Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

32778888 .. 32781382

Gene Structure 2495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56784

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGCCAATCTGCAAAGGATACCTCATTTTACCGAGAAGATTGCGACCTGCAAAGAAAGCCCACTGTATTTTGAAAACCGAGTTTCAGATTATCGAAATAGGGCGAAATAAGGCAAATCCTTGTAAGTATTGGCTGCCGGAAGGAAGGAGTAGACTCAGGGCTGCTCCAACTGCGCTGTCGAAGAGACATGCTGATGGTTCATTGCCAATTGAAGATTTCAACATAGTACTTGAAAATCAGAGTGGGAAGAAAGTACAAATGGGATCGGAGACTGATCAGCGGGCAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACAAAGATGCAATGGAAGTGCTCAGCATGGAGGAGGTTTGTTACTGGAGGCTTTCTCTCTGCGATCCATCGGTTATTAAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATGGTTTGGTGTTATTTCATGCTTAGAGACATCAACTGGCTCTCAGTGGCAAGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAGACTCCTTCAGGCAGGTCGTTATCCAGAGCGTGCACTATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACCGTGGTCAGGTTGATAAGTCAATGAAGGTGTTGACTTCTGTACAAGAGTTGTTCACCCAGGTTTGGAGCTTGCTGCTGAAGCACTATGAGGAAATGACAGTGGAGAAGGCATTCGATTTGACAAATCCACAGACCAATTCTTCCATACAGGTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

270

Amino Acids

31.11

Weight (kDa)

9.24

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	55, 578
AccI	GTMKAC	1 cut(s)	151
AciI	CCGC	2 cut(s)	280, 644
AclWI	GGATC	2 cut(s)	271, 401
AcsI	RAATTY	1 cut(s)	510
AcuI	CTGAAG	2 cut(s)	566, 752
AfaI	GTAC	3 cut(s)	228, 255, 696
AfiI	CCNNNNNNNGG	2 cut(s)	661, 717
AgsI	TTSAA	5 cut(s)	73, 212, 220, 233, 542
AjnI	CCWGG	1 cut(s)	711
AluBI	AGCT	4 cut(s)	424, 548, 628, 723
AluI	AGCT	4 cut(s)	424, 548, 628, 723
Alw21I	GWGCWC	3 cut(s)	366, 550, 610
Alw26I	GTCTC	3 cut(s)	178, 263, 477
Alw44I	GTGCAC	1 cut(s)	606
AlwI	GGATC	2 cut(s)	271, 401
ApaLI	GTGCAC	1 cut(s)	606
ApeKI	GCWGC	4 cut(s)	133, 161, 628, 727
ApoI	RAATTY	1 cut(s)	510
Asp700I	GAANNNNTTC	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	644, 700
BaeGI	GKGCMC	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	550
BauI	CACGAG	1 cut(s)	567
Bbv12I	GWGCWC	3 cut(s)	366, 550, 610
BbvI	GCAGC	4 cut(s)	120, 148, 615, 714
BccI	CCATC	2 cut(s)	188, 418
BcgI	CGANNNNNNTGC	2 cut(s)	22, 56
BciT130I	CCWGG	1 cut(s)	713
BciVI	GTATCC	1 cut(s)	11
BclI	TGATCA	1 cut(s)	274
BcoDI	GTCTC	3 cut(s)	178, 263, 477
BfuAI	ACCTGC	2 cut(s)	55, 578
BfuI	GTATCC	1 cut(s)	11
BisI	GCNGC	5 cut(s)	134, 162, 629, 645, 728
BlpI	GCTNAGC	1 cut(s)	365
BlsI	GCNGC	5 cut(s)	135, 163, 630, 646, 729
BmcAI	AGTACT	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	713
BmrFI	CCNGG	1 cut(s)	713
BmsI	GCATC	1 cut(s)	340
BplI	GAGNNNNNCTC	2 cut(s)	382, 414
BpmI	CTGGAG	2 cut(s)	409, 644
Bpu1102I	GCTNAGC	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	539
Bsa29I	ATCGAT	1 cut(s)	453
BsaJI	CCNNGG	2 cut(s)	655, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	661, 717
Bse1I	ACTGG	3 cut(s)	392, 497, 627
Bse3DI	GCAATG	2 cut(s)	200, 360
BseBI	CCWGG	1 cut(s)	713
BseCI	ATCGAT	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	655, 711
BseLI	CCNNNNNNNGG	2 cut(s)	661, 717
BseMI	GCAATG	2 cut(s)	200, 360
BseMII	CTCAG	3 cut(s)	169, 379, 513
BseNI	ACTGG	3 cut(s)	392, 497, 627
BseRI	GAGGAG	1 cut(s)	389
BseSI	GKGCMC	1 cut(s)	610
BseXI	GCAGC	4 cut(s)	120, 148, 615, 714
BshVI	ATCGAT	1 cut(s)	453
BsiHKAI	GWGCWC	3 cut(s)	366, 550, 610
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	2 cut(s)	661, 717
BsmAI	GTCTC	3 cut(s)	178, 263, 477
BsmI	GAATGC	1 cut(s)	764
Bsp1286I	GDGCHC	3 cut(s)	366, 550, 610
Bsp1407I	TGTACA	1 cut(s)	694
Bsp143I	GATC	3 cut(s)	263, 274, 406
Bsp1720I	GCTNAGC	1 cut(s)	365
BspACI	CCGC	2 cut(s)	280, 644
BspCNI	CTCAG	3 cut(s)	168, 378, 512
BspDI	ATCGAT	1 cut(s)	453
BspHI	TCATGA	1 cut(s)	288
BspMI	ACCTGC	2 cut(s)	55, 578
BspPI	GGATC	2 cut(s)	271, 401
BsrDI	GCAATG	2 cut(s)	200, 360
BsrGI	TGTACA	1 cut(s)	694
BsrI	ACTGG	3 cut(s)	392, 497, 627
BssECI	CCNNGG	2 cut(s)	655, 711
BssMI	GATC	3 cut(s)	263, 274, 406
BssSI	CACGAG	1 cut(s)	567
Bst2BI	CACGAG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	713
Bst4CI	ACNGT	3 cut(s)	65, 656, 754
Bst6I	CTCTTC	2 cut(s)	176, 568
BstAUI	TGTACA	1 cut(s)	694
BstC8I	GCNNGC	3 cut(s)	282, 606, 725
BstDEI	CTNAG	4 cut(s)	155, 365, 479, 499
BstDSI	CCRYGG	1 cut(s)	655
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	3 cut(s)	266, 277, 409
BstMAI	GTCTC	3 cut(s)	178, 263, 477
BstMBI	GATC	3 cut(s)	263, 274, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	56, 170, 733
BstNI	CCWGG	1 cut(s)	713
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	711
BstSLI	GKGCMC	1 cut(s)	610
BstV1I	GCAGC	4 cut(s)	120, 148, 615, 714
Bsu15I	ATCGAT	1 cut(s)	453
BsuI	GTATCC	1 cut(s)	11
BsuTUI	ATCGAT	1 cut(s)	453
BtgI	CCRYGG	1 cut(s)	655
BtsIMutI	CAGTG	3 cut(s)	61, 507, 759
BveI	ACCTGC	2 cut(s)	55, 578
Cac8I	GCNNGC	3 cut(s)	282, 606, 725
CciI	TCATGA	1 cut(s)	288
CfoI	GCGC	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	3 cut(s)	227, 254, 695
CviAII	CATG	5 cut(s)	188, 289, 370, 475, 551
CviQI	GTAC	3 cut(s)	227, 254, 695
DdeI	CTNAG	4 cut(s)	155, 365, 479, 499
DpnI	GATC	3 cut(s)	265, 276, 408
DpnII	GATC	3 cut(s)	263, 274, 406
Eam1104I	CTCTTC	2 cut(s)	176, 568
EarI	CTCTTC	2 cut(s)	176, 568
Ecl136II	GAGCTC	1 cut(s)	548
Eco24I	GRGCYC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	548
Eco57I	CTGAAG	2 cut(s)	566, 752
EcoICRI	GAGCTC	1 cut(s)	548
EcoRI	GAATTC	1 cut(s)	510
EcoRII	CCWGG	1 cut(s)	711
EcoT38I	GRGCYC	1 cut(s)	550
FaeI	CATG	5 cut(s)	191, 292, 373, 478, 554
FatI	CATG	5 cut(s)	187, 288, 369, 474, 550
FauI	CCCGC	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	5 cut(s)	134, 162, 629, 645, 728
FriOI	GRGCYC	1 cut(s)	550
Fsp4HI	GCNGC	5 cut(s)	134, 162, 629, 645, 728
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	5 cut(s)	134, 162, 629, 645, 728
GsuI	CTGGAG	2 cut(s)	409, 644
HapII	CCGG	1 cut(s)	137
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	5 cut(s)	191, 292, 373, 478, 554
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	687
HindII	GTYRAC	1 cut(s)	687
HinfI	GANTC	3 cut(s)	153, 560, 576
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	2 cut(s)	644, 700
Hpy166II	GTNNAC	4 cut(s)	152, 608, 687, 708
Hpy188I	TCNGA	3 cut(s)	87, 240, 268
Hpy188III	TCNNGA	3 cut(s)	289, 539, 599
Hpy8I	GTNNAC	4 cut(s)	152, 608, 687, 708
HpyAV	CCTTC	8 cut(s)	134, 138, 447, 527, 590, 629, 673, 754
HpyCH4III	ACNGT	3 cut(s)	65, 656, 754
HpyCH4V	TGCA	6 cut(s)	12, 50, 317, 353, 448, 608
HpyF10VI	GCNNNNNNNGC	3 cut(s)	56, 170, 733
HpyF3I	CTNAG	4 cut(s)	155, 365, 479, 499
Hsp92II	CATG	5 cut(s)	191, 292, 373, 478, 554
HspAI	GCGC	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	263, 274, 406
LmnI	GCTCC	3 cut(s)	169, 625, 720
Lsp1109I	GCAGC	4 cut(s)	120, 148, 615, 714
LweI	GCATC	1 cut(s)	340
MaeIII	GTNAC	3 cut(s)	303, 383, 805
MalI	GATC	3 cut(s)	265, 276, 408
MboI	GATC	3 cut(s)	263, 274, 406
MboII	GAAGA	6 cut(s)	48, 193, 224, 259, 555, 786
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	3 cut(s)	366, 550, 610
MluCI	AATT	4 cut(s)	207, 340, 510, 790
MlyI	GAGTC	3 cut(s)	147, 554, 570
MmeI	TCCRAC	1 cut(s)	191
MnlI	CCTC	5 cut(s)	32, 367, 370, 384, 736
MroXI	GAANNNNTTC	1 cut(s)	764
MseI	TTAA	2 cut(s)	330, 420
MslI	CAYNNNNRTG	3 cut(s)	192, 312, 803
MspA1I	CMGCKG	1 cut(s)	280
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	713
MunI	CAATTG	1 cut(s)	207
Mva1269I	GAATGC	1 cut(s)	764
MvaI	CCWGG	1 cut(s)	713
MwoI	GCNNNNNNNGC	3 cut(s)	56, 170, 733
NdeII	GATC	3 cut(s)	263, 274, 406
NlaIII	CATG	5 cut(s)	191, 292, 373, 478, 554
NmuCI	GTSAC	1 cut(s)	805
NspI	RCATGY	1 cut(s)	191
PagI	TCATGA	1 cut(s)	288
PctI	GAATGC	1 cut(s)	764
PdmI	GAANNNNTTC	1 cut(s)	764
PkrI	GCNGC	5 cut(s)	135, 163, 630, 646, 729
PleI	GAGTC	3 cut(s)	147, 554, 570
PpsI	GAGTC	3 cut(s)	147, 554, 570
Psp124BI	GAGCTC	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	711
PspGI	CCWGG	1 cut(s)	711
RsaI	GTAC	3 cut(s)	228, 255, 696
RsaNI	GTAC	3 cut(s)	227, 254, 695
RseI	CAYNNNNRTG	3 cut(s)	192, 312, 803
SacI	GAGCTC	1 cut(s)	550
SaqAI	TTAA	2 cut(s)	330, 420
SatI	GCNGC	5 cut(s)	134, 162, 629, 645, 728
Sau3AI	GATC	3 cut(s)	263, 274, 406
ScaI	AGTACT	1 cut(s)	228
SchI	GAGTC	3 cut(s)	147, 554, 570
ScrFI	CCNGG	1 cut(s)	713
SduI	GDGCHC	3 cut(s)	366, 550, 610
SfaNI	GCATC	1 cut(s)	340
SmiMI	CAYNNNNRTG	3 cut(s)	192, 312, 803
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	4 cut(s)	207, 340, 510, 790
SsiI	CCGC	2 cut(s)	280, 644
SstI	GAGCTC	1 cut(s)	550
StyD4I	CCNGG	1 cut(s)	711
TaaI	ACNGT	3 cut(s)	65, 656, 754
TaqI	TCGA	5 cut(s)	93, 179, 429, 453, 768
TasI	AATT	4 cut(s)	207, 340, 510, 790
TatI	WGTACW	3 cut(s)	226, 253, 694
TauI	GCSGC	1 cut(s)	647
Tru1I	TTAA	2 cut(s)	330, 420
Tru9I	TTAA	2 cut(s)	330, 420
TscAI	CASTG	3 cut(s)	68, 507, 759
TseFI	GTSAC	1 cut(s)	805
TseI	GCWGC	4 cut(s)	133, 161, 628, 727
Tsp45I	GTSAC	1 cut(s)	805
TspDTI	ATGAA	3 cut(s)	189, 463, 692
TspRI	CASTG	3 cut(s)	68, 507, 759
VneI	GTGCAC	1 cut(s)	606
XapI	RAATTY	1 cut(s)	510
XceI	RCATGY	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	764
ZrmI	AGTACT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.