Rh4AG040700

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000054
Physical Location & Seq
Forward (+)
8529966 .. 8532409
2444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG040700.1

Sequence Viewer

Length: 1098 bp
ATGGTCTCCGAGAATTCTAGCACCAACGAAGAGCGTCTTCAACAGCTGAAGGCTTTTGACCAATCCAAAGCTGGCGTCAAAGGGATCGTCGACGCCGGAGTCACCAAAATCCCATCGATTTTCTTTCACTCGGGTGACGACCACACAAGTTTCAGTTCCAGTCAACCAACTCAAACCCAGTTCAGGATCCCAGTTGTTGACCTAACTGACACTGAGCACACGCGCGCTGAAGTTGTCGACGGAGTACGGCGGGCCGCAGAGAGCGTAGGGTTCTTCCAGGTGGTGAACCATGGGATACCAAAGAGAGTTTTGGAGGAGATGCTGGAGGCAACACGCGCGTTCCACGAGCTTCCGAGTGAGATGAAGGCTGATTACTACACTAGGGACCCGATGAGGAAAGTCAGGTTCGTTAGCAGCTTTCATCTGTACGAGTCAAGGTCTGCTAATTGGAGGGACAGTCTGTTGTGTGACATGGCTCCCGAGCCTCTTGATCCTCTGGAATTGCCTGCGATTTGCAGGGATATAACTGTTGAATACTCTAACAAAATTTATAAATTGGGACTTACTCTGTTTGAGCTGTTATCTGAGGCTCTTGGACTCAAATCAAACCACCTTCTAGGTTTGGATTGTGCAAATGGATATATTATTCTTGGTCATTACTATCCACCATGTCCTGAACCAGAATTGACCATTGGAACGGACAAACACTCGGATGCTAATTTTCTCACTATCCTACTTCAAGACAATATTGGTGGACTCCAAATTTTGCATGAAAATCAATGGATAGATGTTGCTCCCGTGGATGGATCTCTAATAGTCAACATTGGAGATCTTTTGCAGCTAATCTCAAACGACAAGTTTGTAAGTGTTAATCACAGAGCAGTGACGAAAACCGTAGGTCCAAGAATTTCAGTAGCATGTTTTCTCAGGCACATGTCACTCGAAAGTTTACCAAGACTATATGAGCCAATTAAGGAGTTGACGTCAGAAGAAAATCCTGCTAAGTACCGGGCAACCAGTGTGAAAGAGTATGTTGGATACCACTATAATAAAGGTATGATTGCTGGAGTCTCCGGACTAGAATATTTGAAGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

365

Amino Acids

40.91

Weight (kDa)

5.56

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 63 - 159 4.6e-19 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 216 - 310 1.8e-31 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 552
AasI GACNNNNNNGTC 1 cut(s) 98
AatII GACGTC 1 cut(s) 986
AccI GTMKAC 2 cut(s) 90, 237
AccII CGCG 4 cut(s) 223, 225, 336, 338
AccIII TCCGGA 1 cut(s) 1073
AciI CCGC 2 cut(s) 250, 255
AclWI GGATC 5 cut(s) 92, 181, 194, 485, 814
AcsI RAATTY 4 cut(s) 13, 546, 762, 906
AcuI CTGAAG 2 cut(s) 68, 249
AcyI GRCGYC 3 cut(s) 75, 93, 983
AfaI GTAC 3 cut(s) 246, 428, 1007
AfiI CCNNNNNNNGG 2 cut(s) 183, 803
AflIII ACRYGT 1 cut(s) 933
AgsI TTSAA 4 cut(s) 41, 533, 740, 1090
AjnI CCWGG 1 cut(s) 276
AjuI GAANNNNNNNTTGG 2 cut(s) 675, 707
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 6 cut(s) 46, 71, 349, 417, 577, 841
AluI AGCT 6 cut(s) 46, 71, 349, 417, 577, 841
Alw21I GWGCWC 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 10, 1075
AlwI GGATC 5 cut(s) 92, 181, 194, 485, 814
Ama87I CYCGRG 2 cut(s) 130, 479
Aor13HI TCCGGA 1 cut(s) 1073
AoxI GGCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 414, 838
ApoI RAATTY 4 cut(s) 13, 546, 762, 906
ArsI GACNNNNNNTTYG 4 cut(s) 60, 72, 92, 104
AspLEI GCGC 3 cut(s) 225, 227, 338
AspS9I GGNCC 3 cut(s) 252, 385, 899
AsuC2I CCSGG 1 cut(s) 1010
AsuHPI GGTGA 3 cut(s) 94, 146, 295
AvaI CYCGRG 2 cut(s) 130, 479
AvaII GGWCC 2 cut(s) 385, 899
BamHI GGATCC 1 cut(s) 186
BarI GAAGNNNNNNTAC 2 cut(s) 356, 388
BauI CACGAG 1 cut(s) 344
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 2 cut(s) 426, 850
BccI CCATC 2 cut(s) 121, 797
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 278
BciVI GTATCC 2 cut(s) 288, 1031
BcnI CCSGG 1 cut(s) 1010
BcoDI GTCTC 2 cut(s) 10, 1075
BfaI CTAG 4 cut(s) 18, 381, 617, 1079
BfuI GTATCC 2 cut(s) 288, 1031
BglII AGATCT 1 cut(s) 829
BisI GCNGC 3 cut(s) 255, 415, 839
BlsI GCNGC 3 cut(s) 256, 416, 840
Bme1390I CCNGG 2 cut(s) 278, 1010
Bme18I GGWCC 2 cut(s) 385, 899
BmeT110I CYCGRG 2 cut(s) 130, 479
BmgT120I GGNCC 3 cut(s) 252, 385, 899
BmiI GGNNCC 4 cut(s) 188, 386, 387, 477
BmrFI CCNGG 2 cut(s) 278, 1010
BmrI ACTGGG 2 cut(s) 172, 185
BmsI GCATC 2 cut(s) 309, 703
BmuI ACTGGG 2 cut(s) 172, 185
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 2 cut(s) 344, 1086
BpuMI CCSGG 1 cut(s) 1010
Bsa29I ATCGAT 1 cut(s) 116
BsaHI GRCGYC 3 cut(s) 75, 93, 983
BsaI GGTCTC 1 cut(s) 10
BsaJI CCNNGG 2 cut(s) 289, 798
BsaWI WCCGGW 1 cut(s) 1073
BsaXI ACNNNNNCTCC 4 cut(s) 442, 472, 968, 998
Bsc4I CCNNNNNNNGG 2 cut(s) 183, 803
Bse1I ACTGG 4 cut(s) 159, 178, 191, 1017
BseAI TCCGGA 1 cut(s) 1073
BseBI CCWGG 1 cut(s) 278
BseCI ATCGAT 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 289, 798
BseGI GGATG 2 cut(s) 718, 808
BseLI CCNNNNNNNGG 2 cut(s) 183, 803
BseMII CTCAG 3 cut(s) 204, 576, 940
BseNI ACTGG 4 cut(s) 159, 178, 191, 1017
BsePI GCGCGC 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 329
BseXI GCAGC 2 cut(s) 426, 850
Bsh1236I CGCG 4 cut(s) 223, 225, 336, 338
BshFI GGCC 1 cut(s) 254
BshVI ATCGAT 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 219
BsiHKCI CYCGRG 2 cut(s) 130, 479
BsiSI CCGG 3 cut(s) 96, 1009, 1074
BslFI GGGAC 3 cut(s) 398, 467, 573
BslI CCNNNNNNNGG 2 cut(s) 183, 803
BsmAI GTCTC 2 cut(s) 10, 1075
BsmFI GGGAC 3 cut(s) 398, 467, 573
BsnI GGCC 1 cut(s) 254
Bso31I GGTCTC 1 cut(s) 10
BsoBI CYCGRG 2 cut(s) 130, 479
Bsp1286I GDGCHC 1 cut(s) 219
Bsp13I TCCGGA 1 cut(s) 1073
Bsp143I GATC 5 cut(s) 84, 186, 490, 806, 829
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 2 cut(s) 250, 255
BspANI GGCC 1 cut(s) 254
BspCNI CTCAG 3 cut(s) 205, 577, 939
BspDI ATCGAT 1 cut(s) 116
BspEI TCCGGA 1 cut(s) 1073
BspFNI CGCG 4 cut(s) 223, 225, 336, 338
BspLI GGNNCC 4 cut(s) 188, 386, 387, 477
BspPI GGATC 5 cut(s) 92, 181, 194, 485, 814
BspQI GCTCTTC 1 cut(s) 24
BspTNI GGTCTC 1 cut(s) 10
BsrI ACTGG 4 cut(s) 159, 178, 191, 1017
BssECI CCNNGG 2 cut(s) 289, 798
BssHII GCGCGC 1 cut(s) 223
BssMI GATC 5 cut(s) 84, 186, 490, 806, 829
BssNI GRCGYC 3 cut(s) 75, 93, 983
BssSI CACGAG 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 289
Bst2BI CACGAG 1 cut(s) 344
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 3 cut(s) 458, 529, 895
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 3 cut(s) 75, 93, 983
BstC8I GCNNGC 4 cut(s) 73, 225, 252, 507
BstDEI CTNAG 4 cut(s) 213, 585, 926, 1002
BstDSI CCRYGG 2 cut(s) 289, 798
BstF5I GGATG 2 cut(s) 718, 808
BstFNI CGCG 4 cut(s) 223, 225, 336, 338
BstHHI GCGC 3 cut(s) 225, 227, 338
BstKTI GATC 5 cut(s) 87, 189, 493, 809, 832
BstMAI GTCTC 2 cut(s) 10, 1075
BstMBI GATC 5 cut(s) 84, 186, 490, 806, 829
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 2 cut(s) 921, 937
BstSCI CCNGG 2 cut(s) 276, 1008
BstUI CGCG 4 cut(s) 223, 225, 336, 338
BstV1I GCAGC 2 cut(s) 426, 850
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 3 cut(s) 186, 806, 829
BstYI RGATCY 3 cut(s) 186, 806, 829
Bsu15I ATCGAT 1 cut(s) 116
BsuI GTATCC 2 cut(s) 288, 1031
BsuRI GGCC 1 cut(s) 254
BsuTUI ATCGAT 1 cut(s) 116
BtgI CCRYGG 2 cut(s) 289, 798
BtsCI GGATG 2 cut(s) 718, 808
BtsI GCAGTG 1 cut(s) 888
BtsIMutI CAGTG 3 cut(s) 210, 888, 1024
Cac8I GCNNGC 4 cut(s) 73, 225, 252, 507
CfoI GCGC 3 cut(s) 225, 227, 338
Cfr13I GGNCC 3 cut(s) 252, 385, 899
ClaI ATCGAT 1 cut(s) 116
CseI GACGC 3 cut(s) 23, 64, 101
Csp6I GTAC 3 cut(s) 245, 427, 1006
CspCI CAANNNNNGTGG 2 cut(s) 733, 768
CviAII CATG 6 cut(s) 290, 472, 669, 770, 918, 934
CviQI GTAC 3 cut(s) 245, 427, 1006
DdeI CTNAG 4 cut(s) 213, 585, 926, 1002
DpnI GATC 5 cut(s) 86, 188, 492, 808, 831
DpnII GATC 5 cut(s) 84, 186, 490, 806, 829
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 289
Eco31I GGTCTC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 385, 899
Eco57I CTGAAG 2 cut(s) 68, 249
Eco88I CYCGRG 2 cut(s) 130, 479
EcoO109I RGGNCCY 1 cut(s) 385
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 6 cut(s) 293, 475, 672, 773, 921, 937
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 3 cut(s) 398, 467, 573
FatI CATG 6 cut(s) 289, 471, 668, 769, 917, 933
FauI CCCGC 1 cut(s) 243
FblI GTMKAC 2 cut(s) 90, 237
Fnu4HI GCNGC 3 cut(s) 255, 415, 839
FokI GGATG 2 cut(s) 725, 815
Fsp4HI GCNGC 3 cut(s) 255, 415, 839
FspBI CTAG 4 cut(s) 18, 381, 617, 1079
GlaI GCGC 3 cut(s) 224, 226, 337
GluI GCNGC 3 cut(s) 255, 415, 839
GsuI CTGGAG 2 cut(s) 344, 1086
HaeIII GGCC 1 cut(s) 254
HapII CCGG 3 cut(s) 96, 1009, 1074
HgaI GACGC 3 cut(s) 23, 64, 101
HhaI GCGC 3 cut(s) 225, 227, 338
Hin1I GRCGYC 3 cut(s) 75, 93, 983
Hin1II CATG 6 cut(s) 293, 475, 672, 773, 921, 937
Hin6I GCGC 3 cut(s) 223, 225, 336
HinP1I GCGC 3 cut(s) 223, 225, 336
HincII GTYRAC 6 cut(s) 91, 164, 199, 238, 820, 981
HindII GTYRAC 6 cut(s) 91, 164, 199, 238, 820, 981
HinfI GANTC 5 cut(s) 99, 431, 597, 756, 1068
HpaII CCGG 3 cut(s) 96, 1009, 1074
HphI GGTGA 3 cut(s) 94, 146, 295
Hpy166II GTNNAC 9 cut(s) 91, 164, 199, 238, 286, 755, 820, 950, 981
Hpy188I TCNGA 5 cut(s) 10, 354, 586, 712, 988
Hpy188III TCNNGA 7 cut(s) 184, 479, 488, 497, 674, 740, 1074
Hpy8I GTNNAC 9 cut(s) 91, 164, 199, 238, 286, 755, 820, 950, 981
Hpy99I CGWCG 3 cut(s) 92, 95, 242
HpyAV CCTTC 3 cut(s) 43, 358, 623
HpyCH4III ACNGT 3 cut(s) 458, 529, 895
HpyCH4IV ACGT 1 cut(s) 983
HpyCH4V TGCA 4 cut(s) 516, 632, 769, 838
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 4 cut(s) 213, 585, 926, 1002
HpySE526I ACGT 1 cut(s) 983
Hsp92I GRCGYC 3 cut(s) 75, 93, 983
Hsp92II CATG 6 cut(s) 293, 475, 672, 773, 921, 937
HspAI GCGC 3 cut(s) 223, 225, 336
KflI GGGWCCC 1 cut(s) 385
Kpn2I TCCGGA 1 cut(s) 1073
Kzo9I GATC 5 cut(s) 84, 186, 490, 806, 829
LguI GCTCTTC 1 cut(s) 24
LmnI GCTCC 2 cut(s) 481, 799
Lsp1109I GCAGC 2 cut(s) 426, 850
LweI GCATC 2 cut(s) 309, 703
MaeI CTAG 4 cut(s) 18, 381, 617, 1079
MaeII ACGT 1 cut(s) 983
MaeIII GTNAC 5 cut(s) 100, 134, 467, 883, 936
MalI GATC 5 cut(s) 86, 188, 492, 808, 831
MboI GATC 5 cut(s) 84, 186, 490, 806, 829
MboII GAAGA 4 cut(s) 29, 41, 265, 1001
MflI RGATCY 3 cut(s) 186, 806, 829
MhlI GDGCHC 1 cut(s) 219
MlyI GAGTC 5 cut(s) 108, 440, 591, 750, 1077
MmeI TCCRAC 1 cut(s) 1015
MnlI CCTC 7 cut(s) 307, 319, 387, 444, 495, 504, 580
MroI TCCGGA 1 cut(s) 1073
MseI TTAA 2 cut(s) 870, 972
MslI CAYNNNNRTG 2 cut(s) 132, 711
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 3 cut(s) 96, 1009, 1074
MspR9I CCNGG 2 cut(s) 278, 1010
MvaI CCWGG 1 cut(s) 278
MvnI CGCG 4 cut(s) 223, 225, 336, 338
MwoI GCNNNNNNNGC 1 cut(s) 335
NciI CCSGG 1 cut(s) 1010
NcoI CCATGG 1 cut(s) 289
NdeII GATC 5 cut(s) 84, 186, 490, 806, 829
NlaIII CATG 6 cut(s) 293, 475, 672, 773, 921, 937
NlaIV GGNNCC 4 cut(s) 188, 386, 387, 477
NmuCI GTSAC 5 cut(s) 100, 134, 467, 883, 936
NspI RCATGY 2 cut(s) 921, 937
OliI CACNNNNGTG 1 cut(s) 132
PauI GCGCGC 1 cut(s) 223
PciI ACATGT 1 cut(s) 933
PciSI GCTCTTC 1 cut(s) 24
PkrI GCNGC 3 cut(s) 256, 416, 840
PleI GAGTC 5 cut(s) 107, 439, 591, 750, 1076
PpsI GAGTC 5 cut(s) 107, 439, 591, 750, 1076
PpuMI RGGWCCY 1 cut(s) 385
PscI ACATGT 1 cut(s) 933
PsiI TTATAA 1 cut(s) 552
Psp5II RGGWCCY 1 cut(s) 385
Psp6I CCWGG 1 cut(s) 276
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 4 cut(s) 188, 386, 387, 477
PspPI GGNCC 3 cut(s) 252, 385, 899
PspPPI RGGWCCY 1 cut(s) 385
PsuI RGATCY 3 cut(s) 186, 806, 829
PteI GCGCGC 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 46
RsaI GTAC 3 cut(s) 246, 428, 1007
RsaNI GTAC 3 cut(s) 245, 427, 1006
RseI CAYNNNNRTG 2 cut(s) 132, 711
SalI GTCGAC 2 cut(s) 89, 236
SapI GCTCTTC 1 cut(s) 24
SaqAI TTAA 2 cut(s) 870, 972
SatI GCNGC 3 cut(s) 255, 415, 839
Sau3AI GATC 5 cut(s) 84, 186, 490, 806, 829
Sau96I GGNCC 3 cut(s) 252, 385, 899
SchI GAGTC 5 cut(s) 108, 440, 591, 750, 1077
ScrFI CCNGG 2 cut(s) 278, 1010
SduI GDGCHC 1 cut(s) 219
SfaNI GCATC 2 cut(s) 309, 703
SgrDI CGTCGACG 1 cut(s) 89
SinI GGWCC 2 cut(s) 385, 899
SmiMI CAYNNNNRTG 2 cut(s) 132, 711
SsiI CCGC 2 cut(s) 250, 255
SspI AATATT 2 cut(s) 748, 1085
SspMI CTAG 4 cut(s) 18, 381, 617, 1079
StyD4I CCNGG 2 cut(s) 276, 1008
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 458, 529, 895
TaiI ACGT 1 cut(s) 986
TaqI TCGA 4 cut(s) 90, 116, 237, 942
TauI GCSGC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 870, 972
Tru9I TTAA 2 cut(s) 870, 972
TscAI CASTG 3 cut(s) 217, 888, 1024
TseFI GTSAC 5 cut(s) 100, 134, 467, 883, 936
TseI GCWGC 2 cut(s) 414, 838
Tsp45I GTSAC 5 cut(s) 100, 134, 467, 883, 936
TspDTI ATGAA 3 cut(s) 377, 410, 786
TspGWI ACGGA 2 cut(s) 255, 713
TspRI CASTG 3 cut(s) 217, 888, 1024
VpaK11BI GGWCC 2 cut(s) 385, 899
XapI RAATTY 4 cut(s) 13, 546, 762, 906
XceI RCATGY 2 cut(s) 921, 937
XcmI CCANNNNNNNNNTGG 1 cut(s) 68
XmiI GTMKAC 2 cut(s) 90, 237
XspI CTAG 4 cut(s) 18, 381, 617, 1079
ZraI GACGTC 1 cut(s) 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.