Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000689.1

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

96138 .. 101393

Gene Structure 5256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000689.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atgaatacaaccaagagccaaattacacagaaagctgaagatcaaagagtcacctgtaagctgacggcgagaagaagattgggccatcggaatgttcataatggcgggaacggtgaggttccggagctgagaaatttccagtttgggactttgggcgagagagagagtgctttggtagccgtcggtggcgtcgctatagatatttgcgatggcatttttcagtcgcaaaatgcttgcgacggcaacgtcttgccgtcgctaataagcttgcgacgggctgctccaactgcgctgtcgaagagacatgctgatggttcattgccaattgaagatttcaacatagtacttgaaaatcagagtgggaagaaagcacaaatgggatcggagactgatcagcgggcaatcatgatgagcctgttgttacataccaatgcaaagcaactgattaaagcacaaaattacaaagatgtaatggaagtgctcagcatggaggagctggtcgataatccttctatactgcaaatcgatatggtttggtgttatttcatgcttagagacatcaactggctctcagtggcaagaattcgccttgagaaagccagagaaggtcttgaacaagctcatggaaaggactcttcttgtgttagactccttcaggcaggttgttatccagagcatgcactgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

228

Amino Acids

25.36

Weight (kDa)

7.0

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	650
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	2 cut(s)	105, 397
AclWI	GGATC	1 cut(s)	388
AcsI	RAATTY	2 cut(s)	133, 582
AcuI	CTGAAG	2 cut(s)	57, 638
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	1 cut(s)	345
AgsI	TTSAA	4 cut(s)	329, 337, 350, 614
AluBI	AGCT	6 cut(s)	35, 61, 127, 267, 496, 620
AluI	AGCT	6 cut(s)	35, 61, 127, 267, 496, 620
Alw21I	GWGCWC	1 cut(s)	483
Alw26I	GTCTC	3 cut(s)	295, 380, 549
AlwI	GGATC	1 cut(s)	388
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	278
ApoI	RAATTY	2 cut(s)	133, 582
AspLEI	GCGC	1 cut(s)	292
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	2 cut(s)	43, 125
Bbv12I	GWGCWC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	265
BccI	CCATC	3 cut(s)	93, 203, 305
BceAI	ACGGC	4 cut(s)	81, 164, 238, 256
BclI	TGATCA	1 cut(s)	391
BcoDI	GTCTC	3 cut(s)	295, 380, 549
BfmI	CTRYAG	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	650
BisI	GCNGC	1 cut(s)	279
BlpI	GCTNAGC	1 cut(s)	482
BlsI	GCNGC	1 cut(s)	280
BmcAI	AGTACT	1 cut(s)	345
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	120
Bpu1102I	GCTNAGC	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	611
Bsa29I	ATCGAT	1 cut(s)	525
BsaHI	GRCGYC	1 cut(s)	189
BsaWI	WCCGGW	1 cut(s)	121
Bse1I	ACTGG	2 cut(s)	139, 569
Bse3DI	GCAATG	1 cut(s)	317
BseAI	TCCGGA	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	525
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	3 cut(s)	119, 496, 585
BseNI	ACTGG	2 cut(s)	139, 569
BseRI	GAGGAG	1 cut(s)	506
BseXI	GCAGC	1 cut(s)	265
BshFI	GGCC	1 cut(s)	84
BshVI	ATCGAT	1 cut(s)	525
BsiHKAI	GWGCWC	1 cut(s)	483
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	160
BsmAI	GTCTC	3 cut(s)	295, 380, 549
BsmFI	GGGAC	1 cut(s)	160
BsnI	GGCC	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp13I	TCCGGA	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	40, 380, 391
Bsp1720I	GCTNAGC	1 cut(s)	482
BspACI	CCGC	2 cut(s)	105, 397
BspANI	GGCC	1 cut(s)	84
BspCNI	CTCAG	3 cut(s)	120, 495, 584
BspDI	ATCGAT	1 cut(s)	525
BspEI	TCCGGA	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	120
BspMI	ACCTGC	1 cut(s)	650
BspPI	GGATC	1 cut(s)	388
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	139, 569
BssMI	GATC	3 cut(s)	40, 380, 391
BssNI	GRCGYC	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	113, 684
Bst6I	CTCTTC	2 cut(s)	293, 640
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	4 cut(s)	235, 269, 399, 678
BstDEI	CTNAG	4 cut(s)	128, 482, 551, 571
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	3 cut(s)	43, 383, 394
BstMAI	GTCTC	3 cut(s)	295, 380, 549
BstMBI	GATC	3 cut(s)	40, 380, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 287
BstNSI	RCATGY	2 cut(s)	308, 680
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	265
Bsu15I	ATCGAT	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	84
BsuTUI	ATCGAT	1 cut(s)	525
BtgZI	GCGATG	1 cut(s)	222
BtsIMutI	CAGTG	2 cut(s)	579, 680
BveI	ACCTGC	1 cut(s)	650
Cac8I	GCNNGC	4 cut(s)	235, 269, 399, 678
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	1 cut(s)	292
Cfr13I	GGNCC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	525
CseI	GACGC	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	6 cut(s)	305, 406, 487, 547, 623, 677
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	4 cut(s)	128, 482, 551, 571
DpnI	GATC	3 cut(s)	42, 382, 393
DpnII	GATC	3 cut(s)	40, 380, 391
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	2 cut(s)	293, 640
EarI	CTCTTC	2 cut(s)	293, 640
Eco57I	CTGAAG	2 cut(s)	57, 638
EcoRI	GAATTC	1 cut(s)	582
FaeI	CATG	6 cut(s)	308, 409, 490, 550, 626, 680
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	6 cut(s)	304, 405, 486, 546, 622, 676
FauI	CCCGC	2 cut(s)	98, 390
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	1 cut(s)	279
Fsp4HI	GCNGC	1 cut(s)	279
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	84
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	178
HhaI	GCGC	1 cut(s)	292
Hin1I	GRCGYC	1 cut(s)	189
Hin1II	CATG	6 cut(s)	308, 409, 490, 550, 626, 680
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HindIII	AAGCTT	1 cut(s)	265
HinfI	GANTC	3 cut(s)	48, 632, 648
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	43, 125
Hpy188I	TCNGA	3 cut(s)	90, 357, 385
Hpy188III	TCNNGA	4 cut(s)	122, 406, 611, 671
Hpy99I	CGWCG	5 cut(s)	185, 194, 242, 259, 276
HpyAV	CCTTC	3 cut(s)	519, 599, 662
HpyCH4III	ACNGT	2 cut(s)	113, 684
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	3 cut(s)	434, 520, 680
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 287
HpyF3I	CTNAG	4 cut(s)	128, 482, 551, 571
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	189
Hsp92II	CATG	6 cut(s)	308, 409, 490, 550, 626, 680
HspAI	GCGC	1 cut(s)	290
Kpn2I	TCCGGA	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	40, 380, 391
LmnI	GCTCC	3 cut(s)	124, 286, 493
LpnPI	CCDG	9 cut(s)	67, 135, 152, 428, 482, 550, 613, 641, 645
Lsp1109I	GCAGC	1 cut(s)	265
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	49, 420
MalI	GATC	3 cut(s)	42, 382, 393
MboI	GATC	3 cut(s)	40, 380, 391
MboII	GAAGA	7 cut(s)	50, 84, 87, 310, 341, 376, 627
MfeI	CAATTG	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	5 cut(s)	21, 133, 324, 457, 582
MlyI	GAGTC	3 cut(s)	57, 626, 642
MmeI	TCCRAC	1 cut(s)	308
MnlI	CCTC	2 cut(s)	109, 484
MroI	TCCGGA	1 cut(s)	121
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	3 cut(s)	90, 309, 429
MspA1I	CMGCKG	1 cut(s)	397
MspI	CCGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	324
MwoI	GCNNNNNNNGC	2 cut(s)	176, 287
NdeII	GATC	3 cut(s)	40, 380, 391
NlaIII	CATG	6 cut(s)	308, 409, 490, 550, 626, 680
NlaIV	GGNNCC	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	2 cut(s)	308, 680
PaeI	GCATGC	1 cut(s)	680
PagI	TCATGA	1 cut(s)	405
PkrI	GCNGC	1 cut(s)	280
PleI	GAGTC	3 cut(s)	56, 626, 642
PpsI	GAGTC	3 cut(s)	56, 626, 642
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	1 cut(s)	82
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
RseI	CAYNNNNRTG	3 cut(s)	90, 309, 429
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	3 cut(s)	40, 380, 391
Sau96I	GGNCC	1 cut(s)	82
ScaI	AGTACT	1 cut(s)	345
SchI	GAGTC	3 cut(s)	57, 626, 642
SduI	GDGCHC	1 cut(s)	483
SfcI	CTRYAG	1 cut(s)	195
SmiMI	CAYNNNNRTG	3 cut(s)	90, 309, 429
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
SphI	GCATGC	1 cut(s)	680
Sse9I	AATT	5 cut(s)	21, 133, 324, 457, 582
SsiI	CCGC	2 cut(s)	105, 397
TaaI	ACNGT	2 cut(s)	113, 684
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	296, 501, 525
TasI	AATT	5 cut(s)	21, 133, 324, 457, 582
TatI	WGTACW	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	579, 687
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	278
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	4 cut(s)	17, 86, 306, 535
TspRI	CASTG	2 cut(s)	579, 687
XapI	RAATTY	2 cut(s)	133, 582
XceI	RCATGY	2 cut(s)	308, 680
ZrmI	AGTACT	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.