I CYCGRG 1 cut(s) 363
Aor13HI TCCGGA 1 cut(s) 375
AoxI GGCC 2 cut(s) 231, 324
ApeKI GCWGC 2 cut(s) 354, 394
AspS9I GGNCC 2 cut(s) 231, 311
AsuHPI GGTGA 1 cut(s) 248
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 1 cut(s) 311
BalI TGGCCA 1 cut(s) 326
BamHI GGATCC 1 cut(s) 200
BbvI GCAGC 2 cut(s) 366, 381
BccI CCATC 2 cut(s) 248, 285
BciT130I CCWGG 1 cut(s) 328
BfaI CTAG 1 cut(s) 338
BisI GCNGC 4 cut(s) 150, 307, 355, 395
BlsI GCNGC 4 cut(s) 151, 308, 356, 396
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 311
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 2 cut(s) 231, 311
BmiI GGNNCC 2 cut(s) 202, 369
BmrFI CCNGG 1 cut(s) 328
BoxI GACNNNNGTC 1 cut(s) 106
Bpu10I CCTNAGC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 242, 318, 327
BsaWI WCCGGW 1 cut(s) 375
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 184, 333
Bse118I RCCGGY 1 cut(s) 233
Bse3DI GCAATG 1 cut(s) 36
BseAI TCCGGA 1 cut(s) 375
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 3 cut(s) 242, 318, 327
BseLI CCNNNNNNNGG 3 cut(s) 81, 184, 333
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 142
BseXI GCAGC 2 cut(s) 366, 381
BseYI CCCAGC 1 cut(s) 228
Bsh1236I CGCG 2 cut(s) 14, 50
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 2 cut(s) 233, 326
BsiEI CGRYCG 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 2 cut(s) 234, 376
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 3 cut(s) 81, 184, 333
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 2 cut(s) 233, 326
BsoBI CYCGRG 1 cut(s) 363
Bsp13I TCCGGA 1 cut(s) 375
Bsp143I GATC 8 cut(s) 9, 45, 57, 115, 180, 200, 238, 276
Bsp19I CCATGG 1 cut(s) 242
Bsp68I TCGCGA 1 cut(s) 50
BspACI CCGC 6 cut(s) 14, 94, 149, 258, 306, 309
BspANI GGCC 2 cut(s) 233, 326
BspCNI CTCAG 1 cut(s) 141
BspEI TCCGGA 1 cut(s) 375
BspFNI CGCG 2 cut(s) 14, 50
BspLI GGNNCC 2 cut(s) 202, 369
BspPI GGATC 4 cut(s) 17, 195, 208, 233
BsrDI GCAATG 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 233
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 3 cut(s) 242, 318, 327
BssMI GATC 8 cut(s) 9, 45, 57, 115, 180, 200, 238, 276
BssT1I CCWWGG 2 cut(s) 242, 318
Bst2UI CCWGG 1 cut(s) 328
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 242
BstFNI CGCG 2 cut(s) 14, 50
BstKTI GATC 8 cut(s) 12, 48, 60, 118, 183, 203, 241, 279
BstMBI GATC 8 cut(s) 9, 45, 57, 115, 180, 200, 238, 276
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstNI CCWGG 1 cut(s) 328
BstPAI GACNNNNGTC 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 326
BstUI CGCG 2 cut(s) 14, 50
BstV1I GCAGC 2 cut(s) 366, 381
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BsuRI GGCC 2 cut(s) 233, 326
BtgI CCRYGG 1 cut(s) 242
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 1 cut(s) 76
BtuMI TCGCGA 1 cut(s) 50
Cac8I GCNNGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 233
Cfr13I GGNCC 2 cut(s) 231, 311
CpoI CGGWCCG 1 cut(s) 311
CspI CGGWCCG 1 cut(s) 311
CviAII CATG 2 cut(s) 243, 248
CviJI RGCY 9 cut(s) 127, 218, 228, 233, 297, 326, 337, 357, 394
CviKI_1 RGCY 9 cut(s) 127, 218, 228, 233, 297, 326, 337, 357, 394
DdeI CTNAG 1 cut(s) 128
DpnI GATC 8 cut(s) 11, 47, 59, 117, 182, 202, 240, 278
DpnII GATC 8 cut(s) 9, 45, 57, 115, 180, 200, 238, 276
EaeI YGGCCR 1 cut(s) 324
EciI GGCGGA 2 cut(s) 109, 273
Eco130I CCWWGG 2 cut(s) 242, 318
Eco47I GGWCC 1 cut(s) 311
Eco88I CYCGRG 1 cut(s) 363
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 242, 318
ErhI CCWWGG 2 cut(s) 242, 318
FaeI CATG 2 cut(s) 246, 251
FaiI YATR 5 cut(s) 209, 244, 249, 389, 402
FaqI GGGAC 1 cut(s) 114
FatI CATG 2 cut(s) 242, 247
Fnu4HI GCNGC 4 cut(s) 150, 307, 355, 395
Fsp4HI GCNGC 4 cut(s) 150, 307, 355, 395
FspBI CTAG 1 cut(s) 338
GluI GCNGC 4 cut(s) 150, 307, 355, 395
GsaI CCCAGC 1 cut(s) 232
HaeIII GGCC 2 cut(s) 233, 326
HapII CCGG 2 cut(s) 234, 376
Hin1II CATG 2 cut(s) 246, 251
HinfI GANTC 1 cut(s) 384
HpaII CCGG 2 cut(s) 234, 376
HphI GGTGA 1 cut(s) 248
Hpy188I TCNGA 3 cut(s) 120, 205, 315
Hpy188III TCNNGA 2 cut(s) 49, 376
HpyAV CCTTC 4 cut(s) 31, 208, 265, 406
HpyCH4V TGCA 2 cut(s) 29, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 2 cut(s) 246, 251
Kpn2I TCCGGA 1 cut(s) 375
Kzo9I GATC 8 cut(s) 9, 45, 57, 115, 180, 200, 238, 276
Lsp1109I GCAGC 2 cut(s) 366, 381
MaeI CTAG 1 cut(s) 338
MalI GATC 8 cut(s) 11, 47, 59, 117, 182, 202, 240, 278
MboI GATC 8 cut(s) 9, 45, 57, 115, 180, 200, 238, 276
MflI RGATCY 1 cut(s) 200
MlsI TGGCCA 1 cut(s) 326
MluNI TGGCCA 1 cut(s) 326
MmeI TCCRAC 2 cut(s) 149, 338
MnlI CCTC 3 cut(s) 27, 90, 114
Mox20I TGGCCA 1 cut(s) 326
MroI TCCGGA 1 cut(s) 375
MscI TGGCCA 1 cut(s) 326
MslI CAYNNNNRTG 1 cut(s) 252
Msp20I TGGCCA 1 cut(s) 326
MspI CCGG 2 cut(s) 234, 376
MspR9I CCNGG 1 cut(s) 328
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 2 cut(s) 14, 50
MwoI GCNNNNNNNGC 1 cut(s) 303
NcoI CCATGG 1 cut(s) 242
NdeII GATC 8 cut(s) 9, 45, 57, 115, 180, 200, 238, 276
NlaIII CATG 2 cut(s) 246, 251
NlaIV GGNNCC 2 cut(s) 202, 369
NruI TCGCGA 1 cut(s) 50
PfeI GAWTC 1 cut(s) 384
PkrI GCNGC 4 cut(s) 151, 308, 356, 396
Ple19I CGATCG 1 cut(s) 118
PshAI GACNNNNGTC 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 326
PspFI CCCAGC 1 cut(s) 228
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 2 cut(s) 202, 369
PspPI GGNCC 2 cut(s) 231, 311
PsuI RGATCY 1 cut(s) 200
PvuI CGATCG 1 cut(s) 118
RruI TCGCGA 1 cut(s) 50
RseI CAYNNNNRTG 1 cut(s) 252
Rsr2I CGGWCCG 1 cut(s) 311
RsrII CGGWCCG 1 cut(s) 311
SatI GCNGC 4 cut(s) 150, 307, 355, 395
Sau3AI GATC 8 cut(s) 9, 45, 57, 115, 180, 200, 238, 276
Sau96I GGNCC 2 cut(s) 231, 311
ScrFI CCNGG 1 cut(s) 328
SetI ASST 6 cut(s) 72, 125, 324, 343, 359, 396
SinI GGWCC 1 cut(s) 311
SmiMI CAYNNNNRTG 1 cut(s) 252
SsiI CCGC 6 cut(s) 14, 94, 149, 258, 306, 309
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 2 cut(s) 242, 318
TauI GCSGC 2 cut(s) 152, 309
TfiI GAWTC 1 cut(s) 384
TscAI CASTG 1 cut(s) 83
TseI GCWGC 2 cut(s) 354, 394
TspDTI ATGAA 1 cut(s) 284
TspRI CASTG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 311
XcmI CCANNNNNNNNNTGG 1 cut(s) 83
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.