Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000694

Physical Location & Seq

Genomic Coordinates Reverse (-)

49829353 .. 49831397

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00255510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGTGGCCGAGCTCGGTGATCCACACAGCCATGCACTCGCCATTGAGAACTACTTGAGCTCCAAGTCTTCCACACAAGCGAAGCGGCTCAAGGGTGACGTCAAGAACAATCAATCTCTTGTTCGAGCATGGATAACCATGAAGAAGTTGCTGATGAGTTTAAAGGAGTCCAAGTCCGGTGGGCATCTCAAGCTTGAATCACACACTCTGTTTCCCACAATCTGTGATTTGATGGTTGAAGTTAATAGGACTCCACTGATGGCAATCATGATGGGCCTGATGCTTCATACCAATGCAAAGCAACCGATTAAAGCACAAAATTACCGAGATGCATTGGAAATGCTCGGCATGGAGAAGGTTCGTTACTGGAGGCTTTATCTCTATGCAATCCAAAGGTTATTGAGAATGGAAAGCGAATTTGCTGCAGAACTAGCACAAGGAGATGCTTTCACCGACCATGACATTGAAGTTACTAGAGAAGGTGAAGCCATAAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0019222 GO:0019538 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UBA ubiquitin

Protein Analysis

166

Amino Acids

18.87

Weight (kDa)

7.02

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000694)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0314531 RchiOBHm_Chr1g0314541 RchiOBHm_Chr1g0314551 RchiOBHm_Chr1g0341141 RchiOBHm_Chr1g0341151 RchiOBHm_Chr2g0147321 RchiOBHm_Chr2g0147341 RchiOBHm_Chr5g0016131 RchiOBHm_Chr5g0016141 RchiOBHm_Chr5g0016151 RchiOBHm_Chr5g0016251 RchiOBHm_Chr5g0029761 RchiOBHm_Chr5g0061311 RchiOBHm_Chr5g0069491 RchiOBHm_Chr5g0072041 RchiOBHm_Chr5g0072051 RchiOBHm_Chr5g0079831 RchiOBHm_Chr7g0226011 RchiOBHm_Chr7g0241351 RchiOBHm_Chr7g0241361 RchiOBHm_Chr7g0241381
rosa_laevigata	RLG00000012856 RLG00000014927 RLG00000036057 RLG00000036066 RLG00000036073
rosa_multiflora	Rmu_co8366475.1_g000001 Rmu_sc0000281.1_g000023 Rmu_sc0000689.1_g000025 Rmu_sc0000689.1_g000026 Rmu_sc0000848.1_g000013 Rmu_sc0001264.1_g000010 Rmu_sc0002132.1_g000040 Rmu_sc0003241.1_g000001 Rmu_sc0007385.1_g000008 Rmu_sc0007385.1_g000015 Rmu_sc0010665.1_g000021 Rmu_sc0015027.1_g000003 Rmu_sc0021542.1_g000001 Rmu_sc0023463.1_g000002 Rmu_sc0031947.1_g000001
rosa_roxburghii	Rroxscaffold_1G00011470 Rroxscaffold_1G00057460 Rroxscaffold_2G00135270 Rroxscaffold_3G00255510 Rroxscaffold_5G00365380
rosa_rugosa	Rorug07G0218300
rosa_samantha	Rh1AG011200 Rh1AG011300 Rh2BG272300 Rh2BG272400 Rh2BG536800 Rh3DG285000 Rh3DG285100 Rh4AG250800 Rh4BG145100 Rh5BG183100 Rh5BG474300 Rh5CG135400 Rh5CG135800 Rh5CG135900 Rh5CG496700 Rh5CG497800 Rh6AG068300 Rh6AG140800 Rh7BG191500 Rh7CG198900 Rh7CG436200 Rh7CG436300
rosa_wichuraiana	Rw1G023280 Rw2G052210 Rw6G005990 Rw6G021050 Rw7G010560 Rw7G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	102
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	416
AcyI	GRCGYC	1 cut(s)	99
AgsI	TTSAA	3 cut(s)	197, 239, 467
AluBI	AGCT	3 cut(s)	13, 60, 193
AluI	AGCT	3 cut(s)	13, 60, 193
Alw21I	GWGCWC	2 cut(s)	15, 62
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	2 cut(s)	6, 274
ApeKI	GCWGC	1 cut(s)	422
ApoI	RAATTY	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	4 cut(s)	29, 107, 442, 494
BanII	GRGCYC	2 cut(s)	15, 62
BarI	GAAGNNNNNNTAC	2 cut(s)	347, 379
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	15, 62
BbvI	GCAGC	1 cut(s)	409
BccI	CCATC	3 cut(s)	226, 253, 265
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BfaI	CTAG	2 cut(s)	431, 474
BfmI	CTRYAG	1 cut(s)	423
BisI	GCNGC	2 cut(s)	86, 423
BlsI	GCNGC	2 cut(s)	87, 424
BmgT120I	GGNCC	1 cut(s)	274
BmsI	GCATC	4 cut(s)	193, 270, 319, 433
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	388
BpuEI	CTTGAG	3 cut(s)	74, 76, 173
BsaBI	GATNNNNATC	1 cut(s)	263
BsaHI	GRCGYC	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	4 cut(s)	44, 74, 158, 188
Bse1I	ACTGG	1 cut(s)	371
Bse8I	GATNNNNATC	1 cut(s)	263
BseJI	GATNNNNATC	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	371
BseXI	GCAGC	1 cut(s)	409
BshFI	GGCC	2 cut(s)	8, 276
BsiHKAI	GWGCWC	2 cut(s)	15, 62
BsiSI	CCGG	1 cut(s)	177
BsnI	GGCC	2 cut(s)	8, 276
Bsp1286I	GDGCHC	2 cut(s)	15, 62
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	2 cut(s)	8, 276
BspHI	TCATGA	1 cut(s)	267
BspMAI	CTGCAG	1 cut(s)	427
BspPI	GGATC	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	371
BssMI	GATC	1 cut(s)	19
BssNI	GRCGYC	1 cut(s)	99
BstACI	GRCGYC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 431
BstSFI	CTRYAG	1 cut(s)	423
BstV1I	GCAGC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	60
BsuRI	GGCC	2 cut(s)	8, 276
BtsIMutI	CAGTG	1 cut(s)	254
CciI	TCATGA	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	274
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	6 cut(s)	32, 129, 139, 268, 349, 458
CviJI	RGCY	9 cut(s)	8, 13, 30, 60, 88, 193, 276, 373, 488
CviKI_1	RGCY	9 cut(s)	8, 13, 30, 60, 88, 193, 276, 373, 488
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
DraI	TTTAAA	1 cut(s)	162
EaeI	YGGCCR	1 cut(s)	6
Ecl136II	GAGCTC	2 cut(s)	13, 60
Eco24I	GRGCYC	2 cut(s)	15, 62
Eco53kI	GAGCTC	2 cut(s)	13, 60
EcoICRI	GAGCTC	2 cut(s)	13, 60
EcoT22I	ATGCAT	1 cut(s)	334
EcoT38I	GRGCYC	2 cut(s)	15, 62
FaeI	CATG	6 cut(s)	35, 132, 142, 271, 352, 461
FaiI	YATR	9 cut(s)	33, 130, 140, 269, 288, 350, 384, 459, 491
FatI	CATG	6 cut(s)	31, 128, 138, 267, 348, 457
Fnu4HI	GCNGC	2 cut(s)	86, 423
FriOI	GRGCYC	2 cut(s)	15, 62
Fsp4HI	GCNGC	2 cut(s)	86, 423
FspBI	CTAG	2 cut(s)	431, 474
GluI	GCNGC	2 cut(s)	86, 423
GsuI	CTGGAG	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	8, 276
HapII	CCGG	1 cut(s)	177
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	6 cut(s)	35, 132, 142, 271, 352, 461
HindIII	AAGCTT	1 cut(s)	191
HinfI	GANTC	3 cut(s)	167, 197, 250
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	4 cut(s)	29, 107, 442, 494
Hpy188III	TCNNGA	2 cut(s)	103, 268
HpyAV	CCTTC	2 cut(s)	349, 473
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	5 cut(s)	35, 296, 332, 386, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 431
HpySE526I	ACGT	1 cut(s)	99
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	6 cut(s)	35, 132, 142, 271, 352, 461
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	3 cut(s)	190, 290, 352
Lsp1109I	GCAGC	1 cut(s)	409
LweI	GCATC	4 cut(s)	193, 270, 319, 433
MaeI	CTAG	2 cut(s)	431, 474
MaeII	ACGT	1 cut(s)	99
MaeIII	GTNAC	3 cut(s)	95, 362, 469
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	2 cut(s)	60, 154
MhlI	GDGCHC	2 cut(s)	15, 62
MluCI	AATT	2 cut(s)	319, 416
MlyI	GAGTC	2 cut(s)	176, 244
MnlI	CCTC	1 cut(s)	363
Mph1103I	ATGCAT	1 cut(s)	334
MseI	TTAA	4 cut(s)	161, 243, 309, 499
MslI	CAYNNNNRTG	2 cut(s)	30, 291
MspI	CCGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	2 cut(s)	190, 431
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	6 cut(s)	35, 132, 142, 271, 352, 461
NmeAIII	GCCGAG	2 cut(s)	34, 324
NmuCI	GTSAC	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	334
PagI	TCATGA	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	87, 424
PleI	GAGTC	2 cut(s)	175, 244
PpsI	GAGTC	2 cut(s)	175, 244
Psp124BI	GAGCTC	2 cut(s)	15, 62
PspPI	GGNCC	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	30, 291
SacI	GAGCTC	2 cut(s)	15, 62
SaqAI	TTAA	4 cut(s)	161, 243, 309, 499
SatI	GCNGC	2 cut(s)	86, 423
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	2 cut(s)	176, 244
SduI	GDGCHC	2 cut(s)	15, 62
SetI	ASST	7 cut(s)	15, 62, 102, 195, 360, 398, 484
SfaNI	GCATC	4 cut(s)	193, 270, 319, 433
SfcI	CTRYAG	1 cut(s)	423
SmiMI	CAYNNNNRTG	2 cut(s)	30, 291
SmlI	CTYRAG	3 cut(s)	55, 89, 188
SmoI	CTYRAG	3 cut(s)	55, 89, 188
Sse9I	AATT	2 cut(s)	319, 416
SsiI	CCGC	1 cut(s)	85
SspMI	CTAG	2 cut(s)	431, 474
SstI	GAGCTC	2 cut(s)	15, 62
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	1 cut(s)	124
TasI	AATT	2 cut(s)	319, 416
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	4 cut(s)	161, 243, 309, 499
Tru9I	TTAA	4 cut(s)	161, 243, 309, 499
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	1 cut(s)	95
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	155, 275
TspRI	CASTG	1 cut(s)	261
XapI	RAATTY	1 cut(s)	416
XspI	CTAG	2 cut(s)	431, 474
ZraI	GACGTC	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.