Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003241.1

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2926

Gene Structure 2926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003241.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1387 bp

ggctgctccaactgtgatgtcgaagagacatgctgatggttcattgccaattgaagatttcaacatagtacttgaaaatcagagtgggaagaaagtacaaatgggatcggagactgatcagcgggcaatcatgatgagcctgatgttacataccaatgcaaagcaactgattaaagcacaaaattacaaagatgcaatggaagtgctcagcatggaggagctggtcgataatccttctatactgcaaatcgatatggtttggtgttattccatgcttagagacatcaactggttctcagtggcaagaattcaccttgagaaagccagagaaggtcttgaacgagctcatggaaaggactctccttgtgttagactccttcaggcaggttgttatccagatgcctcaaaggtcttgaacgagctcatggaaaggactctccttgtgttagactccttcaggcaggttgttatccagatgcctcaaaggttgttatccagatgcctcaaaggtcttgaacgagctcatggaaaggactctccttgtgttagactccttcaggcaggttgttatccagatgcctcaaaggtcttgaacgagctcatggaaaggactcttcttgtacatgttagactccttcaggcaggttgttatccagagcgggtggcggcgtatcaccgtggtcaggttgataagtcaatgaaggtgttgacttatgtacaagagttgttcacccagcttcaggtgctggatgaatctctctcttgtgatgattatgggcttcagagaacgagatacaaaaagggcactgaggatgagcaatcaagattccatcagccctgtatagtcgttagtttgaaaaggagcttgccgctgaagcactatgaggaaatgacagtggagaaggcattgggtttgacaaatccaaagaccaattcttccatgcagcaacatcttgaatcgaggaaaagtaaactacagtgccaagcagtagatgcttcagttgaagcttttgtacgcatggcctttgacagatcattagtcttagctttgcagggtggagggacaatggaccaagcaatctgtccactgctctcgggacaggcaccaaaccccacagatgctgctaaccaatctgaggcaattcctgcagcagcagtagatgcttcagttgaagcttttgtacgcatggcctttgacagatcattagtcttagctttgcagggtggagggacaatggaccaagcaatctgtccactgctctcgggacaggcaccaaaccccacagatgctgctaaccaatctgaggcaattcctgcagtcaatgctaacaacaatagtcaatccgatgttgcaattgacattgcaaattctcctgtcaatgcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

461

Amino Acids

50.9

Weight (kDa)

5.99

Isoelectric Point (pI)

44.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	4 cut(s)	375, 452, 552, 633
AccB1I	GGYRCC	2 cut(s)	1103, 1271
AccBSI	CCGCTC	1 cut(s)	659
AciI	CCGC	4 cut(s)	122, 659, 666, 870
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	307, 1367
AcuI	CTGAAG	9 cut(s)	363, 440, 540, 621, 723, 765, 894, 982, 1150
AfaI	GTAC	6 cut(s)	70, 97, 622, 718, 1015, 1183
AfiI	CCNNNNNNNGG	4 cut(s)	683, 740, 1136, 1304
AflIII	ACRYGT	1 cut(s)	623
AjuI	GAANNNNNNNTTGG	2 cut(s)	917, 949
Alw21I	GWGCWC	5 cut(s)	208, 347, 424, 524, 601
Alw26I	GTCTC	3 cut(s)	20, 105, 274
AlwI	GGATC	1 cut(s)	113
AlwNI	CAGNNNCTG	3 cut(s)	746, 1122, 1290
Ama87I	CYCGRG	2 cut(s)	1094, 1262
AoxI	GGCC	2 cut(s)	1021, 1189
ApeKI	GCWGC	6 cut(s)	3, 944, 1122, 1149, 1152, 1290
ApoI	RAATTY	2 cut(s)	307, 1367
AspS9I	GGNCC	2 cut(s)	1070, 1238
AsuHPI	GGTGA	3 cut(s)	303, 666, 722
AvaI	CYCGRG	2 cut(s)	1094, 1262
AvaII	GGWCC	2 cut(s)	1070, 1238
BaeGI	GKGCMC	1 cut(s)	807
BanI	GGYRCC	2 cut(s)	1103, 1271
BanII	GRGCYC	4 cut(s)	347, 424, 524, 601
BarI	GAAGNNNNNNTAC	4 cut(s)	997, 1029, 1165, 1197
Bbv12I	GWGCWC	5 cut(s)	208, 347, 424, 524, 601
BbvI	GCAGC	5 cut(s)	956, 1109, 1161, 1164, 1277
BccI	CCATC	2 cut(s)	30, 838
BclI	TGATCA	1 cut(s)	116
BcoDI	GTCTC	3 cut(s)	20, 105, 274
BfmI	CTRYAG	3 cut(s)	975, 1147, 1315
BfuAI	ACCTGC	4 cut(s)	375, 452, 552, 633
BisI	GCNGC	8 cut(s)	4, 667, 870, 945, 1123, 1150, 1153, 1291
BlpI	GCTNAGC	1 cut(s)	207
BlsI	GCNGC	8 cut(s)	5, 668, 871, 946, 1124, 1151, 1154, 1292
BmcAI	AGTACT	1 cut(s)	70
Bme18I	GGWCC	2 cut(s)	1070, 1238
BmeT110I	CYCGRG	2 cut(s)	1094, 1262
BmgT120I	GGNCC	2 cut(s)	1070, 1238
BmiI	GGNNCC	2 cut(s)	1105, 1273
BmsI	GCATC	9 cut(s)	182, 389, 466, 489, 566, 983, 1109, 1151, 1277
Bpu1102I	GCTNAGC	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	336
Bsa29I	ATCGAT	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	677
Bsc4I	CCNNNNNNNGG	4 cut(s)	683, 740, 1136, 1304
Bse1I	ACTGG	1 cut(s)	294
Bse3DI	GCAATG	3 cut(s)	42, 202, 1360
BseCI	ATCGAT	1 cut(s)	250
BseDI	CCNNGG	1 cut(s)	677
BseGI	GGATG	2 cut(s)	755, 818
BseLI	CCNNNNNNNGG	4 cut(s)	683, 740, 1136, 1304
BseMI	GCAATG	3 cut(s)	42, 202, 1360
BseMII	CTCAG	5 cut(s)	221, 310, 799, 1126, 1294
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	807
BseXI	GCAGC	5 cut(s)	956, 1109, 1161, 1164, 1277
BseYI	CCCAGC	1 cut(s)	733
BshFI	GGCC	2 cut(s)	1023, 1191
BshNI	GGYRCC	2 cut(s)	1103, 1271
BshVI	ATCGAT	1 cut(s)	250
BsiHKAI	GWGCWC	5 cut(s)	208, 347, 424, 524, 601
BsiHKCI	CYCGRG	2 cut(s)	1094, 1262
BslFI	GGGAC	4 cut(s)	1076, 1111, 1244, 1279
BslI	CCNNNNNNNGG	4 cut(s)	683, 740, 1136, 1304
BsmAI	GTCTC	3 cut(s)	20, 105, 274
BsmFI	GGGAC	4 cut(s)	1076, 1111, 1244, 1279
BsnI	GGCC	2 cut(s)	1023, 1191
BsoBI	CYCGRG	2 cut(s)	1094, 1262
Bsp1286I	GDGCHC	6 cut(s)	208, 347, 424, 524, 601, 807
Bsp1407I	TGTACA	2 cut(s)	620, 716
Bsp143I	GATC	4 cut(s)	105, 116, 1032, 1200
Bsp1720I	GCTNAGC	1 cut(s)	207
BspACI	CCGC	4 cut(s)	122, 659, 666, 870
BspANI	GGCC	2 cut(s)	1023, 1191
BspCNI	CTCAG	5 cut(s)	220, 309, 800, 1127, 1295
BspDI	ATCGAT	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	1105, 1273
BspMAI	CTGCAG	2 cut(s)	1151, 1319
BspMI	ACCTGC	4 cut(s)	375, 452, 552, 633
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	2 cut(s)	1103, 1271
BsrBI	CCGCTC	1 cut(s)	659
BsrDI	GCAATG	3 cut(s)	42, 202, 1360
BsrGI	TGTACA	2 cut(s)	620, 716
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	677
BssMI	GATC	4 cut(s)	105, 116, 1032, 1200
Bst4CI	ACNGT	4 cut(s)	14, 678, 896, 979
Bst6I	CTCTTC	2 cut(s)	18, 619
BstAPI	GCANNNNNTGC	5 cut(s)	993, 1146, 1161, 1314, 1323
BstAUI	TGTACA	2 cut(s)	620, 716
BstC8I	GCNNGC	2 cut(s)	124, 867
BstDEI	CTNAG	8 cut(s)	207, 276, 296, 808, 1043, 1135, 1211, 1303
BstDSI	CCRYGG	1 cut(s)	677
BstF5I	GGATG	2 cut(s)	755, 818
BstKTI	GATC	4 cut(s)	108, 119, 1035, 1203
BstMAI	GTCTC	3 cut(s)	20, 105, 274
BstMBI	GATC	4 cut(s)	105, 116, 1032, 1200
BstMWI	GCNNNNNNNGC	7 cut(s)	743, 875, 993, 1146, 1161, 1314, 1323
BstNSI	RCATGY	2 cut(s)	33, 627
BstSFI	CTRYAG	3 cut(s)	975, 1147, 1315
BstSLI	GKGCMC	1 cut(s)	807
BstV1I	GCAGC	5 cut(s)	956, 1109, 1161, 1164, 1277
Bsu15I	ATCGAT	1 cut(s)	250
BsuRI	GGCC	2 cut(s)	1023, 1191
BsuTUI	ATCGAT	1 cut(s)	250
BtgI	CCRYGG	1 cut(s)	677
BtsCI	GGATG	2 cut(s)	755, 818
BtsI	GCAGTG	2 cut(s)	1086, 1254
BtsIMutI	CAGTG	6 cut(s)	304, 805, 901, 984, 1086, 1254
BveI	ACCTGC	4 cut(s)	375, 452, 552, 633
Cac8I	GCNNGC	2 cut(s)	124, 867
CaiI	CAGNNNCTG	3 cut(s)	746, 1122, 1290
CciI	TCATGA	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	1070, 1238
ClaI	ATCGAT	1 cut(s)	250
Csp6I	GTAC	6 cut(s)	69, 96, 621, 717, 1014, 1182
CviQI	GTAC	6 cut(s)	69, 96, 621, 717, 1014, 1182
DdeI	CTNAG	8 cut(s)	207, 276, 296, 808, 1043, 1135, 1211, 1303
DpnI	GATC	4 cut(s)	107, 118, 1034, 1202
DpnII	GATC	4 cut(s)	105, 116, 1032, 1200
Eam1104I	CTCTTC	2 cut(s)	18, 619
EarI	CTCTTC	2 cut(s)	18, 619
Ecl136II	GAGCTC	4 cut(s)	345, 422, 522, 599
Eco24I	GRGCYC	4 cut(s)	347, 424, 524, 601
Eco47I	GGWCC	2 cut(s)	1070, 1238
Eco53kI	GAGCTC	4 cut(s)	345, 422, 522, 599
Eco57I	CTGAAG	9 cut(s)	363, 440, 540, 621, 723, 765, 894, 982, 1150
Eco88I	CYCGRG	2 cut(s)	1094, 1262
EcoICRI	GAGCTC	4 cut(s)	345, 422, 522, 599
EcoRI	GAATTC	1 cut(s)	307
EcoT38I	GRGCYC	4 cut(s)	347, 424, 524, 601
FaqI	GGGAC	4 cut(s)	1076, 1111, 1244, 1279
FauI	CCCGC	2 cut(s)	115, 652
FbaI	TGATCA	1 cut(s)	116
Fnu4HI	GCNGC	8 cut(s)	4, 667, 870, 945, 1123, 1150, 1153, 1291
FokI	GGATG	2 cut(s)	762, 825
FriOI	GRGCYC	4 cut(s)	347, 424, 524, 601
Fsp4HI	GCNGC	8 cut(s)	4, 667, 870, 945, 1123, 1150, 1153, 1291
GluI	GCNGC	8 cut(s)	4, 667, 870, 945, 1123, 1150, 1153, 1291
GsaI	CCCAGC	1 cut(s)	737
HaeIII	GGCC	2 cut(s)	1023, 1191
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HindIII	AAGCTT	2 cut(s)	1006, 1174
HphI	GGTGA	3 cut(s)	303, 666, 722
Hpy166II	GTNNAC	5 cut(s)	709, 730, 972, 1086, 1254
Hpy188I	TCNGA	6 cut(s)	82, 110, 784, 1136, 1304, 1346
Hpy8I	GTNNAC	5 cut(s)	709, 730, 972, 1086, 1254
HpyAV	CCTTC	8 cut(s)	244, 324, 387, 464, 564, 645, 695, 896
HpyCH4III	ACNGT	4 cut(s)	14, 678, 896, 979
HpyF10VI	GCNNNNNNNGC	7 cut(s)	743, 875, 993, 1146, 1161, 1314, 1323
HpyF3I	CTNAG	8 cut(s)	207, 276, 296, 808, 1043, 1135, 1211, 1303
Ksp22I	TGATCA	1 cut(s)	116
Kzo9I	GATC	4 cut(s)	105, 116, 1032, 1200
LmnI	GCTCC	3 cut(s)	11, 218, 862
Lsp1109I	GCAGC	5 cut(s)	956, 1109, 1161, 1164, 1277
LweI	GCATC	9 cut(s)	182, 389, 466, 489, 566, 983, 1109, 1151, 1277
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	4 cut(s)	107, 118, 1034, 1202
MbiI	CCGCTC	1 cut(s)	659
MboI	GATC	4 cut(s)	105, 116, 1032, 1200
MboII	GAAGA	5 cut(s)	35, 66, 101, 606, 928
MfeI	CAATTG	2 cut(s)	49, 1354
MhlI	GDGCHC	6 cut(s)	208, 347, 424, 524, 601, 807
MluCI	AATT	8 cut(s)	49, 182, 307, 932, 1141, 1309, 1354, 1367
MlyI	GAGTC	8 cut(s)	351, 367, 428, 444, 528, 544, 605, 625
MmeI	TCCRAC	1 cut(s)	33
MseI	TTAA	1 cut(s)	172
MslI	CAYNNNNRTG	2 cut(s)	34, 154
MspA1I	CMGCKG	2 cut(s)	122, 872
MunI	CAATTG	2 cut(s)	49, 1354
MwoI	GCNNNNNNNGC	7 cut(s)	743, 875, 993, 1146, 1161, 1314, 1323
NdeII	GATC	4 cut(s)	105, 116, 1032, 1200
NlaIV	GGNNCC	2 cut(s)	1105, 1273
NspI	RCATGY	2 cut(s)	33, 627
PagI	TCATGA	1 cut(s)	130
PciI	ACATGT	1 cut(s)	623
PfeI	GAWTC	3 cut(s)	753, 826, 957
PkrI	GCNGC	8 cut(s)	5, 668, 871, 946, 1124, 1151, 1154, 1292
PleI	GAGTC	8 cut(s)	351, 367, 428, 444, 528, 544, 605, 625
PpsI	GAGTC	8 cut(s)	351, 367, 428, 444, 528, 544, 605, 625
PscI	ACATGT	1 cut(s)	623
Psp124BI	GAGCTC	4 cut(s)	347, 424, 524, 601
PspFI	CCCAGC	1 cut(s)	733
PspN4I	GGNNCC	2 cut(s)	1105, 1273
PspPI	GGNCC	2 cut(s)	1070, 1238
PstI	CTGCAG	2 cut(s)	1151, 1319
PstNI	CAGNNNCTG	3 cut(s)	746, 1122, 1290
RsaI	GTAC	6 cut(s)	70, 97, 622, 718, 1015, 1183
RsaNI	GTAC	6 cut(s)	69, 96, 621, 717, 1014, 1182
RseI	CAYNNNNRTG	2 cut(s)	34, 154
SacI	GAGCTC	4 cut(s)	347, 424, 524, 601
SaqAI	TTAA	1 cut(s)	172
SatI	GCNGC	8 cut(s)	4, 667, 870, 945, 1123, 1150, 1153, 1291
Sau3AI	GATC	4 cut(s)	105, 116, 1032, 1200
Sau96I	GGNCC	2 cut(s)	1070, 1238
ScaI	AGTACT	1 cut(s)	70
SchI	GAGTC	8 cut(s)	351, 367, 428, 444, 528, 544, 605, 625
SduI	GDGCHC	6 cut(s)	208, 347, 424, 524, 601, 807
SfaNI	GCATC	9 cut(s)	182, 389, 466, 489, 566, 983, 1109, 1151, 1277
SfcI	CTRYAG	3 cut(s)	975, 1147, 1315
SinI	GGWCC	2 cut(s)	1070, 1238
SmiMI	CAYNNNNRTG	2 cut(s)	34, 154
SmlI	CTYRAG	1 cut(s)	315
SmoI	CTYRAG	1 cut(s)	315
Sse9I	AATT	8 cut(s)	49, 182, 307, 932, 1141, 1309, 1354, 1367
SsiI	CCGC	4 cut(s)	122, 659, 666, 870
SstI	GAGCTC	4 cut(s)	347, 424, 524, 601
TaaI	ACNGT	4 cut(s)	14, 678, 896, 979
TaqI	TCGA	4 cut(s)	21, 226, 250, 960
TasI	AATT	8 cut(s)	49, 182, 307, 932, 1141, 1309, 1354, 1367
TatI	WGTACW	4 cut(s)	68, 95, 620, 716
TauI	GCSGC	2 cut(s)	669, 872
TfiI	GAWTC	3 cut(s)	753, 826, 957
Tru1I	TTAA	1 cut(s)	172
Tru9I	TTAA	1 cut(s)	172
TscAI	CASTG	6 cut(s)	304, 812, 901, 984, 1093, 1261
TseI	GCWGC	6 cut(s)	3, 944, 1122, 1149, 1152, 1290
TspDTI	ATGAA	3 cut(s)	31, 714, 766
TspRI	CASTG	6 cut(s)	304, 812, 901, 984, 1093, 1261
VpaK11BI	GGWCC	2 cut(s)	1070, 1238
XapI	RAATTY	2 cut(s)	307, 1367
XceI	RCATGY	2 cut(s)	33, 627
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.