Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

21825301 .. 21837379

Gene Structure 12079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG140800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCTGATGGTTCATTGCCAATTGAAGATTTCAGTACTTGGAAATCAGAGTGGGAAGAAAGTACAAATGGGATCAAAGACTGATCAGCGGGCAATCATGATGAGCCTGATGTTACATACCAATGCAAAGCAACTGATTAAAGCACAAAATTACCAAGATGCAATGGAAGTGCTCAGCATGGAGGAGAAGGCTTTCTCTCTCTGCGATCCATCGGTTGTTAAGCTGGTCGATAATCCTTCTATACTGCAAATCGATATGGTTTGGTGTTATTTCATGTCTACTTACTTTGTTGATTCTCATTATAGATATTTGATACTGGAGCTGCTGGAAGGGGTGGCGGCGTATCACAGTTGTCAGGTTGATAAGTCAATGACGGTGTTGACTTCTGCACAAGAGAAGTTCACCCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCAACTGCTCTCGGGACAGGCACCAAACCCCACAGATGCTGCGAACCAATCTAAGGCAATTCCTGCAGTCAATGCTAACAACAATGGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGAATATGTGGACTTTCAAAAGCGACAACGCGGTGAAAGTGATCAACCACTCATTGCATTCCACAAAAGATCCAAATTTAGATGCTCACAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

219

Amino Acids

24.15

Weight (kDa)

6.13

Isoelectric Point (pI)

25.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	457
AccI	GTMKAC	1 cut(s)	278
AccII	CGCG	1 cut(s)	593
AciI	CCGC	3 cut(s)	88, 338, 593
AclWI	GGATC	3 cut(s)	79, 200, 626
AcsI	RAATTY	2 cut(s)	553, 637
AfaI	GTAC	2 cut(s)	36, 63
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	2 cut(s)	25, 580
AjnI	CCWGG	1 cut(s)	405
AluBI	AGCT	2 cut(s)	223, 322
AluI	AGCT	2 cut(s)	223, 322
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	3 cut(s)	79, 200, 626
AlwNI	CAGNNNCTG	1 cut(s)	476
Ama87I	CYCGRG	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	322, 476
ApoI	RAATTY	2 cut(s)	553, 637
Asp700I	GAANNNNTTC	1 cut(s)	191
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	2 cut(s)	394, 607
AvaI	CYCGRG	1 cut(s)	448
AvaII	GGWCC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	457
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	309, 463
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	407
BclI	TGATCA	2 cut(s)	82, 603
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	3 cut(s)	323, 339, 477
BlpI	GCTNAGC	1 cut(s)	173
BlsI	GCNGC	3 cut(s)	324, 340, 478
BmcAI	AGTACT	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	424
BmeT110I	CYCGRG	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	424
BmiI	GGNNCC	1 cut(s)	459
BmrFI	CCNGG	1 cut(s)	407
BmsI	GCATC	3 cut(s)	148, 463, 634
BpmI	CTGGAG	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	173
Bsa29I	ATCGAT	1 cut(s)	252
BsaJI	CCNNGG	2 cut(s)	405, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse1I	ACTGG	1 cut(s)	321
Bse3DI	GCAATG	4 cut(s)	13, 168, 546, 614
BseBI	CCWGG	1 cut(s)	407
BseCI	ATCGAT	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	405, 406
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseMI	GCAATG	4 cut(s)	13, 168, 546, 614
BseMII	CTCAG	1 cut(s)	187
BseNI	ACTGG	1 cut(s)	321
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	309, 463
BsgI	GTGCAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	593
BshNI	GGYRCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	252
BsiHKAI	GWGCWC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	448
BslFI	GGGAC	2 cut(s)	430, 465
BslI	CCNNNNNNNGG	1 cut(s)	490
BsmFI	GGGAC	2 cut(s)	430, 465
BsmI	GAATGC	1 cut(s)	619
BsoBI	CYCGRG	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	5 cut(s)	71, 82, 205, 603, 631
Bsp1720I	GCTNAGC	1 cut(s)	173
BspACI	CCGC	3 cut(s)	88, 338, 593
BspCNI	CTCAG	1 cut(s)	186
BspDI	ATCGAT	1 cut(s)	252
BspFNI	CGCG	1 cut(s)	593
BspHI	TCATGA	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	459
BspMAI	CTGCAG	1 cut(s)	505
BspPI	GGATC	3 cut(s)	79, 200, 626
BspT107I	GGYRCC	1 cut(s)	457
BsrDI	GCAATG	4 cut(s)	13, 168, 546, 614
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	2 cut(s)	405, 406
BssMI	GATC	5 cut(s)	71, 82, 205, 603, 631
Bst2UI	CCWGG	1 cut(s)	407
Bst4CI	ACNGT	2 cut(s)	350, 376
BstAPI	GCANNNNNTGC	2 cut(s)	500, 509
BstC8I	GCNNGC	1 cut(s)	90
BstDEI	CTNAG	2 cut(s)	173, 489
BstFNI	CGCG	1 cut(s)	593
BstKTI	GATC	5 cut(s)	74, 85, 208, 606, 634
BstMBI	GATC	5 cut(s)	71, 82, 205, 603, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 509
BstNI	CCWGG	1 cut(s)	407
BstSCI	CCNGG	1 cut(s)	405
BstSFI	CTRYAG	1 cut(s)	501
BstUI	CGCG	1 cut(s)	593
BstV1I	GCAGC	2 cut(s)	309, 463
BstX2I	RGATCY	1 cut(s)	631
BstYI	RGATCY	1 cut(s)	631
Bsu15I	ATCGAT	1 cut(s)	252
BsuTUI	ATCGAT	1 cut(s)	252
Cac8I	GCNNGC	1 cut(s)	90
CaiI	CAGNNNCTG	1 cut(s)	476
CciI	TCATGA	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	424
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	35, 62
CviAII	CATG	3 cut(s)	97, 178, 274
CviJI	RGCY	4 cut(s)	105, 191, 223, 322
CviKI_1	RGCY	4 cut(s)	105, 191, 223, 322
CviQI	GTAC	2 cut(s)	35, 62
DdeI	CTNAG	2 cut(s)	173, 489
DpnI	GATC	5 cut(s)	73, 84, 207, 605, 633
DpnII	GATC	5 cut(s)	71, 82, 205, 603, 631
Eco47I	GGWCC	1 cut(s)	424
Eco88I	CYCGRG	1 cut(s)	448
EcoRII	CCWGG	1 cut(s)	405
FaeI	CATG	3 cut(s)	100, 181, 277
FaiI	YATR	9 cut(s)	98, 117, 179, 242, 257, 275, 303, 569, 658
FaqI	GGGAC	2 cut(s)	430, 465
FatI	CATG	3 cut(s)	96, 177, 273
FauI	CCCGC	1 cut(s)	81
FbaI	TGATCA	2 cut(s)	82, 603
FblI	GTMKAC	1 cut(s)	278
Fnu4HI	GCNGC	3 cut(s)	323, 339, 477
Fsp4HI	GCNGC	3 cut(s)	323, 339, 477
GluI	GCNGC	3 cut(s)	323, 339, 477
GsuI	CTGGAG	1 cut(s)	338
Hin1II	CATG	3 cut(s)	100, 181, 277
HincII	GTYRAC	2 cut(s)	381, 440
HindII	GTYRAC	2 cut(s)	381, 440
HinfI	GANTC	1 cut(s)	293
HphI	GGTGA	2 cut(s)	394, 607
Hpy166II	GTNNAC	5 cut(s)	279, 381, 402, 440, 573
Hpy188I	TCNGA	2 cut(s)	48, 532
Hpy188III	TCNNGA	2 cut(s)	97, 450
Hpy8I	GTNNAC	5 cut(s)	279, 381, 402, 440, 573
HpyAV	CCTTC	3 cut(s)	181, 246, 323
HpyCH4III	ACNGT	2 cut(s)	350, 376
HpyCH4V	TGCA	8 cut(s)	125, 161, 247, 389, 503, 539, 551, 619
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 509
HpyF3I	CTNAG	2 cut(s)	173, 489
Hsp92II	CATG	3 cut(s)	100, 181, 277
Ksp22I	TGATCA	2 cut(s)	82, 603
Kzo9I	GATC	5 cut(s)	71, 82, 205, 603, 631
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	9 cut(s)	119, 209, 302, 311, 341, 392, 419, 440, 513
Lsp1109I	GCAGC	2 cut(s)	309, 463
LweI	GCATC	3 cut(s)	148, 463, 634
MaeIII	GTNAC	1 cut(s)	111
MalI	GATC	5 cut(s)	73, 84, 207, 605, 633
MboI	GATC	5 cut(s)	71, 82, 205, 603, 631
MboII	GAAGA	2 cut(s)	37, 67
MfeI	CAATTG	2 cut(s)	20, 540
MflI	RGATCY	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	6 cut(s)	20, 148, 495, 540, 553, 637
MnlI	CCTC	2 cut(s)	175, 407
MroXI	GAANNNNTTC	1 cut(s)	191
MseI	TTAA	2 cut(s)	138, 219
MslI	CAYNNNNRTG	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	88
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	2 cut(s)	20, 540
Mva1269I	GAATGC	1 cut(s)	619
MvaI	CCWGG	1 cut(s)	407
MvnI	CGCG	1 cut(s)	593
MwoI	GCNNNNNNNGC	2 cut(s)	500, 509
NdeII	GATC	5 cut(s)	71, 82, 205, 603, 631
NlaIII	CATG	3 cut(s)	100, 181, 277
NlaIV	GGNNCC	1 cut(s)	459
PagI	TCATGA	1 cut(s)	96
PasI	CCCWGGG	1 cut(s)	406
PctI	GAATGC	1 cut(s)	619
PdmI	GAANNNNTTC	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	324, 340, 478
Psp6I	CCWGG	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	405
PspN4I	GGNNCC	1 cut(s)	459
PspPI	GGNCC	1 cut(s)	424
PstI	CTGCAG	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	476
PsuI	RGATCY	1 cut(s)	631
RsaI	GTAC	2 cut(s)	36, 63
RsaNI	GTAC	2 cut(s)	35, 62
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	2 cut(s)	138, 219
SatI	GCNGC	3 cut(s)	323, 339, 477
Sau3AI	GATC	5 cut(s)	71, 82, 205, 603, 631
Sau96I	GGNCC	1 cut(s)	424
ScaI	AGTACT	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	407
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	3 cut(s)	225, 324, 360
SfaNI	GCATC	3 cut(s)	148, 463, 634
SfcI	CTRYAG	1 cut(s)	501
SinI	GGWCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	120
Sse9I	AATT	6 cut(s)	20, 148, 495, 540, 553, 637
SsiI	CCGC	3 cut(s)	88, 338, 593
StyD4I	CCNGG	1 cut(s)	405
TaaI	ACNGT	2 cut(s)	350, 376
TaqI	TCGA	2 cut(s)	228, 252
TasI	AATT	6 cut(s)	20, 148, 495, 540, 553, 637
TatI	WGTACW	2 cut(s)	34, 61
TauI	GCSGC	1 cut(s)	341
TfiI	GAWTC	1 cut(s)	293
Tru1I	TTAA	2 cut(s)	138, 219
Tru9I	TTAA	2 cut(s)	138, 219
TseI	GCWGC	2 cut(s)	322, 476
TspDTI	ATGAA	1 cut(s)	262
VpaK11BI	GGWCC	1 cut(s)	424
XapI	RAATTY	2 cut(s)	553, 637
XmiI	GTMKAC	1 cut(s)	278
XmnI	GAANNNNTTC	1 cut(s)	191
ZrmI	AGTACT	1 cut(s)	36

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.