Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

75399492 .. 75400372

Gene Structure 881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG474300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGGATTGGAGACTGATCAGCGGGCAGTCATGATCGGCCCGATGCTTCATACTAATGCAAAGCAACTGATTAAAGCACAAAATTACCAAGATGCATTGGAAGTGCTCAGCATGGGGGAGGTTCGAACTGGAGGCTTTTTCTCTCTGCGATCAAAAGTTATTGAGCTAGTCGACAATCCTTCTATACTGCAAATCGTTATGGTTTGGTGTTATTTCATGCTTAGAGTCATCAACTGTCTCTCAGTGGCAGGAATTCGCCTTGAGAAAGCCAGAGAAGGTCTTGAACGAGCTCATGGAAAGGACTCTTCTCGTGTTAAGACTACTTCAGGCAGATATTTGAGACTGGAGCTGCTGGAAGGGTGGTGGCGTATCACAGTGGTCAGGTTGATAAGTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

132

Amino Acids

15.05

Weight (kDa)

9.56

Isoelectric Point (pI)

28.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AciI	CCGC	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	284
AluBI	AGCT	3 cut(s)	166, 290, 349
AluI	AGCT	3 cut(s)	166, 290, 349
Alw21I	GWGCWC	2 cut(s)	108, 292
Alw26I	GTCTC	3 cut(s)	5, 242, 334
AoxI	GGCC	1 cut(s)	37
ApeKI	GCWGC	1 cut(s)	349
ApoI	RAATTY	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	38
AsuII	TTCGAA	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	309
Bbv12I	GWGCWC	2 cut(s)	108, 292
BbvI	GCAGC	1 cut(s)	336
BclI	TGATCA	1 cut(s)	16
BcoDI	GTCTC	3 cut(s)	5, 242, 334
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	1 cut(s)	350
BlpI	GCTNAGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	38
BmsI	GCATC	2 cut(s)	33, 82
BpmI	CTGGAG	2 cut(s)	150, 365
Bpu1102I	GCTNAGC	1 cut(s)	107
Bpu14I	TTCGAA	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	133, 348
BseMII	CTCAG	2 cut(s)	121, 255
BseNI	ACTGG	2 cut(s)	133, 348
BseXI	GCAGC	1 cut(s)	336
BshFI	GGCC	1 cut(s)	39
BsiHKAI	GWGCWC	2 cut(s)	108, 292
BsmAI	GTCTC	3 cut(s)	5, 242, 334
BsnI	GGCC	1 cut(s)	39
Bsp119I	TTCGAA	1 cut(s)	124
Bsp1286I	GDGCHC	2 cut(s)	108, 292
Bsp143I	GATC	3 cut(s)	16, 33, 149
Bsp1720I	GCTNAGC	1 cut(s)	107
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	1 cut(s)	39
BspCNI	CTCAG	2 cut(s)	120, 254
BspHI	TCATGA	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	133, 348
BssMI	GATC	3 cut(s)	16, 33, 149
BssSI	CACGAG	1 cut(s)	309
Bst2BI	CACGAG	1 cut(s)	309
Bst4CI	ACNGT	2 cut(s)	236, 376
Bst6I	CTCTTC	1 cut(s)	310
BstBI	TTCGAA	1 cut(s)	124
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	3 cut(s)	107, 221, 241
BstKTI	GATC	3 cut(s)	19, 36, 152
BstMAI	GTCTC	3 cut(s)	5, 242, 334
BstMBI	GATC	3 cut(s)	16, 33, 149
BstV1I	GCAGC	1 cut(s)	336
BsuRI	GGCC	1 cut(s)	39
BtsIMutI	CAGTG	2 cut(s)	249, 381
Cac8I	GCNNGC	1 cut(s)	24
CciI	TCATGA	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	38
CviAII	CATG	4 cut(s)	31, 112, 217, 293
CviJI	RGCY	6 cut(s)	39, 135, 166, 269, 290, 349
CviKI_1	RGCY	6 cut(s)	39, 135, 166, 269, 290, 349
DdeI	CTNAG	3 cut(s)	107, 221, 241
DpnI	GATC	3 cut(s)	18, 35, 151
DpnII	GATC	3 cut(s)	16, 33, 149
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	309
EcoICRI	GAGCTC	1 cut(s)	290
EcoRI	GAATTC	1 cut(s)	252
EcoT22I	ATGCAT	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	4 cut(s)	34, 115, 220, 296
FaiI	YATR	7 cut(s)	32, 51, 113, 185, 200, 218, 294
FatI	CATG	4 cut(s)	30, 111, 216, 292
FauI	CCCGC	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	350
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	350
FspBI	CTAG	1 cut(s)	167
GluI	GCNGC	1 cut(s)	350
GsuI	CTGGAG	2 cut(s)	150, 365
HaeIII	GGCC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	34, 115, 220, 296
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	2 cut(s)	225, 302
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188III	TCNNGA	2 cut(s)	31, 281
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	3 cut(s)	189, 269, 350
HpyCH4III	ACNGT	2 cut(s)	236, 376
HpyCH4V	TGCA	3 cut(s)	59, 95, 190
HpyF3I	CTNAG	3 cut(s)	107, 221, 241
Hsp92II	CATG	4 cut(s)	34, 115, 220, 296
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	3 cut(s)	16, 33, 149
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	7 cut(s)	114, 234, 283, 312, 329, 338, 367
Lsp1109I	GCAGC	1 cut(s)	336
LweI	GCATC	2 cut(s)	33, 82
MaeI	CTAG	1 cut(s)	167
MalI	GATC	3 cut(s)	18, 35, 151
MboI	GATC	3 cut(s)	16, 33, 149
MboII	GAAGA	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	108, 292
MluCI	AATT	2 cut(s)	82, 252
MlyI	GAGTC	2 cut(s)	234, 296
MnlI	CCTC	2 cut(s)	112, 125
Mph1103I	ATGCAT	1 cut(s)	97
MseI	TTAA	2 cut(s)	72, 315
MslI	CAYNNNNRTG	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	22
NdeII	GATC	3 cut(s)	16, 33, 149
NlaIII	CATG	4 cut(s)	34, 115, 220, 296
NsiI	ATGCAT	1 cut(s)	97
NspV	TTCGAA	1 cut(s)	124
PagI	TCATGA	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	351
PleI	GAGTC	2 cut(s)	233, 296
PpsI	GAGTC	2 cut(s)	233, 296
Psp124BI	GAGCTC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	292
SalI	GTCGAC	1 cut(s)	170
SaqAI	TTAA	2 cut(s)	72, 315
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	3 cut(s)	16, 33, 149
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	234, 296
SduI	GDGCHC	2 cut(s)	108, 292
SetI	ASST	6 cut(s)	123, 168, 280, 292, 351, 386
SfaNI	GCATC	2 cut(s)	33, 82
SfuI	TTCGAA	1 cut(s)	124
SmiMI	CAYNNNNRTG	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	82, 252
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	292
TaaI	ACNGT	2 cut(s)	236, 376
TaqI	TCGA	2 cut(s)	124, 171
TasI	AATT	2 cut(s)	82, 252
Tru1I	TTAA	2 cut(s)	72, 315
Tru9I	TTAA	2 cut(s)	72, 315
TscAI	CASTG	2 cut(s)	249, 381
TseI	GCWGC	1 cut(s)	349
TspDTI	ATGAA	2 cut(s)	38, 205
TspRI	CASTG	2 cut(s)	249, 381
XapI	RAATTY	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	1 cut(s)	167
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.