pycom14g13430

Belongs to the glycosyl hydrolase 1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0000392
Physical Location & Seq
Forward (+)
16378868 .. 16380381
1514 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 861 bp
ATGATTTTCCAAGTGATTTTTACATTGGTGTCGGCACTGCAGCTACACAGACGGAAGGGGCAGCCGAAGAAGAAGGGAGAGGACCGAGTGTGTGGGATCACCGTGCCAAAATGCTCCCAGGTTCTCATAACCTTCAATATCTTTTCTTCATACATTACATATTGGAAAGCTCAGTTACAAAATTCAATTGCAGGTAGCATTCCGAACAGTGACAAATTCCCTTTTGCAATTGATGGATACAAAAGATGCAAGGAGGATATTAAGATCATCAAGGATCTCGGAGTAAATGCCTACAGATTCTCCATCTCGTGGAGTAGGATTTTACCACCGTATGTTTTGAAACCAATATTGTTATTTATGCTTACAAGATTTAAGGATGTGCTTGATTTAATGCGTTTTCTGTGTCCTGATGCAGGCATCGAGCCTTTTGTCACGATCTATCACTTCGACATGCCACAAGCGCTGCAAGTAAAATATGGGGGCTATTTGAATCGCAAGTTCGTGCAAGACTTCCAAGACTACAGTGACCTTTGCTTCAAGTTATTTGGAGACAGAGTCAAACACTGGTTCACCATTAATGAGCCGAGTTCTCTTGCAGTGTATGGCTATGAGATAGGGATTGCCCCACCAGGAAGGTGTTCCCTTCCAGAAGGACAATGTGGGTTGGGAGCTCCACCTCCAGGAACATGTATTGTGCCTGCCGGTCCCTGCTTTGGTGGAAACTCGTCAACGGAACCTTACATTGCCGCCCATAACCTTATCCTTGCTCACGCCGCAGTGGCAAAACTATACAGGGAGAAATATCAGGTCAAATTTAAAGGCTTGAAAGTAATCACATTCATCTTTATTCAAACTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110
Pfam Domains
Protein Families
Glyco_hydro_1

Protein Analysis

287

Amino Acids

32.37

Weight (kDa)

9.29

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_1 PF00232 65 - 269 4.8e-48 Glycosyl hydrolase family 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000392)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25630 AT2G44450 AT2G44450 AT3G60130 AT3G60130 AT3G60130 AT5G42260 AT5G44640
fragaria_vesca FvH4_5g07160 FvH4_5g07180 FvH4_5g07811 FvH4_5g07831 FvH4_5g07831 FvH4_5g07832 FvH4_6g19950 FvH4_6g19950 FvH4_6g19950
malus_domestica MD01G1120900.v1.1 MD06G1144600.v1.1 MD06G1144800.v1.1 MD06G1145700.v1.1 MD06G1146100.v1.1 MD06G1147000.v1.1 MD08G1072600.v1.1 MD08G1142300.v1.1 MD08G1191100.v1.1 MD14G1159400.v1.1 MD14G1160300.v1.1 MD14G1160600.v1.1 MD14G1160700.v1.1 MD14G1161400.v1.1
prunus_persica Prupe.1G525400_v2.0.a1 Prupe.1G583900_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G153200_v2.0.a1 Prupe.5G156500_v2.0.a1
pyrus_communis pycom06g13390 pycom06g13520 pycom06g13560 pycom06g13640 pycom08g12030 pycom14g13310 pycom14g13430
rosa_chinensis RchiOBHm_Chr3g0475401 RchiOBHm_Chr7g0190551 RchiOBHm_Chr7g0190631 RchiOBHm_Chr7g0190641 RchiOBHm_Chr7g0191241 RchiOBHm_Chr7g0191251 RchiOBHm_Chr7g0191261 RchiOBHm_Chr7g0202591
rosa_laevigata RLG00000004507 RLG00000004508 RLG00000004516 RLG00000023846 RLG00000035079
rosa_multiflora Rmu_co8005672.1_g000001 Rmu_co8018538.1_g000001 Rmu_sc0000526.1_g000002 Rmu_sc0001786.1_g000011 Rmu_sc0006709.1_g000007 Rmu_sc0006709.1_g000008 Rmu_sc0016637.1_g000004
rosa_roxburghii Rroxscaffold_1G00018560 Rroxscaffold_1G00024050 Rroxscaffold_3G00264440 Rroxscaffold_3G00264450 Rroxscaffold_4G00306640 Rroxscaffold_6G00406340
rosa_rugosa Rorug03G0295600 Rorug05G0298500 Rorug06G0072900 Rorug06G0505100 Rorug06G0505800 Rorug06G0505900 Rorug06G0506000
rosa_samantha Rh1CG344200 Rh2AG107900 Rh3AG198700 Rh3CG223000 Rh5AG369500 Rh5BG469700 Rh5BG469800 Rh5DG483000 Rh7AG111700 Rh7AG112400 Rh7AG112500 Rh7AG112600 Rh7CG116400 Rh7CG117400 Rh7CG117500 Rh7CG117600 Rh7CG122100 Rh7CG122200 Rh7DG115600 Rh7DG116400 Rh7DG116500
rosa_wichuraiana Rw3G018030 Rw7G009740 Rw7G009810 Rw7G009820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 182
AccB7I CCANNNNNTGG 1 cut(s) 309
AciI CCGC 2 cut(s) 747, 774
AclWI GGATC 2 cut(s) 104, 282
AcsI RAATTY 3 cut(s) 181, 215, 812
AfeI AGCGCT 1 cut(s) 462
AfiI CCNNNNNNNGG 4 cut(s) 309, 413, 680, 713
AflIII ACRYGT 1 cut(s) 686
AgsI TTSAA 7 cut(s) 136, 186, 340, 490, 538, 826, 851
AjnI CCWGG 3 cut(s) 117, 628, 679
AluBI AGCT 3 cut(s) 43, 170, 671
AluI AGCT 3 cut(s) 43, 170, 671
Alw21I GWGCWC 1 cut(s) 673
Alw26I GTCTC 1 cut(s) 543
AlwI GGATC 2 cut(s) 104, 282
Aor51HI AGCGCT 1 cut(s) 462
ApeKI GCWGC 3 cut(s) 40, 61, 463
ApoI RAATTY 3 cut(s) 181, 215, 812
AseI ATTAAT 1 cut(s) 576
Asp700I GAANNNNTTC 1 cut(s) 637
AspLEI GCGC 1 cut(s) 463
AspS9I GGNCC 2 cut(s) 82, 704
AsuHPI GGTGA 2 cut(s) 91, 562
AvaII GGWCC 2 cut(s) 82, 704
BanII GRGCYC 1 cut(s) 673
BauI CACGAG 1 cut(s) 307
Bbv12I GWGCWC 1 cut(s) 673
BbvI GCAGC 3 cut(s) 52, 73, 450
BccI CCATC 2 cut(s) 227, 311
BciT130I CCWGG 3 cut(s) 119, 630, 681
BciVI GTATCC 1 cut(s) 230
BcoDI GTCTC 1 cut(s) 543
BfmI CTRYAG 3 cut(s) 38, 292, 520
BfoI RGCGCY 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 182
BfuI GTATCC 1 cut(s) 230
BglI GCCNNNNNGGC 1 cut(s) 779
BisI GCNGC 5 cut(s) 41, 62, 464, 747, 774
BlsI GCNGC 5 cut(s) 42, 63, 465, 748, 775
Bme1390I CCNGG 3 cut(s) 119, 630, 681
Bme18I GGWCC 2 cut(s) 82, 704
BmgT120I GGNCC 2 cut(s) 82, 704
BmiI GGNNCC 2 cut(s) 706, 735
BmrFI CCNGG 3 cut(s) 119, 630, 681
BmsI GCATC 3 cut(s) 236, 400, 426
BpmI CTGGAG 1 cut(s) 663
BsaJI CCNNGG 1 cut(s) 117
BsaXI ACNNNNNCTCC 4 cut(s) 284, 314, 540, 570
Bsc4I CCNNNNNNNGG 4 cut(s) 309, 413, 680, 713
Bse118I RCCGGY 1 cut(s) 701
Bse1I ACTGG 1 cut(s) 569
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 3 cut(s) 119, 630, 681
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 382
BseLI CCNNNNNNNGG 4 cut(s) 309, 413, 680, 713
BseMI GCAATG 1 cut(s) 741
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 1 cut(s) 569
BseXI GCAGC 3 cut(s) 52, 73, 450
BsiHKAI GWGCWC 1 cut(s) 673
BsiSI CCGG 1 cut(s) 702
BslFI GGGAC 1 cut(s) 690
BslI CCNNNNNNNGG 4 cut(s) 309, 413, 680, 713
BsmAI GTCTC 1 cut(s) 543
BsmFI GGGAC 1 cut(s) 690
BsmI GAATGC 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 673
Bsp143I GATC 4 cut(s) 96, 264, 274, 435
BspACI CCGC 2 cut(s) 747, 774
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 706, 735
BspMAI CTGCAG 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 2 cut(s) 104, 282
BsrDI GCAATG 1 cut(s) 741
BsrFI RCCGGY 1 cut(s) 701
BsrI ACTGG 1 cut(s) 569
BssAI RCCGGY 1 cut(s) 701
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 4 cut(s) 96, 264, 274, 435
BssSI CACGAG 1 cut(s) 307
Bst2BI CACGAG 1 cut(s) 307
Bst2UI CCWGG 3 cut(s) 119, 630, 681
Bst4CI ACNGT 4 cut(s) 103, 209, 330, 524
BstC8I GCNNGC 2 cut(s) 415, 699
BstDEI CTNAG 1 cut(s) 171
BstENI CCTNNNNNAGG 1 cut(s) 411
BstF5I GGATG 1 cut(s) 382
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 1 cut(s) 463
BstKTI GATC 4 cut(s) 99, 267, 277, 438
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 4 cut(s) 96, 264, 274, 435
BstMWI GCNNNNNNNGC 3 cut(s) 460, 773, 779
BstNI CCWGG 3 cut(s) 119, 630, 681
BstNSI RCATGY 2 cut(s) 454, 690
BstSCI CCNGG 3 cut(s) 117, 628, 679
BstSFI CTRYAG 3 cut(s) 38, 292, 520
BstV1I GCAGC 3 cut(s) 52, 73, 450
BstX2I RGATCY 1 cut(s) 274
BstYI RGATCY 1 cut(s) 274
BsuI GTATCC 1 cut(s) 230
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 3 cut(s) 35, 603, 783
BtsIMutI CAGTG 6 cut(s) 35, 214, 529, 562, 603, 783
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 2 cut(s) 415, 699
CfoI GCGC 1 cut(s) 463
Cfr10I RCCGGY 1 cut(s) 701
Cfr13I GGNCC 2 cut(s) 82, 704
CviAII CATG 2 cut(s) 451, 687
CviJI RGCY 9 cut(s) 43, 64, 170, 424, 483, 583, 606, 671, 822
CviKI_1 RGCY 9 cut(s) 43, 64, 170, 424, 483, 583, 606, 671, 822
DdeI CTNAG 1 cut(s) 171
DpnI GATC 4 cut(s) 98, 266, 276, 437
DpnII GATC 4 cut(s) 96, 264, 274, 435
DraI TTTAAA 1 cut(s) 817
Ecl136II GAGCTC 1 cut(s) 671
Eco24I GRGCYC 1 cut(s) 673
Eco47I GGWCC 2 cut(s) 82, 704
Eco47III AGCGCT 1 cut(s) 462
Eco53kI GAGCTC 1 cut(s) 671
EcoICRI GAGCTC 1 cut(s) 671
EcoNI CCTNNNNNAGG 1 cut(s) 411
EcoRII CCWGG 3 cut(s) 117, 628, 679
EcoT38I GRGCYC 1 cut(s) 673
FaeI CATG 2 cut(s) 454, 690
FaqI GGGAC 1 cut(s) 690
FatI CATG 2 cut(s) 450, 686
Fnu4HI GCNGC 5 cut(s) 41, 62, 464, 747, 774
FokI GGATG 1 cut(s) 389
FriOI GRGCYC 1 cut(s) 673
Fsp4HI GCNGC 5 cut(s) 41, 62, 464, 747, 774
GlaI GCGC 1 cut(s) 462
GluI GCNGC 5 cut(s) 41, 62, 464, 747, 774
GsuI CTGGAG 1 cut(s) 663
HaeII RGCGCY 1 cut(s) 464
HapII CCGG 1 cut(s) 702
HhaI GCGC 1 cut(s) 463
Hin1II CATG 2 cut(s) 454, 690
Hin6I GCGC 1 cut(s) 461
HinP1I GCGC 1 cut(s) 461
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HinfI GANTC 3 cut(s) 297, 490, 555
HpaII CCGG 1 cut(s) 702
HphI GGTGA 2 cut(s) 91, 562
Hpy166II GTNNAC 2 cut(s) 570, 729
Hpy188I TCNGA 2 cut(s) 204, 281
Hpy188III TCNNGA 3 cut(s) 407, 433, 647
Hpy8I GTNNAC 2 cut(s) 570, 729
HpyAV CCTTC 6 cut(s) 49, 67, 142, 627, 644, 653
HpyCH4III ACNGT 4 cut(s) 103, 209, 330, 524
HpyCH4V TGCA 8 cut(s) 40, 191, 227, 249, 413, 466, 505, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 460, 773, 779
HpyF3I CTNAG 1 cut(s) 171
Hsp92II CATG 2 cut(s) 454, 690
HspAI GCGC 1 cut(s) 461
Kzo9I GATC 4 cut(s) 96, 264, 274, 435
LmnI GCTCC 3 cut(s) 119, 668, 676
Lsp1109I GCAGC 3 cut(s) 52, 73, 450
LweI GCATC 3 cut(s) 236, 400, 426
MaeIII GTNAC 4 cut(s) 174, 209, 430, 524
MalI GATC 4 cut(s) 98, 266, 276, 437
MboI GATC 4 cut(s) 96, 264, 274, 435
MboII GAAGA 3 cut(s) 79, 82, 138
MfeI CAATTG 2 cut(s) 186, 228
MflI RGATCY 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 673
MluCI AATT 5 cut(s) 181, 186, 215, 228, 812
MlyI GAGTC 1 cut(s) 564
MnlI CCTC 3 cut(s) 73, 247, 687
MroXI GAANNNNTTC 1 cut(s) 637
MseI TTAA 6 cut(s) 261, 372, 389, 576, 816, 859
MspI CCGG 1 cut(s) 702
MspR9I CCNGG 3 cut(s) 119, 630, 681
MunI CAATTG 2 cut(s) 186, 228
Mva1269I GAATGC 1 cut(s) 198
MvaI CCWGG 3 cut(s) 119, 630, 681
MwoI GCNNNNNNNGC 3 cut(s) 460, 773, 779
NdeII GATC 4 cut(s) 96, 264, 274, 435
NlaIII CATG 2 cut(s) 454, 690
NlaIV GGNNCC 2 cut(s) 706, 735
NmeAIII GCCGAG 1 cut(s) 609
NmuCI GTSAC 3 cut(s) 209, 430, 524
NspI RCATGY 2 cut(s) 454, 690
PciI ACATGT 1 cut(s) 686
PctI GAATGC 1 cut(s) 198
PdmI GAANNNNTTC 1 cut(s) 637
PfeI GAWTC 2 cut(s) 297, 490
PflFI GACNNNGTC 1 cut(s) 554
PflMI CCANNNNNTGG 1 cut(s) 309
PfoI TCCNGGA 1 cut(s) 679
PkrI GCNGC 5 cut(s) 42, 63, 465, 748, 775
PleI GAGTC 1 cut(s) 563
PpsI GAGTC 1 cut(s) 563
PscI ACATGT 1 cut(s) 686
PshBI ATTAAT 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 673
Psp6I CCWGG 3 cut(s) 117, 628, 679
PspGI CCWGG 3 cut(s) 117, 628, 679
PspN4I GGNNCC 2 cut(s) 706, 735
PspPI GGNCC 2 cut(s) 82, 704
PstI CTGCAG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 274
PsyI GACNNNGTC 1 cut(s) 554
SacI GAGCTC 1 cut(s) 673
SaqAI TTAA 6 cut(s) 261, 372, 389, 576, 816, 859
SatI GCNGC 5 cut(s) 41, 62, 464, 747, 774
Sau3AI GATC 4 cut(s) 96, 264, 274, 435
Sau96I GGNCC 2 cut(s) 82, 704
SchI GAGTC 1 cut(s) 564
ScrFI CCNGG 3 cut(s) 119, 630, 681
SduI GDGCHC 1 cut(s) 673
SfaNI GCATC 3 cut(s) 236, 400, 426
SfcI CTRYAG 3 cut(s) 38, 292, 520
SinI GGWCC 2 cut(s) 82, 704
Sse9I AATT 5 cut(s) 181, 186, 215, 228, 812
SsiI CCGC 2 cut(s) 747, 774
SspI AATATT 1 cut(s) 348
SstI GAGCTC 1 cut(s) 673
StyD4I CCNGG 3 cut(s) 117, 628, 679
TaaI ACNGT 4 cut(s) 103, 209, 330, 524
TaqI TCGA 2 cut(s) 420, 447
TaqII GACCGA 1 cut(s) 99
TasI AATT 5 cut(s) 181, 186, 215, 228, 812
TauI GCSGC 2 cut(s) 749, 776
TfiI GAWTC 2 cut(s) 297, 490
Tru1I TTAA 6 cut(s) 261, 372, 389, 576, 816, 859
Tru9I TTAA 6 cut(s) 261, 372, 389, 576, 816, 859
TscAI CASTG 6 cut(s) 42, 214, 529, 569, 603, 783
TseFI GTSAC 3 cut(s) 209, 430, 524
TseI GCWGC 3 cut(s) 40, 61, 463
Tsp45I GTSAC 3 cut(s) 209, 430, 524
TspDTI ATGAA 2 cut(s) 138, 829
TspGWI ACGGA 2 cut(s) 67, 746
TspRI CASTG 6 cut(s) 42, 214, 529, 569, 603, 783
Tth111I GACNNNGTC 1 cut(s) 554
Van91I CCANNNNNTGG 1 cut(s) 309
VpaK11BI GGWCC 2 cut(s) 82, 704
VspI ATTAAT 1 cut(s) 576
XagI CCTNNNNNAGG 1 cut(s) 411
XapI RAATTY 3 cut(s) 181, 215, 812
XceI RCATGY 2 cut(s) 454, 690
XmnI GAANNNNTTC 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.