Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Forward (+)

32781384 .. 32782265

Gene Structure 882 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56785

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAACACTATCAAATTTATTTACTTGCAGCAACACCTTGAATCGAGGAAAAGTAAACTACAGTGCCAAGCAGTAGATGCTTCAGTTGAAGCTTTTGTACGCATGGCCTTTGACAGATCATTAGCAGTCTTAGCTTTGCAGGGTGGAGGGACAATGGACCAAGCAATCTGTCCACTGCTCTCGGGACAGGCACCAAACACCACAGATGCAGCTAACCAATCTGAGGCAATTCCTGCAGTCAATGCTAACAACAATAGTCAATCTGATGTTGCAATTGACATTGCAAATTCTCTTGCGTCAATGCTTGATAATCAAAATGGTCAAGTTGGAGGTCCTTCAACGTCTAGTAATGCATCAGAGCGTGATTCAGAAATGGAAAGCCAACTTGCTGAAGAACTAGCACAAGGAGATGCTTTCACTGACTATGATATTGAAGTTACTAGACAAGGTGAAGTCATAAGTGAGTACTTAGCTCTACTGAATTCAGCGGGAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

166

Amino Acids

17.63

Weight (kDa)

4.18

Isoelectric Point (pI)

44.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AciI	CCGC	1 cut(s)	488
AcsI	RAATTY	3 cut(s)	14, 286, 481
AcuI	CTGAAG	2 cut(s)	66, 411
AfaI	GTAC	2 cut(s)	99, 467
AfiI	CCNNNNNNNGG	1 cut(s)	223
AgsI	TTSAA	4 cut(s)	41, 89, 339, 434
AluBI	AGCT	4 cut(s)	92, 134, 212, 473
AluI	AGCT	4 cut(s)	92, 134, 212, 473
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	28, 209
ApoI	RAATTY	3 cut(s)	14, 286, 481
AspS9I	GGNCC	2 cut(s)	157, 332
AsuHPI	GGTGA	1 cut(s)	461
AvaI	CYCGRG	1 cut(s)	181
AvaII	GGWCC	2 cut(s)	157, 332
BanI	GGYRCC	1 cut(s)	190
BarI	GAAGNNNNNNTAC	2 cut(s)	81, 113
BbvI	GCAGC	2 cut(s)	40, 221
BfaI	CTAG	3 cut(s)	345, 398, 441
BfmI	CTRYAG	2 cut(s)	59, 234
BisI	GCNGC	2 cut(s)	29, 210
BlsI	GCNGC	2 cut(s)	30, 211
BmcAI	AGTACT	1 cut(s)	467
Bme18I	GGWCC	2 cut(s)	157, 332
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	2 cut(s)	157, 332
BmiI	GGNNCC	1 cut(s)	192
BmsI	GCATC	4 cut(s)	67, 196, 362, 400
Bsc4I	CCNNNNNNNGG	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	279
BseLI	CCNNNNNNNGG	1 cut(s)	223
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	213
BseXI	GCAGC	2 cut(s)	40, 221
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	190
BsiHKCI	CYCGRG	1 cut(s)	181
BslFI	GGGAC	2 cut(s)	163, 198
BslI	CCNNNNNNNGG	1 cut(s)	223
BsmFI	GGGAC	2 cut(s)	163, 198
BsnI	GGCC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	116
BspACI	CCGC	1 cut(s)	488
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	214
BspLI	GGNNCC	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	279
BssMI	GATC	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	63
BstAPI	GCANNNNNTGC	3 cut(s)	77, 233, 242
BstDEI	CTNAG	3 cut(s)	130, 222, 469
BstKTI	GATC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 131, 233, 242
BstSFI	CTRYAG	2 cut(s)	59, 234
BstV1I	GCAGC	2 cut(s)	40, 221
BsuRI	GGCC	1 cut(s)	107
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	3 cut(s)	68, 173, 417
Cfr13I	GGNCC	2 cut(s)	157, 332
CseI	GACGC	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	98, 466
CviAII	CATG	1 cut(s)	103
CviJI	RGCY	6 cut(s)	92, 107, 134, 212, 381, 473
CviKI_1	RGCY	6 cut(s)	92, 107, 134, 212, 381, 473
CviQI	GTAC	2 cut(s)	98, 466
DdeI	CTNAG	3 cut(s)	130, 222, 469
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	157, 332
Eco57I	CTGAAG	2 cut(s)	66, 411
Eco88I	CYCGRG	1 cut(s)	181
EcoO109I	RGGNCCY	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	481
EcoT22I	ATGCAT	1 cut(s)	355
FaeI	CATG	1 cut(s)	106
FaiI	YATR	3 cut(s)	104, 426, 458
FaqI	GGGAC	2 cut(s)	163, 198
FatI	CATG	1 cut(s)	102
FauI	CCCGC	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	29, 210
Fsp4HI	GCNGC	2 cut(s)	29, 210
FspBI	CTAG	3 cut(s)	345, 398, 441
GluI	GCNGC	2 cut(s)	29, 210
HaeIII	GGCC	1 cut(s)	107
HgaI	GACGC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	2 cut(s)	41, 365
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	2 cut(s)	56, 173
Hpy188I	TCNGA	4 cut(s)	223, 265, 358, 370
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	2 cut(s)	56, 173
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	63
HpyCH4IV	ACGT	1 cut(s)	341
HpyCH4V	TGCA	7 cut(s)	28, 139, 209, 236, 272, 284, 353
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 131, 233, 242
HpyF3I	CTNAG	3 cut(s)	130, 222, 469
HpySE526I	ACGT	1 cut(s)	341
Hsp92II	CATG	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	116
LpnPI	CCDG	3 cut(s)	125, 173, 246
Lsp1109I	GCAGC	2 cut(s)	40, 221
LweI	GCATC	4 cut(s)	67, 196, 362, 400
MaeI	CTAG	3 cut(s)	345, 398, 441
MaeII	ACGT	1 cut(s)	341
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
MboII	GAAGA	1 cut(s)	404
MfeI	CAATTG	1 cut(s)	273
MluCI	AATT	5 cut(s)	14, 228, 273, 286, 481
MmeI	TCCRAC	1 cut(s)	307
MnlI	CCTC	4 cut(s)	39, 140, 217, 323
Mph1103I	ATGCAT	1 cut(s)	355
MspA1I	CMGCKG	1 cut(s)	488
MunI	CAATTG	1 cut(s)	273
MwoI	GCNNNNNNNGC	4 cut(s)	77, 131, 233, 242
NdeII	GATC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	106
NlaIV	GGNNCC	1 cut(s)	192
NsiI	ATGCAT	1 cut(s)	355
PfeI	GAWTC	2 cut(s)	41, 365
PkrI	GCNGC	2 cut(s)	30, 211
PpuMI	RGGWCCY	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	332
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	157, 332
PspPPI	RGGWCCY	1 cut(s)	332
PstI	CTGCAG	1 cut(s)	238
RsaI	GTAC	2 cut(s)	99, 467
RsaNI	GTAC	2 cut(s)	98, 466
SatI	GCNGC	2 cut(s)	29, 210
Sau3AI	GATC	1 cut(s)	116
Sau96I	GGNCC	2 cut(s)	157, 332
ScaI	AGTACT	1 cut(s)	467
SetI	ASST	8 cut(s)	39, 94, 136, 214, 334, 344, 451, 475
SfaNI	GCATC	4 cut(s)	67, 196, 362, 400
SfcI	CTRYAG	2 cut(s)	59, 234
SinI	GGWCC	2 cut(s)	157, 332
Sse9I	AATT	5 cut(s)	14, 228, 273, 286, 481
SsiI	CCGC	1 cut(s)	488
SspMI	CTAG	3 cut(s)	345, 398, 441
TaaI	ACNGT	1 cut(s)	63
TaiI	ACGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	44
TasI	AATT	5 cut(s)	14, 228, 273, 286, 481
TatI	WGTACW	1 cut(s)	465
TfiI	GAWTC	2 cut(s)	41, 365
TscAI	CASTG	3 cut(s)	68, 180, 424
TseI	GCWGC	2 cut(s)	28, 209
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	68, 180, 424
VpaK11BI	GGWCC	2 cut(s)	157, 332
XapI	RAATTY	3 cut(s)	14, 286, 481
XspI	CTAG	3 cut(s)	345, 398, 441
ZrmI	AGTACT	1 cut(s)	467
Zsp2I	ATGCAT	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.