Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

17661083 .. 17662708

Gene Structure 1626 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG198900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGTTGTCTGCAGTGAATCAAAACAATTGTAGACCAAGAGACGCCGTCAGGGCTGCTGCAACTGTGCTGTCGAAGAGACATGCTGATGGTTCCTTGCCAATTGAAGATTTCCACATAGTACTTGAAGATCAGAGTGGCAAGAAAGTACAAATGGGATCGGAGACTGATAAGCTGGCAATCATGATGGGCCTGATGCTTCATACCAATCCAAAGCAACTGATTAAAGCACAAAATTACCGAGATGCATTGGAAATGCTCAGCATGGAGAAGGAGGCTTTATCTCTATGCAATGATTGCAATCCAAAGGTTATTGAGTGCTTGATAATCAAAATGGTCAAGTTGGAGGTCCTTCAACATCTAGTAATGCATCAGAGCGTGATGCAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

130

Amino Acids

14.64

Weight (kDa)

6.5

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	34
AclWI	GGATC	1 cut(s)	166
AcyI	GRCGYC	1 cut(s)	45
AfaI	GTAC	2 cut(s)	123, 150
AgsI	TTSAA	3 cut(s)	107, 128, 356
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	3 cut(s)	36, 73, 158
AlwI	GGATC	1 cut(s)	166
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	56, 59
AspS9I	GGNCC	2 cut(s)	190, 349
AvaII	GGWCC	1 cut(s)	349
BbvI	GCAGC	2 cut(s)	43, 46
BccI	CCATC	2 cut(s)	83, 181
BceAI	ACGGC	1 cut(s)	32
BcoDI	GTCTC	3 cut(s)	36, 73, 158
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	1 cut(s)	12
BglI	GCCNNNNNGGC	1 cut(s)	53
BisI	GCNGC	2 cut(s)	57, 60
BlpI	GCTNAGC	1 cut(s)	260
BlsI	GCNGC	2 cut(s)	58, 61
BmcAI	AGTACT	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	190, 349
BmiI	GGNNCC	1 cut(s)	94
BmsI	GCATC	4 cut(s)	186, 235, 372, 379
Bpu1102I	GCTNAGC	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	45
Bse3DI	GCAATG	1 cut(s)	298
Bse8I	GATNNNNATC	1 cut(s)	300
BseJI	GATNNNNATC	1 cut(s)	300
BseMI	GCAATG	1 cut(s)	298
BseMII	CTCAG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	43, 46
BshFI	GGCC	1 cut(s)	192
BsmAI	GTCTC	3 cut(s)	36, 73, 158
BsmBI	CGTCTC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	130, 158
Bsp1720I	GCTNAGC	1 cut(s)	260
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	273
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	94
BspMAI	CTGCAG	1 cut(s)	16
BspPI	GGATC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	298
BssMI	GATC	2 cut(s)	130, 158
BssNI	GRCGYC	1 cut(s)	45
Bst4CI	ACNGT	1 cut(s)	67
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	45
BstAPI	GCANNNNNTGC	1 cut(s)	297
BstC8I	GCNNGC	1 cut(s)	177
BstDEI	CTNAG	1 cut(s)	260
BstKTI	GATC	2 cut(s)	133, 161
BstMAI	GTCTC	3 cut(s)	36, 73, 158
BstMBI	GATC	2 cut(s)	130, 158
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 297
BstNSI	RCATGY	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	43, 46
BsuRI	GGCC	1 cut(s)	192
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	177
CciI	TCATGA	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	190, 349
CseI	GACGC	1 cut(s)	53
Csp6I	GTAC	2 cut(s)	122, 149
CviAII	CATG	3 cut(s)	83, 184, 265
CviJI	RGCY	4 cut(s)	56, 175, 192, 278
CviKI_1	RGCY	4 cut(s)	56, 175, 192, 278
CviQI	GTAC	2 cut(s)	122, 149
DdeI	CTNAG	1 cut(s)	260
DpnI	GATC	2 cut(s)	132, 160
DpnII	GATC	2 cut(s)	130, 158
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	349
EcoO109I	RGGNCCY	1 cut(s)	349
EcoT22I	ATGCAT	2 cut(s)	250, 372
Esp3I	CGTCTC	1 cut(s)	36
FaeI	CATG	3 cut(s)	86, 187, 268
FaiI	YATR	6 cut(s)	84, 119, 185, 204, 266, 289
FatI	CATG	3 cut(s)	82, 183, 264
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	2 cut(s)	57, 60
Fsp4HI	GCNGC	2 cut(s)	57, 60
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	2 cut(s)	57, 60
HaeIII	GGCC	1 cut(s)	192
HgaI	GACGC	1 cut(s)	53
Hin1I	GRCGYC	1 cut(s)	45
Hin1II	CATG	3 cut(s)	86, 187, 268
HinfI	GANTC	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	3 cut(s)	135, 163, 375
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	1 cut(s)	35
HpyAV	CCTTC	2 cut(s)	265, 362
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4V	TGCA	7 cut(s)	14, 62, 248, 291, 300, 370, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 297
HpyF3I	CTNAG	1 cut(s)	260
Hsp92I	GRCGYC	1 cut(s)	45
Hsp92II	CATG	3 cut(s)	86, 187, 268
Kzo9I	GATC	2 cut(s)	130, 158
LpnPI	CCDG	3 cut(s)	37, 161, 206
Lsp1109I	GCAGC	2 cut(s)	43, 46
LweI	GCATC	4 cut(s)	186, 235, 372, 379
MaeI	CTAG	1 cut(s)	362
MalI	GATC	2 cut(s)	132, 160
MboI	GATC	2 cut(s)	130, 158
MboII	GAAGA	3 cut(s)	88, 119, 140
MfeI	CAATTG	2 cut(s)	28, 102
MluCI	AATT	3 cut(s)	28, 102, 235
MmeI	TCCRAC	1 cut(s)	324
MnlI	CCTC	2 cut(s)	268, 340
Mph1103I	ATGCAT	2 cut(s)	250, 372
MseI	TTAA	1 cut(s)	225
MslI	CAYNNNNRTG	1 cut(s)	87
MunI	CAATTG	2 cut(s)	28, 102
MwoI	GCNNNNNNNGC	2 cut(s)	53, 297
NdeII	GATC	2 cut(s)	130, 158
NlaIII	CATG	3 cut(s)	86, 187, 268
NlaIV	GGNNCC	1 cut(s)	94
NsiI	ATGCAT	2 cut(s)	250, 372
NspI	RCATGY	1 cut(s)	86
PagI	TCATGA	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	19
PflFI	GACNNNGTC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	58, 61
PpuMI	RGGWCCY	1 cut(s)	349
Psp5II	RGGWCCY	1 cut(s)	349
PspN4I	GGNNCC	1 cut(s)	94
PspPI	GGNCC	2 cut(s)	190, 349
PspPPI	RGGWCCY	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	16
PsyI	GACNNNGTC	1 cut(s)	47
RsaI	GTAC	2 cut(s)	123, 150
RsaNI	GTAC	2 cut(s)	122, 149
RseI	CAYNNNNRTG	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	225
SatI	GCNGC	2 cut(s)	57, 60
Sau3AI	GATC	2 cut(s)	130, 158
Sau96I	GGNCC	2 cut(s)	190, 349
ScaI	AGTACT	1 cut(s)	123
SetI	ASST	3 cut(s)	177, 312, 351
SfaNI	GCATC	4 cut(s)	186, 235, 372, 379
SfcI	CTRYAG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	3 cut(s)	28, 102, 235
SspMI	CTAG	1 cut(s)	362
TaaI	ACNGT	1 cut(s)	67
TaqI	TCGA	1 cut(s)	74
TasI	AATT	3 cut(s)	28, 102, 235
TatI	WGTACW	2 cut(s)	121, 148
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	21
TseI	GCWGC	2 cut(s)	56, 59
TspDTI	ATGAA	1 cut(s)	191
TspRI	CASTG	1 cut(s)	21
Tth111I	GACNNNGTC	1 cut(s)	47
VpaK11BI	GGWCC	1 cut(s)	349
XceI	RCATGY	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	34
XspI	CTAG	1 cut(s)	362
ZrmI	AGTACT	1 cut(s)	123
Zsp2I	ATGCAT	2 cut(s)	250, 372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.