Rroxscaffold_5G00337260

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000054
Physical Location & Seq
Forward (+)
5348258 .. 5351043
2786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00337260.1

Sequence Viewer

Length: 1155 bp
ATGAAATTGGCCGTGGATATCGCCGCAGACCGTGACAGACACTTGACCGTACGCACATTCCACTCCTCGACGAGGATCGTCCTCGCTTGCTCGCACAACATCTTCACCTCCGCCTCCGTCGAGGCTTGCATTGCATCGGGTGGTCGATCCGACGGTGTCAAAGGCCTTGTTGATGCTGGCATCGCCGAGATTCCTCGGATCTTTTATCATCCACCTGATGAGTACTCCATTAACAATACCTCTGATTCAGAAGAAGCCCAGTTTAGTATTCCAGTCATAGACCTCAAGGGCCTCTCAGATCCAACTAAACGAAAGGAGATCGTTGCAGACGTTGCAGAAGCATCGGAGTCATGGGGCTTTTTTCAAATTGTCAATCATGGAATACCTGTTGATGTGCTTGAGGAGATTAAGGATGGGGTACGTGGGTTCTTTGAGCAGGATACTGAAGTGAAGAAACAGTTTTATATTCGTGATAACTACAGTAGCCCATTCGTCTACAATAGCAACTTTGATCTGTATAGTGCACCAGTGACTAATTGGAGGGATACTTTTAGATGTAACATGACTCCTACTCCTAAGACAGAGGACTTGCCAGATGTATGCAGAGAGATACTTGTTGAATACTCAAAAACACTAATGAAGTTGGGGAAGCTATTGTTTGAGTTGTTGTCTGAGGCTCTTGGGCTAGAGCTAAGTCACTTGAATGACATAGATTGTAACAAGGGGCTTCTGGTTATAGGCCATTACTATCCTGCTTGTCCACAACCAGAATTAACAATAGGAACAAGCAAGCATGCAGATAATTCCTTCATCACTGTCCTTCTGCAATATAATATTGGTGGTCTTCAAGTCCTTCAACATAACATGTGGATTGATGTACCCCCTGTACCGGGTGCCCTAGTGCTTATATCCAATGACAAATTCAAGAGTGTAGAACACAGGGTACTGGCAAACCATAGAGGTCCCAGAATATCGGTTGCGGGTTTTTTCAGCACAGGACTGCTGCCATTGACAAAGCTCTACGGACCAATTAAGGAGTTATTATCAGAAGACAATCCTCCAAAGTACAGGGAGACCACTTTAAGGGACTATCATGCATACTACAGAGAAAAAGGCCTTGATGGGAGCTCTGCCTTGTCTTATTATAAGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
2OG-FeII_Oxy DIOX_N

Protein Analysis

384

Amino Acids

43.02

Weight (kDa)

5.58

Isoelectric Point (pI)

37.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 90 - 191 2e-21 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 245 - 331 2.2e-23 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000054)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03400 AT1G03400 AT1G03410 AT1G03410 AT1G04350 AT1G06620 AT1G06620 AT1G06640 AT1G06640 AT1G06640 AT1G06645 AT1G06650 AT1G06650 AT2G25450 AT2G30830 AT2G30840 AT2G30840 AT2G30840 AT3G61400 AT3G61400 AT5G43440 AT5G43440 AT5G43450 AT5G43450 AT5G59530 AT5G59540 AT5G59540
fragaria_vesca FvH4_2g03190 FvH4_2g03220 FvH4_3g07861 FvH4_3g31880 FvH4_3g31880 FvH4_3g31880 FvH4_4g03241 FvH4_4g03250 FvH4_4g03251 FvH4_4g03260 FvH4_4g03300 FvH4_4g03301 FvH4_4g03301 FvH4_4g03301 FvH4_4g03302 FvH4_4g03303 FvH4_4g03303 FvH4_4g03304 FvH4_4g03305 FvH4_4g03323 FvH4_4g03323 FvH4_5g19290 FvH4_5g19290 FvH4_5g19290 FvH4_5g19291 FvH4_5g19291 FvH4_5g19310 FvH4_5g19310 FvH4_5g19310 FvH4_5g19320 FvH4_5g19321 FvH4_5g19321 FvH4_5g19321 FvH4_7g31470
malus_domestica MD00G1220300.v1.1 MD02G1050800.v1.1 MD02G1053200.v1.1 MD02G1053300.v1.1 MD02G1054900.v1.1 MD03G1032300.v1.1 MD03G1245000.v1.1 MD03G1245300.v1.1 MD05G1014200.v1.1 MD13G1210900.v1.1 MD13G1211000.v1.1 MD13G1211100.v1.1 MD13G1211200.v1.1 MD13G1211800.v1.1 MD13G1211900.v1.1 MD13G1212000.v1.1 MD16G1214100.v1.1 MD16G1214300.v1.1 MD16G1214400.v1.1 MD16G1214600.v1.1 MD16G1215000.v1.1 MD16G1215200.v1.1 MD16G1215300.v1.1 MD16G1215500.v1.1 MD16G1271000.v1.1
prunus_persica Prupe.1G035500_v2.0.a1 Prupe.1G035700_v2.0.a1 Prupe.1G035800_v2.0.a1 Prupe.1G035900_v2.0.a1 Prupe.1G036000_v2.0.a1 Prupe.1G036100_v2.0.a1 Prupe.1G036200_v2.0.a1 Prupe.1G036400_v2.0.a1 Prupe.1G036500_v2.0.a1 Prupe.1G036600_v2.0.a1 Prupe.1G036700_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036800_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G036900_v2.0.a1 Prupe.1G191000_v2.0.a1 Prupe.1G191100_v2.0.a1
pyrus_communis pycom13g18340 pycom13g18350 pycom13g18380 pycom16g17990 pycom16g18010 pycom16g18020
rosa_chinensis RchiOBHm_Chr2g0124051 RchiOBHm_Chr4g0391811 RchiOBHm_Chr4g0391931 RchiOBHm_Chr4g0391961 RchiOBHm_Chr4g0391971 RchiOBHm_Chr4g0391981 RchiOBHm_Chr4g0391991 RchiOBHm_Chr4g0392031 RchiOBHm_Chr4g0392051 RchiOBHm_Chr4g0392061 RchiOBHm_Chr4g0392071 RchiOBHm_Chr4g0392081 RchiOBHm_Chr4g0392091 RchiOBHm_Chr4g0392111 RchiOBHm_Chr4g0392121 RchiOBHm_Chr4g0392131 RchiOBHm_Chr4g0392141 RchiOBHm_Chr4g0392151 RchiOBHm_Chr4g0392211 RchiOBHm_Chr4g0392251 RchiOBHm_Chr4g0392261 RchiOBHm_Chr4g0392301 RchiOBHm_Chr4g0392311 RchiOBHm_Chr4g0392341 RchiOBHm_Chr4g0409221 RchiOBHm_Chr4g0410991 RchiOBHm_Chr4g0429131 RchiOBHm_Chr4g0437051 RchiOBHm_Chr5g0038681 RchiOBHm_Chr5g0047071 RchiOBHm_Chr5g0058651 RchiOBHm_Chr6g0248121 RchiOBHm_Chr6g0248141 RchiOBHm_Chr6g0248291 RchiOBHm_Chr6g0248341 RchiOBHm_Chr6g0248351
rosa_laevigata RLG00000006473 RLG00000006475 RLG00000006667 RLG00000007095 RLG00000009819 RLG00000009820 RLG00000009821 RLG00000009822 RLG00000009825 RLG00000009826 RLG00000009830 RLG00000009831 RLG00000009832 RLG00000009833 RLG00000009834 RLG00000009835 RLG00000009837 RLG00000009838 RLG00000009839 RLG00000009841 RLG00000009842 RLG00000009844 RLG00000009845 RLG00000009846 RLG00000009847 RLG00000009848 RLG00000009849 RLG00000015160 RLG00000015161 RLG00000017791 RLG00000018779 RLG00000034461 RLG00000035237
rosa_multiflora Rmu_co8253791.1_g000001 Rmu_co8348827.1_g000001 Rmu_co8400489.1_g000001 Rmu_sc0000383.1_g000003 Rmu_sc0000383.1_g000005 Rmu_sc0000383.1_g000026 Rmu_sc0000846.1_g000012 Rmu_sc0001231.1_g000013 Rmu_sc0001231.1_g000026 Rmu_sc0001231.1_g000028 Rmu_sc0001800.1_g000027 Rmu_sc0003436.1_g000022 Rmu_sc0004104.1_g000004 Rmu_sc0004295.1_g000021 Rmu_sc0004295.1_g000031 Rmu_sc0004928.1_g000002 Rmu_sc0004928.1_g000008 Rmu_sc0004928.1_g000011 Rmu_sc0004928.1_g000027 Rmu_sc0004977.1_g000007 Rmu_sc0005018.1_g000002 Rmu_sc0005091.1_g000026 Rmu_sc0005091.1_g000032 Rmu_sc0005091.1_g000033 Rmu_sc0005817.1_g000003 Rmu_sc0005817.1_g000008 Rmu_sc0012482.1_g000002 Rmu_sc0014210.1_g000001 Rmu_sc0016150.1_g000001 Rmu_sc0029701.1_g000002 Rmu_sc0036585.1_g000001 Rmu_sc0037489.1_g000002
rosa_roxburghii Rroxscaffold_1G00021790 Rroxscaffold_1G00021800 Rroxscaffold_1G00034360 Rroxscaffold_2G00120130 Rroxscaffold_5G00337210 Rroxscaffold_5G00337220 Rroxscaffold_5G00337230 Rroxscaffold_5G00337250 Rroxscaffold_5G00337260 Rroxscaffold_5G00337270 Rroxscaffold_5G00337300 Rroxscaffold_5G00337310 Rroxscaffold_5G00337320 Rroxscaffold_5G00337330 Rroxscaffold_5G00337350 Rroxscaffold_5G00337370 Rroxscaffold_5G00337390 Rroxscaffold_5G00337400 Rroxscaffold_5G00337420 Rroxscaffold_5G00337430 Rroxscaffold_5G00337450 Rroxscaffold_5G00337470 Rroxscaffold_5G00337480 Rroxscaffold_5G00337520 Rroxscaffold_5G00378130 Rroxscaffold_6G00397800 Rroxscaffold_7G00213320 Rroxscaffold_7G00213390 Rroxscaffold_7G00213420 Rroxscaffold_7G00213470
rosa_rugosa Rorug02G0070100 Rorug02G0070100 Rorug02G0070100 Rorug02G0128600 Rorug02G0128700 Rorug02G0128800 Rorug02G0128900 Rorug02G0248400 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337000 Rorug03G0337100 Rorug03G0337200 Rorug03G0337300 Rorug03G0337600 Rorug03G0337700 Rorug03G0337800 Rorug03G0337900 Rorug03G0337900 Rorug03G0338000 Rorug03G0338100 Rorug03G0338200 Rorug04G0233200.1 Rorug04G0297900 Rorug05G0233700 Rorug05G0316700 Rorug05G0530800 Rorug05G0530900
rosa_samantha Rh2AG307400 Rh2BG316500 Rh2DG331200 Rh4AG039300 Rh4AG039400 Rh4AG039600 Rh4AG039700 Rh4AG039900 Rh4AG040000 Rh4AG040100 Rh4AG040300 Rh4AG040500 Rh4AG040700 Rh4AG041000 Rh4AG041100 Rh4AG041600 Rh4AG041800 Rh4AG041900 Rh4AG352400 Rh4BG033200 Rh4BG034100 Rh4BG034300 Rh4BG034700 Rh4BG034800 Rh4BG035200 Rh4BG035400 Rh4BG036000 Rh4BG036200 Rh4BG036300 Rh4BG036500 Rh4BG036800 Rh4BG361700 Rh4CG042000 Rh4CG042200 Rh4CG042300 Rh4CG042500 Rh4CG042600 Rh4CG042800 Rh4CG043200 Rh4CG043400 Rh4CG043500 Rh4CG043700 Rh4CG043800 Rh4CG044200 Rh4CG044500 Rh4CG044700 Rh4CG177000 Rh4CG310600 Rh4CG376000 Rh4DG036300 Rh4DG036900 Rh4DG037000 Rh4DG037100 Rh4DG037200 Rh4DG037300 Rh4DG037500 Rh4DG037700 Rh4DG037800 Rh4DG037900 Rh4DG038000 Rh4DG038200 Rh4DG038500 Rh4DG038700 Rh4DG038900 Rh4DG159600 Rh5CG347900 Rh5DG409900 Rh6AG045300 Rh6AG045800 Rh6AG046000 Rh6AG046100 Rh6BG040600 Rh6BG040700 Rh6BG042200 Rh6BG042700 Rh6BG042800 Rh6DG035900 Rh6DG036100 Rh6DG036200
rosa_wichuraiana Rw0G010420 Rw2G024780 Rw4G003020 Rw4G003070 Rw4G003080 Rw4G003090 Rw4G003100 Rw4G003130 Rw4G003140 Rw4G003150 Rw4G003180 Rw4G003190 Rw4G003200 Rw4G003210 Rw4G003220 Rw4G003240 Rw4G003270 Rw4G025050 Rw4G030850 Rw6G003930 Rw6G004000 Rw6G004030 Rw6G004040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1146
AccB1I GGYRCC 1 cut(s) 893
AccI GTMKAC 1 cut(s) 495
AciI CCGC 3 cut(s) 24, 111, 980
AclWI GGATC 4 cut(s) 83, 141, 206, 293
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 1 cut(s) 920
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 7 cut(s) 51, 224, 420, 879, 888, 945, 1067
AfiI CCNNNNNNNGG 4 cut(s) 72, 889, 890, 1083
AflIII ACRYGT 1 cut(s) 864
AgsI TTSAA 6 cut(s) 365, 620, 703, 848, 857, 925
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AluBI AGCT 5 cut(s) 652, 691, 1018, 1128, 1150
AluI AGCT 5 cut(s) 652, 691, 1018, 1128, 1150
Alw21I GWGCWC 2 cut(s) 526, 1130
Alw26I GTCTC 1 cut(s) 1067
Alw44I GTGCAC 1 cut(s) 522
AlwI GGATC 4 cut(s) 83, 141, 206, 293
AoxI GGCC 5 cut(s) 9, 163, 289, 739, 1114
ApaLI GTGCAC 1 cut(s) 522
ApeKI GCWGC 1 cut(s) 1003
ApoI RAATTY 1 cut(s) 920
AspS9I GGNCC 3 cut(s) 289, 962, 1025
AsuC2I CCSGG 1 cut(s) 891
AsuHPI GGTGA 1 cut(s) 97
AvaII GGWCC 2 cut(s) 962, 1025
BaeGI GKGCMC 2 cut(s) 526, 898
BaeI ACNNNNGTAYC 4 cut(s) 410, 432, 443, 465
BanI GGYRCC 1 cut(s) 893
BanII GRGCYC 1 cut(s) 1130
BbsI GAAGAC 2 cut(s) 836, 1056
Bbv12I GWGCWC 2 cut(s) 526, 1130
BbvI GCAGC 1 cut(s) 990
BccI CCATC 2 cut(s) 407, 1115
BcgI CGANNNNNNTGC 2 cut(s) 324, 358
BciVI GTATCC 2 cut(s) 433, 538
BcnI CCSGG 1 cut(s) 891
BcoDI GTCTC 1 cut(s) 1067
BfaI CTAG 2 cut(s) 686, 899
BfmI CTRYAG 2 cut(s) 478, 1102
BfuI GTATCC 2 cut(s) 433, 538
BisI GCNGC 2 cut(s) 24, 1004
BlsI GCNGC 2 cut(s) 25, 1005
BmcAI AGTACT 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 891
Bme18I GGWCC 2 cut(s) 962, 1025
BmgT120I GGNCC 3 cut(s) 289, 962, 1025
BmiI GGNNCC 2 cut(s) 895, 964
BmrFI CCNGG 1 cut(s) 891
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 4 cut(s) 143, 163, 189, 350
BmuI ACTGGG 1 cut(s) 253
BpiI GAAGAC 2 cut(s) 836, 1056
BpuEI CTTGAG 2 cut(s) 269, 419
BpuMI CCSGG 1 cut(s) 891
BsaAI YACGTR 1 cut(s) 422
BsaI GGTCTC 1 cut(s) 1067
BsaJI CCNNGG 2 cut(s) 12, 194
BsaXI ACNNNNNCTCC 2 cut(s) 556, 586
Bsc4I CCNNNNNNNGG 4 cut(s) 72, 889, 890, 1083
Bse1I ACTGG 4 cut(s) 259, 272, 527, 951
Bse3DI GCAATG 1 cut(s) 129
BseDI CCNNGG 2 cut(s) 12, 194
BseGI GGATG 2 cut(s) 208, 418
BseLI CCNNNNNNNGG 4 cut(s) 72, 889, 890, 1083
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 2 cut(s) 309, 663
BseNI ACTGG 4 cut(s) 259, 272, 527, 951
BseRI GAGGAG 2 cut(s) 55, 416
BseSI GKGCMC 2 cut(s) 526, 898
BseXI GCAGC 1 cut(s) 990
BshFI GGCC 5 cut(s) 11, 165, 291, 741, 1116
BshNI GGYRCC 1 cut(s) 893
BsiHKAI GWGCWC 2 cut(s) 526, 1130
BsiSI CCGG 1 cut(s) 890
BsiWI CGTACG 1 cut(s) 49
BslFI GGGAC 2 cut(s) 948, 1100
BslI CCNNNNNNNGG 4 cut(s) 72, 889, 890, 1083
BsmAI GTCTC 1 cut(s) 1067
BsmFI GGGAC 2 cut(s) 948, 1100
BsnI GGCC 5 cut(s) 11, 165, 291, 741, 1116
Bso31I GGTCTC 1 cut(s) 1067
Bsp1286I GDGCHC 3 cut(s) 526, 898, 1130
Bsp143I GATC 6 cut(s) 75, 146, 198, 298, 318, 511
BspACI CCGC 3 cut(s) 24, 111, 980
BspANI GGCC 5 cut(s) 11, 165, 291, 741, 1116
BspCNI CTCAG 2 cut(s) 308, 664
BspLI GGNNCC 2 cut(s) 895, 964
BspPI GGATC 4 cut(s) 83, 141, 206, 293
BspT107I GGYRCC 1 cut(s) 893
BspTNI GGTCTC 1 cut(s) 1067
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 4 cut(s) 259, 272, 527, 951
BssECI CCNNGG 2 cut(s) 12, 194
BssMI GATC 6 cut(s) 75, 146, 198, 298, 318, 511
Bst4CI ACNGT 6 cut(s) 32, 49, 155, 459, 482, 817
BstAPI GCANNNNNTGC 1 cut(s) 332
BstBAI YACGTR 1 cut(s) 422
BstC8I GCNNGC 6 cut(s) 88, 92, 127, 178, 791, 795
BstDEI CTNAG 4 cut(s) 295, 576, 672, 692
BstDSI CCRYGG 1 cut(s) 12
BstENI CCTNNNNNAGG 1 cut(s) 70
BstF5I GGATG 2 cut(s) 208, 418
BstKTI GATC 6 cut(s) 78, 149, 201, 301, 321, 514
BstMAI GTCTC 1 cut(s) 1067
BstMBI GATC 6 cut(s) 75, 146, 198, 298, 318, 511
BstMWI GCNNNNNNNGC 3 cut(s) 131, 182, 332
BstNSI RCATGY 2 cut(s) 797, 868
BstSCI CCNGG 1 cut(s) 889
BstSFI CTRYAG 2 cut(s) 478, 1102
BstSLI GKGCMC 2 cut(s) 526, 898
BstV1I GCAGC 1 cut(s) 990
BstV2I GAAGAC 2 cut(s) 836, 1056
BstX2I RGATCY 2 cut(s) 198, 298
BstYI RGATCY 2 cut(s) 198, 298
BsuI GTATCC 2 cut(s) 433, 538
BsuRI GGCC 5 cut(s) 11, 165, 291, 741, 1116
BtgI CCRYGG 1 cut(s) 12
BtgZI GCGATG 1 cut(s) 166
BtsCI GGATG 2 cut(s) 208, 418
BtsIMutI CAGTG 2 cut(s) 534, 813
Cac8I GCNNGC 6 cut(s) 88, 92, 127, 178, 791, 795
Cfr13I GGNCC 3 cut(s) 289, 962, 1025
Csp6I GTAC 7 cut(s) 50, 223, 419, 878, 887, 944, 1066
CviAII CATG 6 cut(s) 351, 377, 562, 794, 865, 1094
CviQI GTAC 7 cut(s) 50, 223, 419, 878, 887, 944, 1066
DdeI CTNAG 4 cut(s) 295, 576, 672, 692
DpnI GATC 6 cut(s) 77, 148, 200, 300, 320, 513
DpnII GATC 6 cut(s) 75, 146, 198, 298, 318, 511
EaeI YGGCCR 1 cut(s) 9
EciI GGCGGA 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 1128
Eco147I AGGCCT 2 cut(s) 165, 1116
Eco24I GRGCYC 1 cut(s) 1130
Eco31I GGTCTC 1 cut(s) 1067
Eco32I GATATC 1 cut(s) 19
Eco47I GGWCC 2 cut(s) 962, 1025
Eco53kI GAGCTC 1 cut(s) 1128
Eco57I CTGAAG 1 cut(s) 465
EcoICRI GAGCTC 1 cut(s) 1128
EcoNI CCTNNNNNAGG 1 cut(s) 70
EcoO109I RGGNCCY 2 cut(s) 289, 962
EcoRV GATATC 1 cut(s) 19
EcoT22I ATGCAT 1 cut(s) 1099
EcoT38I GRGCYC 1 cut(s) 1130
FaeI CATG 6 cut(s) 354, 380, 565, 797, 868, 1097
FaqI GGGAC 2 cut(s) 948, 1100
FatI CATG 6 cut(s) 350, 376, 561, 793, 864, 1093
FauI CCCGC 1 cut(s) 973
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 2 cut(s) 24, 1004
FokI GGATG 2 cut(s) 195, 425
FriOI GRGCYC 1 cut(s) 1130
Fsp4HI GCNGC 2 cut(s) 24, 1004
FspBI CTAG 2 cut(s) 686, 899
GluI GCNGC 2 cut(s) 24, 1004
HaeIII GGCC 5 cut(s) 11, 165, 291, 741, 1116
HapII CCGG 1 cut(s) 890
Hin1II CATG 6 cut(s) 354, 380, 565, 797, 868, 1097
HindIII AAGCTT 1 cut(s) 1148
HinfI GANTC 4 cut(s) 190, 245, 347, 565
HpaII CCGG 1 cut(s) 890
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 3 cut(s) 496, 524, 761
Hpy188I TCNGA 8 cut(s) 151, 198, 244, 250, 298, 346, 673, 1048
Hpy188III TCNNGA 2 cut(s) 470, 925
Hpy8I GTNNAC 3 cut(s) 496, 524, 761
Hpy99I CGWCG 3 cut(s) 73, 122, 155
HpyAV CCTTC 3 cut(s) 817, 830, 863
HpyCH4III ACNGT 6 cut(s) 32, 49, 155, 459, 482, 817
HpyCH4IV ACGT 2 cut(s) 330, 421
HpyCH4V TGCA 9 cut(s) 129, 134, 326, 335, 524, 603, 797, 826, 1097
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 182, 332
HpyF3I CTNAG 4 cut(s) 295, 576, 672, 692
HpySE526I ACGT 2 cut(s) 330, 421
Hsp92II CATG 6 cut(s) 354, 380, 565, 797, 868, 1097
Kzo9I GATC 6 cut(s) 75, 146, 198, 298, 318, 511
LmnI GCTCC 1 cut(s) 1125
Lsp1109I GCAGC 1 cut(s) 990
LweI GCATC 4 cut(s) 143, 163, 189, 350
MaeI CTAG 2 cut(s) 686, 899
MaeII ACGT 2 cut(s) 330, 421
MaeIII GTNAC 5 cut(s) 32, 529, 557, 695, 716
MalI GATC 6 cut(s) 77, 148, 200, 300, 320, 513
MboI GATC 6 cut(s) 75, 146, 198, 298, 318, 511
MboII GAAGA 5 cut(s) 94, 263, 463, 836, 1061
MflI RGATCY 2 cut(s) 198, 298
MhlI GDGCHC 3 cut(s) 526, 898, 1130
MluCI AATT 7 cut(s) 5, 366, 535, 770, 802, 920, 1029
MlyI GAGTC 2 cut(s) 356, 559
MmeI TCCRAC 2 cut(s) 174, 326
Mph1103I ATGCAT 1 cut(s) 1099
MseI TTAA 5 cut(s) 231, 408, 773, 1032, 1082
MslI CAYNNNNRTG 1 cut(s) 702
MspI CCGG 1 cut(s) 890
MspR9I CCNGG 1 cut(s) 891
MwoI GCNNNNNNNGC 3 cut(s) 131, 182, 332
NciI CCSGG 1 cut(s) 891
NdeII GATC 6 cut(s) 75, 146, 198, 298, 318, 511
NlaIII CATG 6 cut(s) 354, 380, 565, 797, 868, 1097
NlaIV GGNNCC 2 cut(s) 895, 964
NmeAIII GCCGAG 1 cut(s) 211
NmuCI GTSAC 3 cut(s) 32, 529, 695
NsiI ATGCAT 1 cut(s) 1099
NspI RCATGY 2 cut(s) 797, 868
PaeI GCATGC 1 cut(s) 797
PceI AGGCCT 2 cut(s) 165, 1116
PciI ACATGT 1 cut(s) 864
PcsI WCGNNNNNNNCGW 1 cut(s) 327
PfeI GAWTC 2 cut(s) 190, 245
Pfl23II CGTACG 1 cut(s) 49
PflFI GACNNNGTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 25, 1005
PleI GAGTC 2 cut(s) 355, 559
PpsI GAGTC 2 cut(s) 355, 559
Ppu21I YACGTR 1 cut(s) 422
PpuMI RGGWCCY 1 cut(s) 962
PscI ACATGT 1 cut(s) 864
PsiI TTATAA 1 cut(s) 1146
Psp124BI GAGCTC 1 cut(s) 1130
Psp5II RGGWCCY 1 cut(s) 962
PspLI CGTACG 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 895, 964
PspPI GGNCC 3 cut(s) 289, 962, 1025
PspPPI RGGWCCY 1 cut(s) 962
PsrI GAACNNNNNNTAC 2 cut(s) 927, 959
PsuI RGATCY 2 cut(s) 198, 298
PsyI GACNNNGTC 1 cut(s) 155
RsaI GTAC 7 cut(s) 51, 224, 420, 879, 888, 945, 1067
RsaNI GTAC 7 cut(s) 50, 223, 419, 878, 887, 944, 1066
RseI CAYNNNNRTG 1 cut(s) 702
SacI GAGCTC 1 cut(s) 1130
SaqAI TTAA 5 cut(s) 231, 408, 773, 1032, 1082
SatI GCNGC 2 cut(s) 24, 1004
Sau3AI GATC 6 cut(s) 75, 146, 198, 298, 318, 511
Sau96I GGNCC 3 cut(s) 289, 962, 1025
ScaI AGTACT 1 cut(s) 224
SchI GAGTC 2 cut(s) 356, 559
ScrFI CCNGG 1 cut(s) 891
SduI GDGCHC 3 cut(s) 526, 898, 1130
SfaNI GCATC 4 cut(s) 143, 163, 189, 350
SfcI CTRYAG 2 cut(s) 478, 1102
SinI GGWCC 2 cut(s) 962, 1025
SmiMI CAYNNNNRTG 1 cut(s) 702
SmlI CTYRAG 2 cut(s) 284, 398
SmoI CTYRAG 2 cut(s) 284, 398
SphI GCATGC 1 cut(s) 797
Sse9I AATT 7 cut(s) 5, 366, 535, 770, 802, 920, 1029
SseBI AGGCCT 2 cut(s) 165, 1116
SsiI CCGC 3 cut(s) 24, 111, 980
SspI AATATT 1 cut(s) 835
SspMI CTAG 2 cut(s) 686, 899
SstI GAGCTC 1 cut(s) 1130
StuI AGGCCT 2 cut(s) 165, 1116
StyD4I CCNGG 1 cut(s) 889
TaaI ACNGT 6 cut(s) 32, 49, 155, 459, 482, 817
TaiI ACGT 2 cut(s) 333, 424
TaqI TCGA 3 cut(s) 68, 120, 145
TasI AATT 7 cut(s) 5, 366, 535, 770, 802, 920, 1029
TatI WGTACW 2 cut(s) 222, 1065
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 2 cut(s) 190, 245
Tru1I TTAA 5 cut(s) 231, 408, 773, 1032, 1082
Tru9I TTAA 5 cut(s) 231, 408, 773, 1032, 1082
TscAI CASTG 2 cut(s) 534, 820
TseFI GTSAC 3 cut(s) 32, 529, 695
TseI GCWGC 1 cut(s) 1003
Tsp45I GTSAC 3 cut(s) 32, 529, 695
TspDTI ATGAA 3 cut(s) 17, 653, 799
TspGWI ACGGA 2 cut(s) 106, 1038
TspRI CASTG 2 cut(s) 534, 820
Tth111I GACNNNGTC 1 cut(s) 155
VneI GTGCAC 1 cut(s) 522
VpaK11BI GGWCC 2 cut(s) 962, 1025
XagI CCTNNNNNAGG 1 cut(s) 70
XapI RAATTY 1 cut(s) 920
XceI RCATGY 2 cut(s) 797, 868
XcmI CCANNNNNNNNNTGG 1 cut(s) 534
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 2 cut(s) 686, 899
ZrmI AGTACT 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.