Rh4BG145100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000694
Physical Location & Seq
Forward (+)
25888718 .. 25924702
35985 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG145100.1

Sequence Viewer

Length: 351 bp
ATGGCTGTTTGTGTCCCTCAGTCCATCGAGTCCCTCACTCTATTTCCCACTATAAATCAGACGCACATCCCCTACAATGGGGACTCCACCATTTCAATCAAGACCCCTTTCCCTCTGCTCTGGTGTCCTGTGAACCCAACTAAACGACACCCTCGCCATGTAGAGGCAGCTTCACCAAACAGTTCTCACATTCACAACCCAGATTCAGTTGTTGTGATTGAAAAAGGTTTTTCCTTTGATCAGTGTTATAGGTTGAGTATGTGTGTGTGTCTTTATTCCATTGCAGCTGTTGATCGTGTCATGGTAAGAGGGAGGCTTCCCTACACTACCAGGGCCAGGGCGAACCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

8.97

Isoelectric Point (pI)

55.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000694)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa Rorug07G0218300
rosa_samantha Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 4 cut(s) 77, 78, 163, 336
AgsI TTSAA 2 cut(s) 96, 221
AjnI CCWGG 2 cut(s) 329, 335
AluBI AGCT 2 cut(s) 170, 287
AluI AGCT 2 cut(s) 170, 287
AoxI GGCC 1 cut(s) 333
ApeKI GCWGC 2 cut(s) 167, 284
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 165
BbvI GCAGC 2 cut(s) 179, 296
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 331, 337
BclI TGATCA 1 cut(s) 238
BisI GCNGC 2 cut(s) 168, 285
BlsI GCNGC 2 cut(s) 169, 286
Bme1390I CCNGG 2 cut(s) 331, 337
BmgT120I GGNCC 1 cut(s) 333
BmrFI CCNGG 2 cut(s) 331, 337
BsaJI CCNNGG 2 cut(s) 330, 336
Bsc4I CCNNNNNNNGG 4 cut(s) 77, 78, 163, 336
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 2 cut(s) 331, 337
BseDI CCNNGG 2 cut(s) 330, 336
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 4 cut(s) 77, 78, 163, 336
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 32
BseXI GCAGC 2 cut(s) 179, 296
BshFI GGCC 1 cut(s) 335
BslFI GGGAC 2 cut(s) 16, 95
BslI CCNNNNNNNGG 4 cut(s) 77, 78, 163, 336
BsmFI GGGAC 2 cut(s) 16, 95
BsnI GGCC 1 cut(s) 335
Bsp143I GATC 2 cut(s) 238, 292
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 1 cut(s) 31
BsrDI GCAATG 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 330, 336
BssMI GATC 2 cut(s) 238, 292
Bst2UI CCWGG 2 cut(s) 331, 337
Bst4CI ACNGT 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 18
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 2 cut(s) 241, 295
BstMBI GATC 2 cut(s) 238, 292
BstNI CCWGG 2 cut(s) 331, 337
BstSCI CCNGG 2 cut(s) 329, 335
BstV1I GCAGC 2 cut(s) 179, 296
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 333
CseI GACGC 1 cut(s) 70
CviAII CATG 2 cut(s) 158, 301
CviJI RGCY 5 cut(s) 5, 170, 287, 316, 335
CviKI_1 RGCY 5 cut(s) 5, 170, 287, 316, 335
DdeI CTNAG 1 cut(s) 18
DpnI GATC 2 cut(s) 240, 294
DpnII GATC 2 cut(s) 238, 292
EcoRII CCWGG 2 cut(s) 329, 335
FaeI CATG 2 cut(s) 161, 304
FaiI YATR 6 cut(s) 53, 159, 249, 260, 302, 349
FaqI GGGAC 2 cut(s) 16, 95
FatI CATG 2 cut(s) 157, 300
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 2 cut(s) 168, 285
FokI GGATG 1 cut(s) 53
Fsp4HI GCNGC 2 cut(s) 168, 285
GluI GCNGC 2 cut(s) 168, 285
HaeIII GGCC 1 cut(s) 335
HgaI GACGC 1 cut(s) 70
Hin1II CATG 2 cut(s) 161, 304
HinfI GANTC 3 cut(s) 29, 83, 203
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 133
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 133
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 284
HpyF3I CTNAG 1 cut(s) 18
Hsp92II CATG 2 cut(s) 161, 304
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 2 cut(s) 238, 292
LpnPI CCDG 6 cut(s) 106, 141, 213, 316, 322, 343
Lsp1109I GCAGC 2 cut(s) 179, 296
MalI GATC 2 cut(s) 240, 294
MboI GATC 2 cut(s) 238, 292
MlyI GAGTC 2 cut(s) 38, 77
MnlI CCTC 7 cut(s) 27, 44, 123, 157, 162, 302, 306
MspA1I CMGCKG 1 cut(s) 287
MspR9I CCNGG 2 cut(s) 331, 337
MvaI CCWGG 2 cut(s) 331, 337
NdeII GATC 2 cut(s) 238, 292
NlaIII CATG 2 cut(s) 161, 304
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 169, 286
PleI GAGTC 2 cut(s) 37, 77
PpsI GAGTC 2 cut(s) 37, 77
Psp6I CCWGG 2 cut(s) 329, 335
PspGI CCWGG 2 cut(s) 329, 335
PspPI GGNCC 1 cut(s) 333
PvuII CAGCTG 1 cut(s) 287
SatI GCNGC 2 cut(s) 168, 285
Sau3AI GATC 2 cut(s) 238, 292
Sau96I GGNCC 1 cut(s) 333
SchI GAGTC 2 cut(s) 38, 77
ScrFI CCNGG 2 cut(s) 331, 337
SetI ASST 5 cut(s) 172, 229, 254, 289, 348
StyD4I CCNGG 2 cut(s) 329, 335
TaaI ACNGT 1 cut(s) 182
TaqI TCGA 1 cut(s) 27
TfiI GAWTC 1 cut(s) 203
TscAI CASTG 1 cut(s) 248
TseI GCWGC 2 cut(s) 167, 284
TspRI CASTG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.